View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14445_high_51 (Length: 260)
Name: NF14445_high_51
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 55959551 - 55959784
Alignment:
| Q |
15 |
caaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaatggattgtataagcttttctacctcatcttctct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55959551 |
caaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaatggattgtataagcttttctacctcatcttctct |
55959650 |
T |
|
| Q |
115 |
aatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcctcatgtcatttgtctccaataatcaccgtatggagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55959651 |
aatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcc-----tcatttgtctccaataatcaccgtatggagc |
55959745 |
T |
|
| Q |
215 |
aaagacaatatataccagttgaatcataggctaatatattagg |
257 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55959746 |
aaagaca----ataccagttgaatcataggctaatatattagg |
55959784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 55956107 - 55956307
Alignment:
| Q |
15 |
caaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaatggattgtataagcttttctacctcatcttctct |
114 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
55956107 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
55956206 |
T |
|
| Q |
115 |
aatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcctcatgtcatttgtctccaataatcaccgtatggagc |
214 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||| | ||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
55956207 |
aatggaagaaaaataatgaacccttttagcactaa-----gaagctgtgatgtacatattttcctcatct-----gtctccaataatcaccgtatggagc |
55956296 |
T |
|
| Q |
215 |
aaagacaatat |
225 |
Q |
| |
|
| | ||||||| |
|
|
| T |
55956297 |
ataaacaatat |
55956307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 12426499 - 12426637
Alignment:
| Q |
77 |
tgaatggattgtataagcttttctacctcatcttctctaatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatatttt |
176 |
Q |
| |
|
|||||| ||||||| | |||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12426499 |
tgaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcac-----taagaagttctgatgtacatatttt |
12426593 |
T |
|
| Q |
177 |
cctcatgtcatttgtctccaataatcaccgtatggagcaaagacaatat |
225 |
Q |
| |
|
| |||| ||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
12426594 |
-----tctcatctgtctccaataatcaccatatgaagcaaagataatat |
12426637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 12266321 - 12266221
Alignment:
| Q |
77 |
tgaatggattgtataagcttttctacctcatcttctctaatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatatttt |
176 |
Q |
| |
|
|||||| ||||||| | |||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12266321 |
tgaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcac-----taagaagttctgatgtacatatttt |
12266227 |
T |
|
| Q |
177 |
cctcat |
182 |
Q |
| |
|
||||| |
|
|
| T |
12266226 |
tctcat |
12266221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 7140757 - 7140713
Alignment:
| Q |
103 |
ctcatcttctctaatggaagaaaaagattgaacccttttagcact |
147 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7140757 |
ctcatcttctctaatgtaagaaaaagattgaacccttttagcact |
7140713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 7152587 - 7152544
Alignment:
| Q |
104 |
tcatcttctctaatggaagaaaaagattgaacccttttagcact |
147 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7152587 |
tcatcttctctaatataagaaaaagattgaacccttttagcact |
7152544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University