View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_41 (Length: 308)
Name: NF14445_high_41
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 40736988 - 40737245
Alignment:
| Q |
18 |
gcctttgaaatgcgagaaacaagagaattaggtctcgtttaaaatttccactccccgcttgtcaagcatagccaaattaaaagccgttatatgtaaagct |
117 |
Q |
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| T |
40736988 |
gcctttaaaatgcgagaaacaagagaattaggtctcgtttaaaattttcactccccacttgtcaagcatagccaaattaaaagccgttatatgtaaagct |
40737087 |
T |
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| Q |
118 |
cgtgccaccatgaattttatgcatcttaacaatattttaaataagtccctnnnnnnnncaatatttcaaataatatta-ttttttaaaagaatctccgag |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40737088 |
cgtgccaccataaattttatgcatcttaacaatatttcaaataagtccct-aaaaaaacaatatttcaaataatattatttttttaaaagaatctccgag |
40737186 |
T |
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| Q |
217 |
aaaagcatagaaacaacaagttaatcatccgtttaaagaattaatttagaaaatgtaag |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40737187 |
aaaagcatagaaacaacaagttaatcatccgtttaaagaattaatttagaaaatgtaag |
40737245 |
T |
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