View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_60 (Length: 232)
Name: NF14445_high_60
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 17895060 - 17894851
Alignment:
| Q |
7 |
tcgaagaatattcaaatagtttcaatgaatcaacatacaaagatcaaaatctagacgaatcttacttaattgatgatgtaggcgatattgtgaagatgga |
106 |
Q |
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| T |
17895060 |
tcgacgaaaattcaaatagtttcaatgaatcaacatacaaagatcaaaatctagacgaatcttacttaattgatgatgtaggcgatattgtgaagatgga |
17894961 |
T |
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| Q |
107 |
tgtgtttaacttgaaaaatgaagatgtttcaaagttataatttgttaatcttgaagttgcgtacaagttttacttttggtttgcaaagatgaatggttta |
206 |
Q |
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| T |
17894960 |
tgtgtttaacttgaaaaatgaagatgtttcaaagttataatttgttaatcttgaagttgcgtacaagttttactcttggtttgcaaagatgaatggttta |
17894861 |
T |
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| Q |
207 |
gccatccaca |
216 |
Q |
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|||||||||| |
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| T |
17894860 |
gccatccaca |
17894851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 9386437 - 9386553
Alignment:
| Q |
89 |
cgatattgtgaagatggatgtgtttaacttgaaaaatgaagatgtttcaaagttataatttgttaatcttgaagttgcgtacaagttttacttttggttt |
188 |
Q |
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||||||||| |||||| || ||||||| ||| |||||||||||||||||||| || ||||| | | |||| ||||| ||||| ||||| | |||||| |
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| T |
9386437 |
cgatattgtaaagatgtatatgtttaatttgcaaaatgaagatgtttcaaagctactatttgggagtgttgaggttgcctacaatttttattgttggttc |
9386536 |
T |
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| Q |
189 |
gcaaagatgaatggttt |
205 |
Q |
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| T |
9386537 |
gcaaagatgaacggttt |
9386553 |
T |
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