View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_48 (Length: 272)
Name: NF14445_high_48
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 55960006 - 55959766
Alignment:
| Q |
20 |
cttcttgccccttttgttagcaaaaacttataagtagaaattcaaagtaacaagcgaaatcacttccacaccatacacttcgaaatctgtcacaaaaata |
119 |
Q |
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| T |
55960006 |
cttcttgccccttttgttagcaaaaacttataagtagaaattcaaagtaacaagcgaaatcacttccacaccatacacttcgaaatctgtca--aaaata |
55959909 |
T |
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| Q |
120 |
tggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgctttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55959908 |
tggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgctttt |
55959809 |
T |
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| Q |
220 |
gttcaaaggccaaaactcattgctcctaatatattagcctatg |
262 |
Q |
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| T |
55959808 |
gttcaaaggccaaaactcattgctcctaatatattagcctatg |
55959766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 78 - 255
Target Start/End: Complemental strand, 55956501 - 55956324
Alignment:
| Q |
78 |
atcacttccacaccatacacttcgaaatctgtcacaaaaatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccct |
177 |
Q |
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| T |
55956501 |
atcacttccacatcatactcttcgagatctatccaacaaatatggacctcttatgtatcttcagcttggtgaaatttctgcagtggttgtttcatctcct |
55956402 |
T |
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| Q |
178 |
gatttagccaaagagatattgaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatatta |
255 |
Q |
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| T |
55956401 |
gatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatatta |
55956324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 12426828 - 12426654
Alignment:
| Q |
81 |
acttccacaccatacacttcgaaatctgtcacaaaaatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgat |
180 |
Q |
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||||||||||||||||||| || |||| || || ||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||| || |
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| T |
12426828 |
acttccacaccatacacttggagatctatcccacaaatatggacctcttatgcatcttcagcttggtgaaatttctacagtggttgtttcatcccctaat |
12426729 |
T |
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| Q |
181 |
ttagccaaagagatattgaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatatta |
255 |
Q |
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| T |
12426728 |
ttgactaaagagataatgaagacacatgatctttcttttgttcagaggccacaattcctagctccaaatatatta |
12426654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 12265992 - 12266173
Alignment:
| Q |
81 |
acttccacaccatacacttcgaaatctgtcacaaaaatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgat |
180 |
Q |
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||||| |||||||||| || || |||| ||||| ||||||||||||||||||||||||||||| |||||||||||| | | ||||| ||||||||| || |
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| T |
12265992 |
acttctacaccatacaattagagatctatcacacaaatatggacctcttatgcatcttcagcttggtgaaatttctgccgtggttgtttcatcccctaat |
12266091 |
T |
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| Q |
181 |
ttagccaaagagatattgaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatg |
262 |
Q |
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|| ||||||| ||| ||| ||||| ||||||| |||| ||| | |||||| | || ||||||| |||||| || |||||| |
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| T |
12266092 |
ttgaccaaagaaataatgaggacacatgatctttctttcgttgagaggccacgattccttgctccgaatataataacctatg |
12266173 |
T |
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