View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_44 (Length: 297)
Name: NF14445_high_44
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_44 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0137 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 46283211 - 46283507
Alignment:
| Q |
1 |
cttagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaattgtttcttcgattgaacagaagg |
100 |
Q |
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| T |
46283211 |
cttagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttcttcgattgaacagaagg |
46283310 |
T |
|
| Q |
101 |
aagaaggtagaaagaatgaagatcatgttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagtt |
200 |
Q |
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| T |
46283311 |
aagaaggtagaaagaatgaagatcatgttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagtt |
46283410 |
T |
|
| Q |
201 |
gttggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagttt |
297 |
Q |
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| T |
46283411 |
gttggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagttt |
46283507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 297
Target Start/End: Complemental strand, 3898979 - 3898777
Alignment:
| Q |
98 |
aggaagaaggtagaaagaatgaagatcatg---ttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattct |
194 |
Q |
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| T |
3898979 |
aggaagaaggtagaaagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatccgagttggagaatgtttgtggtagtattct |
3898880 |
T |
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| Q |
195 |
ggagttgttggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgag |
294 |
Q |
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| T |
3898879 |
ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag |
3898780 |
T |
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| Q |
295 |
ttt |
297 |
Q |
| |
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||| |
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| T |
3898779 |
ttt |
3898777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 297
Target Start/End: Complemental strand, 5310 - 5108
Alignment:
| Q |
98 |
aggaagaaggtagaaagaatgaagatcatg---ttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattct |
194 |
Q |
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| T |
5310 |
aggaagaaggtagaaagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatcagagttggagaatgtttgtggtagtattct |
5211 |
T |
|
| Q |
195 |
ggagttgttggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgag |
294 |
Q |
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||||||| |||||||||| ||||||||||| ||||| |||||||| | || |||| |||||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
5210 |
ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag |
5111 |
T |
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| Q |
295 |
ttt |
297 |
Q |
| |
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||| |
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| T |
5110 |
ttt |
5108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 27125438 - 27125477
Alignment:
| Q |
258 |
taagatgaaaggtgattatcataggtatttggctgagttt |
297 |
Q |
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| T |
27125438 |
taagatgaaaggtgattatcataggtatcttgctgagttt |
27125477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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