View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14445_high_6 (Length: 641)
Name: NF14445_high_6
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 330 - 573
Target Start/End: Original strand, 50337130 - 50337370
Alignment:
| Q |
330 |
ttgatggggagagagtcttctaaagaatccaacgaacccaacccatttcttcctttcaagttcaacttgctctgtacttcctcatcgttgtcactactgt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
50337130 |
ttgatggggagagagtcttctaaagaatccaacgaacccaacccatttcttcctttcaagttcaacttgctctgtacttcctcatcgttgtcact---gt |
50337226 |
T |
|
| Q |
430 |
catcaggagttccgatcgacgatgaactatccggctccgatgaaacaccgccggtgaagaagaggtggcgaccgtcggactggttggaaggtggcggaga |
529 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50337227 |
catcaggagttccgatcgacgatgaactctccggctccgatgaaacaccgccggtgaagaagaggtggcgaccgtcggactggttggaaggtggcggaga |
50337326 |
T |
|
| Q |
530 |
tgaaggaacgtcaatggtgaaagtaggacccacaaaaacttcca |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50337327 |
tgaaggaacgtcaatggtgaaagtaggacccacaaaaacttcca |
50337370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 50336827 - 50337019
Alignment:
| Q |
27 |
ggcaaaagtggcatggattgaggatttgaccaagaatagaaagatgattttcttgaaaatttggatgcaattagaacccttcttcttttgttaaaaggac |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50336827 |
ggcaaaagtggcatggattgaggatttgaccaagaatagaaagatgattttcttgaaaatttggatgcaattagaacccttcttcttttgttaaaaggac |
50336926 |
T |
|
| Q |
127 |
tctcttgcttttgcaattcattcaaattgcttacttgtgatagatctgtgaatgactttgattttccttcaaaatgactcgataatcccctcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50336927 |
tctcttgcttttgcaattcattcaaattgcttacttgtgatagatctgtgaatgactttgattttccttcaaaatgactcgataatcccctcc |
50337019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 628
Target Start/End: Original strand, 50337393 - 50337425
Alignment:
| Q |
596 |
ggtaaagagtgatttggttattacccttgtcct |
628 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
50337393 |
ggtaaagagtgatttggttactacccttgtcct |
50337425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 366 - 571
Target Start/End: Complemental strand, 40470998 - 40470781
Alignment:
| Q |
366 |
cccaacccatttcttcctttcaagttcaacttgctctgtacttcctcatcgttgtcactactgtcatcaggagttccgatcgacgatgaactatccggct |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
40470998 |
cccaacccatttcttcctttcaagttcaacttgctctgcacttccttgtcgatgtcacg---gtcatcaggagttccgatcgacgacgaattttccggct |
40470902 |
T |
|
| Q |
466 |
ccgatgaaacaccgccggtgaagaa------------------gaggtggcgaccgtcggactggttggaaggtggcggagatgaaggaacgtcaatggt |
547 |
Q |
| |
|
||||||| ||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40470901 |
tcgatgaa---ccgccggtgaaaaactttggtggtctcaaaaagaggtgacgtccgtcggactggttggaaggtggcggagatgaaggaacgtcaatggt |
40470805 |
T |
|
| Q |
548 |
gaaagtaggacccacaaaaacttc |
571 |
Q |
| |
|
|||||| | ||||||||||||||| |
|
|
| T |
40470804 |
gaaagtggaacccacaaaaacttc |
40470781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 1410623 - 1410480
Alignment:
| Q |
72 |
gattttcttgaaaatttggatgcaattagaacccttcttcttttgttaaaaggactctcttgcttttgcaattcattcaaattgcttacttgtgatagat |
171 |
Q |
| |
|
||||| ||||| || || |||||||||| || |||||| || ||||| || ||| |||||||||| | | |||| ||| | | | ||||| ||||||| |
|
|
| T |
1410623 |
gatttccttgataactttgatgcaattaaaagccttctcctcttgttgaatggattctcttgcttctttagttcagtcacagttgtcacttgagatagat |
1410524 |
T |
|
| Q |
172 |
ctgtgaatgactttgattttccttcaaaatgactcgataatccc |
215 |
Q |
| |
|
| | |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1410523 |
ccgaaaatgactttgattttcctataaaatgattcgataatccc |
1410480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University