View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_high_7 (Length: 603)

Name: NF14445_high_7
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_high_7
NF14445_high_7
[»] chr3 (13 HSPs)
chr3 (5-590)||(7642026-7642607)
chr3 (58-208)||(7638468-7638618)
chr3 (267-404)||(21587185-21587323)
chr3 (284-401)||(20458816-20458933)
chr3 (267-398)||(44122057-44122189)
chr3 (284-383)||(20463199-20463299)
chr3 (302-383)||(13639621-13639703)
chr3 (266-398)||(44126787-44126927)
chr3 (284-369)||(20459094-20459180)
chr3 (363-471)||(13100788-13100895)
chr3 (268-311)||(9777451-9777494)
chr3 (267-408)||(27547207-27547350)
chr3 (284-323)||(39872844-39872884)
[»] chr1 (10 HSPs)
chr1 (301-398)||(18640557-18640654)
chr1 (269-405)||(32808763-32808899)
chr1 (265-383)||(18643272-18643391)
chr1 (274-397)||(28201703-28201828)
chr1 (274-398)||(11444089-11444214)
chr1 (303-398)||(29547773-29547869)
chr1 (284-398)||(29530096-29530214)
chr1 (267-397)||(11441721-11441852)
chr1 (267-324)||(32805219-32805276)
chr1 (209-250)||(32834790-32834831)
[»] chr2 (8 HSPs)
chr2 (267-398)||(19912262-19912394)
chr2 (284-383)||(25231994-25232097)
chr2 (265-348)||(18731422-18731506)
chr2 (274-405)||(45276340-45276472)
chr2 (306-410)||(21294948-21295053)
chr2 (284-370)||(25225689-25225779)
chr2 (283-358)||(34111056-34111132)
chr2 (223-267)||(3566166-3566210)
[»] chr4 (10 HSPs)
chr4 (267-376)||(27360176-27360285)
chr4 (267-401)||(12746597-12746732)
chr4 (287-396)||(18902124-18902234)
chr4 (264-405)||(51700326-51700468)
chr4 (301-375)||(26654457-26654532)
chr4 (281-397)||(56341851-56341968)
chr4 (301-408)||(7895113-7895221)
chr4 (283-368)||(52311319-52311405)
chr4 (267-322)||(5350912-5350967)
chr4 (284-323)||(20275883-20275923)
[»] chr7 (5 HSPs)
chr7 (283-405)||(7578535-7578659)
chr7 (267-366)||(35339058-35339158)
chr7 (296-383)||(42129519-42129607)
chr7 (283-368)||(14719412-14719502)
chr7 (267-358)||(26617858-26617950)
[»] chr8 (3 HSPs)
chr8 (267-398)||(29185594-29185726)
chr8 (284-378)||(28621738-28621832)
chr8 (266-408)||(28350614-28350758)
[»] chr5 (15 HSPs)
chr5 (284-375)||(16633355-16633446)
chr5 (267-388)||(35074190-35074313)
chr5 (267-369)||(29681730-29681839)
chr5 (267-378)||(29948492-29948604)
chr5 (301-398)||(24213347-24213445)
chr5 (275-383)||(17627171-17627280)
chr5 (267-398)||(31109056-31109188)
chr5 (275-375)||(35105021-35105122)
chr5 (267-326)||(21575047-21575106)
chr5 (304-398)||(24228340-24228435)
chr5 (284-375)||(40786632-40786726)
chr5 (283-368)||(17604689-17604779)
chr5 (266-408)||(25214465-25214609)
chr5 (266-408)||(25278615-25278759)
chr5 (267-308)||(35104713-35104754)
[»] chr6 (2 HSPs)
chr6 (303-398)||(19441197-19441293)
chr6 (524-592)||(26235443-26235511)
[»] scaffold0062 (2 HSPs)
scaffold0062 (267-397)||(19810-19948)
scaffold0062 (267-397)||(29978-30116)
[»] scaffold0093 (1 HSPs)
scaffold0093 (529-592)||(16262-16325)
[»] scaffold0196 (1 HSPs)
scaffold0196 (223-267)||(26245-26289)


Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 5 - 590
Target Start/End: Original strand, 7642026 - 7642607
Alignment:
Q  5 gactgtagctttcatttggtggccgtcatagtcctgattctcatgagtcaatgatggtaataatggaaaattacctgcgtcatccgtggaactctttcat 104  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7642026 gactgtaactttcatttggtggacgtcatagtcctgattctcatgagtcaatgatggtaataatggaaaattacctgcgtcatccgtggaactctttcat 7642125  T
Q  105 gcatatacattgatgcaaataatttgtttcaaataaacacgtgtgtttgaatcttgaaaataaagaagagaactagtgaacaaatagtgatgatttgttt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7642126 gcatatacattgatgcaaataatttgtttcaaataaacacgtgtgtttgaatcttgaaaataaagaagagaactagtgaacagatagtgatgatttgttt 7642225  T
Q  205 tattctactcccttgattccattttaaatgacctaatttaaaaatacacattatttacataatgttataaataataaatttagtggatgtccatctttaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7642226 tattctactcccttgattccattttaaatgacctaatttaaaaatacacattatttacataatgttataaataataaatttagtggatgtccatctttaa 7642325  T
Q  305 tcttccaccttcctataaccccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaatagaactca 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||||||||||||||||| |||||    
T  7642326 tcttccaccttcctataaccccattagtgaatttatggttagtggtccttaattactttgatcatttacttgc----ttatatcatataaataggactca 7642421  T
Q  405 tgttgtttcgatgtaaatacacacatttgaagagaagaatatcaaaactttaaccttcctcatctttgatttgtcctagggaggtagttgtaattctgtc 504  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7642422 tgttgttttgatgtaaatacacacatttgaagagaataatatcaaaactttaaccttcctcatctttgatttgtcctagggaggtagttgtaattctgtc 7642521  T
Q  505 tataattttattttatttattaacggaaaggagtatgtttatagtatttgattaatattaatagagcttatacaatgaagtacatg 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7642522 tataattttattttatttattaacggaaaggagtatgtttatagtatttgattaatattaatagagtttatacaatgaagtacatg 7642607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 58 - 208
Target Start/End: Original strand, 7638468 - 7638618
Alignment:
Q  58 atggtaataatggaaaattacctgcgtcatccgtggaactctttcatgcatatacattgatgcaaataatttgtttcaaataaacacgtgtgtttgaatc 157  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7638468 atggtaataatggaaaactacctgcgacatgcgtggaactctttcatgcatacacattgatgtaaataatttgtttcaaataaacacgtgtgtttgaatc 7638567  T
Q  158 ttgaaaataaagaagagaactagtgaacaaatagtgatgatttgttttatt 208  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  7638568 ttgaaaataaagaagagaacaagtgaacaaaaagtgatgatttgttttatt 7638618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 21587323 - 21587185
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| |||| |||| ||||||| |||||| | |||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||| ||||||||    
T  21587323 tgttatgaatagtaaacttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttga 21587224  T
Q  366 tcatttacttgcttatttatatcatataaatagaactca 404  Q
    ||||| ||||||| |||| | || ||||||||| |||||    
T  21587223 tcattcacttgctcatttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 20458933 - 20458816
Alignment:
Q  284 ttagtggatgtccatctttaatcttccaccttcctataaccccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttattt 383  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||  |||||| || |||||||||| ||||||| ||||    
T  20458933 ttagtggatgtccatccttaatcttccaccttcctataaccccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcattt 20458834  T
Q  384 atatcatataaatagaac 401  Q
     |  | ||||||||||||    
T  20458833 gtgacctataaatagaac 20458816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 44122189 - 44122057
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||||   |||||||||| |||| ||| |||||||||||  ||||||    
T  44122189 tgttatgaataataagcttagtggatgtccatccttaatcttccaccttcctataaccaatattagtgaatgtatgcttaatggtccttaatgactttga 44122090  T
Q  366 tcatttacttgcttatttatatcatataaatag 398  Q
    ||||| || |||| |||| | || |||||||||    
T  44122089 tcattcacctgctcatttgtgtcctataaatag 44122057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 383
Target Start/End: Complemental strand, 20463299 - 20463199
Alignment:
Q  284 ttagtggatgtccatctttaatcttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatt 382  Q
    |||||||||||||||  ||| |||||| ||||||||||| ||| |||||||||| |||||||||||| |||||| |||| |||||||| ||||||| |||    
T  20463299 ttagtggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaaatgctgtgatcattcacttgctcatt 20463200  T
Q  383 t 383  Q
    |    
T  20463199 t 20463199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 13639621 - 13639703
Alignment:
Q  302 taatcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttattt 383  Q
    |||||||||||||||||||||||  | ||||| ||| |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  13639621 taatcttccaccttcctataaccttcgttagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcattt 13639703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 266 - 398
Target Start/End: Complemental strand, 44126927 - 44126787
Alignment:
Q  266 atgttataaataataaatttagtggatgtccatctttaatcttccacc-------ttcctataacc-ccattagtgaatttatggttagtggtccttaat 357  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||||       ||||||| ||| | || ||||||| |||| ||| |||||||||||    
T  44126927 atgttatgaataataagcttagtggatgtccatctttaatcttccaccttccaccttcctattaccactatcagtgaatgtatgtttaatggtccttaat 44126828  T
Q  358 tgctttgatcatttacttgcttatttatatcatataaatag 398  Q
      ||||||||||| ||||||| |||| | || |||||||||    
T  44126827 gactttgatcattcacttgctcatttgtgtcctataaatag 44126787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 20459094 - 20459180
Alignment:
Q  284 ttagtggatgtccatctttaatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaattgctttgatcat 369  Q
    ||||||| ||| |||| ||| |||||||||||||| ||| |||| |||||||||  ||||||||||| |||||| ||||||||||||    
T  20459094 ttagtggctgttcatccttagtcttccaccttcctgtaatccccgttagtgaatgcatggttagtggaccttaaatgctttgatcat 20459180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 471
Target Start/End: Original strand, 13100788 - 13100895
Alignment:
Q  363 tgatcatttacttgcttatttatatcatataaatagaactcatgttgtttcgatgtaaatacacaca-tttgaagagaagaatat-caaaactttaacct 460  Q
    |||||||| |||||||||||| |||| ||||||||| |||||   ||||| |||||||| | ||||| ||||||||||| ||||| ||||  ||| ||||    
T  13100788 tgatcattcacttgcttatttgtatcctataaataggactca---tgttttgatgtaaagatacacattttgaagagaataatatacaaagatttcacct 13100884  T
Q  461 tcctcatcttt 471  Q
    || ||||||||    
T  13100885 tcttcatcttt 13100895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 9777494 - 9777451
Alignment:
Q  268 gttataaataataaatttagtggatgtccatctttaatcttcca 311  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||    
T  9777494 gttatgaataataaaattagtggatgtccatccttaatcttcca 9777451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 408
Target Start/End: Original strand, 27547207 - 27547350
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaattgctt-tg 364  Q
    |||||| ||||||||| || ||||||||||||  || ||||| ||  ||| |||||  |||||||||||||  || ||||||| || || ||||| | ||    
T  27547207 tgttatgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtg 27547306  T
Q  365 atcatttacttgcttatttatatcatataaatagaactcatgtt 408  Q
    ||||||||| |||| |||  |||| ||||||||| |||||||||    
T  27547307 atcatttacctgctgattggtatcctataaataggactcatgtt 27547350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 39872844 - 39872884
Alignment:
Q  284 ttagtggatgtccat-ctttaatcttccaccttcctataac 323  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  39872844 ttagtggatgtccattctttaaccttccaccttcctataac 39872884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 301 - 398
Target Start/End: Complemental strand, 18640654 - 18640557
Alignment:
Q  301 ttaatcttccaccttcctataaccccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaatag 398  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| | || |||||||||    
T  18640654 ttaatcttccaccttcctataacctcattagtgaatgtatggttagtggtccttaattgctttgatcattcacttgctcatttgtgtcctataaatag 18640557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 269 - 405
Target Start/End: Original strand, 32808763 - 32808899
Alignment:
Q  269 ttataaataataaatttagtggatgtccatctttaatcttccaccttcctataaccccattagtgaatttatggttagtggtccttaattgctttgatca 368  Q
    |||| ||||||||| ||  ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  |    
T  32808763 ttatgaataataaacttcatggatttccatccttaatcttccaccttcctataaccccattagtgaatatatggttagtggtccttaattgatttgaata 32808862  T
Q  369 tttacttgcttatttatatcatataaatagaactcat 405  Q
    || ||||||| | |||| |  |||||||| |||||||    
T  32808863 ttcacttgctcaattattttctataaataaaactcat 32808899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 18643391 - 18643272
Alignment:
Q  265 aatgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaattgcttt 363  Q
    |||||||||||||||||||||||||||| || ||| |||||||  |||||| |||||| |||||||||||| | ||||||||||||||||||||||||||    
T  18643391 aatgttataaataataaatttagtggatatctatccttaatctatcacctttctataatccccattagtgactgtatggttagtggtccttaattgcttt 18643292  T
Q  364 gatcatttacttgcttattt 383  Q
    ||||||| | ||||| ||||    
T  18643291 gatcattcatttgctcattt 18643272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 274 - 397
Target Start/End: Complemental strand, 28201828 - 28201703
Alignment:
Q  274 aataataaatttagtggatgtccatctttaatcttccaccttcctataaccc--cattagtgaatttatggttagtggtccttaattgctttgatcattt 371  Q
    |||||||||  ||||||||||||||| || ||||||||||||||||||||||  ||||||||||| |||||||||| ||| |||||||||||||| |||     
T  28201828 aataataaacatagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattc 28201729  T
Q  372 acttgcttatttatatcatataaata 397  Q
    ||||| | |||||| || ||||||||    
T  28201728 acttgttcatttatgtcctataaata 28201703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 11444214 - 11444089
Alignment:
Q  274 aataataaatttagtggatgtccatctttaatcttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaattgctttgatcattta 372  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||   |||||||||| |||| ||| |||| ||||||  ||||||||||| |    
T  11444214 aataataagtttagtggatgtccatccttaatcttccaccttcctataaccattattagtgaatgtatgcttaatggttcttaatgactttgatcattca 11444115  T
Q  373 cttgcttatttatatcatataaatag 398  Q
    |||||| |||| | || |||||||||    
T  11444114 cttgctcatttgtgtcctataaatag 11444089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 303 - 398
Target Start/End: Original strand, 29547773 - 29547869
Alignment:
Q  303 aatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaatag 398  Q
    |||||||||||||||||||| |||||||||| |||  ||||||||||||||||||||  |||||||||| ||||||| |||||| || |||||||||    
T  29547773 aatcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcatttatgtcctataaatag 29547869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 398
Target Start/End: Original strand, 29530096 - 29530214
Alignment:
Q  284 ttagtggatgtccat---ctttaatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgctt 379  Q
    |||||||||||||||   ||| |||||||||| ||||| ||| |||||| ||| |||  ||||||||||||||||||||| |||||||||| |||||||     
T  29530096 ttagtggatgtccatgtccttcaatcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctc 29530195  T
Q  380 atttatatcatataaatag 398  Q
    |||| | ||||||||||||    
T  29530196 atttgtgtcatataaatag 29530214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 11441852 - 11441721
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataaccccattag-tgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| ||||||||  ||| |||||| ||||| |||||||||||||||| | ||||| | || | ||||| |||| ||| |||||||||||  ||||||    
T  11441852 tgttatgaataataagcttaatggatgcccatccttaatcttccaccttcgtgtaaccacttttggtgaatgtatgtttaatggtccttaatgactttga 11441753  T
Q  366 tcatttacttgcttatttatatcatataaata 397  Q
    || || |||||||||||| | || ||||||||    
T  11441752 tctttcacttgcttatttgtgtcctataaata 11441721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 32805219 - 32805276
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataacc 324  Q
    |||||| |||||||||||||| |||| |||||| ||||||||| || || ||||||||    
T  32805219 tgttatgaataataaatttagcggatatccatccttaatcttctacttttctataacc 32805276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 32834790 - 32834831
Alignment:
Q  209 ctactcccttgattccattttaaatgacctaatttaaaaata 250  Q
    |||||||||  || ||||||||||||||||||||||||||||    
T  32834790 ctactccctccatcccattttaaatgacctaatttaaaaata 32834831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 267 - 398
Target Start/End: Original strand, 19912262 - 19912394
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| ||||||| | |||||||||||||| | |||||||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||    
T  19912262 tgttatgaataatagacttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttga 19912361  T
Q  366 tcatttacttgcttatttatatcatataaatag 398  Q
    ||| | ||||||| |||| | || |||||||||    
T  19912362 tcactcacttgctcatttgtgtcctataaatag 19912394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 25231994 - 25232097
Alignment:
Q  284 ttagtggatgtccat---ctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgctt 379  Q
    |||||||||||||||   ||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||     
T  25231994 ttagtggatgtccatgtccttcaatcttccaccttcctataactcccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctc 25232093  T
Q  380 attt 383  Q
    ||||    
T  25232094 attt 25232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 18731422 - 18731506
Alignment:
Q  265 aatgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtg 348  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| |||| |||| || |||| |||||||| |||||||||||    
T  18731422 aatgttataaataataaacttagtggatgtccatccttaatcttccccctttctatgactcccactagtgaatgtatggttagtg 18731506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 274 - 405
Target Start/End: Original strand, 45276340 - 45276472
Alignment:
Q  274 aataataaatttagtggatgtccatctttaatcttccaccttcctataacccca-ttagtgaatttatggttagtggtccttaattgctttgatcattta 372  Q
    ||||| ||| ||| ||||||||||||  | ||||||||||||||||||||||   ||||||||| |||||||||||||||||||| | ||||| |||| |    
T  45276340 aataacaaacttaatggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattca 45276439  T
Q  373 cttgcttatttatatcatataaatagaactcat 405  Q
    ||| || |||| | || ||||||||| ||||||    
T  45276440 cttactcatttgtgtcctataaataggactcat 45276472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 410
Target Start/End: Complemental strand, 21295053 - 21294948
Alignment:
Q  306 cttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaatagaactca 404  Q
    ||||||||||| ||| ||| | |||||||||| |||  ||| |||||||||||  ||||||||||| ||||||| |||| |||| ||||||||| ||| |    
T  21295053 cttccaccttcttatcaccactattagtgaatgtatatttaatggtccttaatgactttgatcattcacttgctcatttgtatcctataaataggactta 21294954  T
Q  405 tgttgt 410  Q
    ||||||    
T  21294953 tgttgt 21294948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 25225689 - 25225779
Alignment:
Q  284 ttagtggatgtccat---ctttaatcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctttgatcatt 370  Q
    |||||||||||||||   ||| |||||||||||||| |||||| | ||||||| ||| ||||||||||| | |||||||| ||||||||||    
T  25225689 ttagtggatgtccatgtccttcaatcttccaccttcatataactctcattagtaaatgtatggttagtgattcttaattggtttgatcatt 25225779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 34111132 - 34111056
Alignment:
Q  283 tttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaatt 358  Q
    ||||||||||||||||| |||||| |||||||||||||||| | ||||||||| |  || |||||||| ||||||||    
T  34111132 tttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaatt 34111056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 3566166 - 3566210
Alignment:
Q  223 ccattttaaatgacctaatttaaaaatacacattatttacataat 267  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||    
T  3566166 ccattttaaatgacataatttaaaaatatacattgtttacataat 3566210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 267 - 376
Target Start/End: Original strand, 27360176 - 27360285
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataaccccattagtgaatttatggttagtggtccttaattgctttgat 366  Q
    ||||||||||||| || ||||||||||| ||||  || ||||||||||||||||||| |||| | |||||  |||||||||||||||||||| |||||||    
T  27360176 tgttataaataattaacttagtggatgttcatcagtagtcttccaccttcctataactccataaatgaatagatggttagtggtccttaattactttgat 27360275  T
Q  367 catttacttg 376  Q
    |||| |||||    
T  27360276 cattcacttg 27360285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 267 - 401
Target Start/End: Complemental strand, 12746732 - 12746597
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| ||||||||  |||||||||||||||| | |||||||||||||||||||||| | |||||||||| |||  ||| |||||||||||  ||||||    
T  12746732 tgttatgaataataagcttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttga 12746633  T
Q  366 tcatttacttgcttatttatatcatataaatagaac 401  Q
    ||||| ||||||| ||||   || ||||||||||||    
T  12746632 tcattcacttgctcatttgcgtcctataaatagaac 12746597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 18902234 - 18902124
Alignment:
Q  287 gtggatgtccatctttaatcttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttat 385  Q
    |||||||| |||| |||||||| ||||||||||||||| ||||||||||||  ||| ||| ||||||||||||| ||||||| || ||||||| |||| |    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcatttgt 18902135  T
Q  386 atcatataaat 396  Q
     || |||||||    
T  18902134 gtcctataaat 18902124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 264 - 405
Target Start/End: Complemental strand, 51700468 - 51700326
Alignment:
Q  264 taatgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctt 362  Q
    ||||||||| ||||||| |   |||||||||||||| ||||||||| ||||| ||||||| | ||||||||||| |||| |||  ||| |||||||  ||    
T  51700468 taatgttatgaataatagacacagtggatgtccatccttaatcttctacctttctataactctcattagtgaatgtatgattatcggttcttaattattt 51700369  T
Q  363 tgatcatttacttgcttatttatatcatataaatagaactcat 405  Q
    |||||||| || |||| |||| ||||||||||| || ||||||    
T  51700368 tgatcattcacatgctcatttgtatcatataaagaggactcat 51700326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 26654457 - 26654532
Alignment:
Q  301 ttaatcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctttgatcatttactt 375  Q
    ||||||||||||||||||||||||  | || |||||| ||||||||||||||||||||||||||||| ||| ||||    
T  26654457 ttaatcttccaccttcctataaccatcgttggtgaatgtatggttagtggtccttaattgctttgattattcactt 26654532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 56341968 - 56341851
Alignment:
Q  281 aatttagtggatgtccatctttaatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgctt 379  Q
    ||||| |||||||| |||||||| |||||||||||||||||| |   |||||||| |  ||||||||||||  ||||||| ||| |||||| |||||||     
T  56341968 aatttggtggatgttcatctttagtcttccaccttcctataatctttattagtgagtggatggttagtggtggttaattgttttcatcattcacttgctc 56341869  T
Q  380 atttatatcatataaata 397  Q
    |||||| || ||||||||    
T  56341868 atttatgtcttataaata 56341851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 408
Target Start/End: Original strand, 7895113 - 7895221
Alignment:
Q  301 ttaatcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaataga 399  Q
    |||||||||||| || ||| ||||  ||||||||||| |||||||||||||||||||||  ||||| |||||| |||||||||| | |  ||||||||      
T  7895113 ttaatcttccacttttctacaaccttcattagtgaatatatggttagtggtccttaattattttgaacatttatttgcttatttgtgttctataaataag 7895212  T
Q  400 actcatgtt 408  Q
    |||||||||    
T  7895213 actcatgtt 7895221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 52311405 - 52311319
Alignment:
Q  283 tttagtggatgtccatctttaatcttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattgctttgatca 368  Q
    ||||||| |||||||||  || |||||||||||||||||||||| ||| |||| |  || |||||||| |||||||| |||||||||    
T  52311405 tttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatca 52311319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 5350912 - 5350967
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataa 322  Q
    |||||| ||||||  | |||||||||||||||| ||| ||||||||||||||||||    
T  5350912 tgttatgaataattgacttagtggatgtccatccttagtcttccaccttcctataa 5350967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 20275883 - 20275923
Alignment:
Q  284 ttagtggatgtccatctttaa-tcttccaccttcctataac 323  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  20275883 ttagtggatgtccatccttaagtcttccaccttcctataac 20275923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 283 - 405
Target Start/End: Original strand, 7578535 - 7578659
Alignment:
Q  283 tttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttat 381  Q
    ||||||||||||||||| ||| ||||||||||||| ||||  ||||| |||||||  ||||| |||||||||||||| ||||||||||| ||||||||||    
T  7578535 tttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttat 7578634  T
Q  382 -ttatatcatataaatagaactcat 405  Q
     || |||| ||||||||| ||||||    
T  7578635 attgtatcctataaataggactcat 7578659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 267 - 366
Target Start/End: Complemental strand, 35339158 - 35339058
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| ||| || ||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||  ||||||| |||||||||||| ||||||    
T  35339158 tgttatgaattattaatttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttga 35339059  T
Q  366 t 366  Q
    |    
T  35339058 t 35339058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 42129519 - 42129607
Alignment:
Q  296 catctttaatcttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttattt 383  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||| ||||||||||| ||||||| ||||    
T  42129519 catccttaatcttccaccttcctataacccctattagtgaatatatggttaatgatccttaatttctttgatcattcacttgctcattt 42129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 14719502 - 14719412
Alignment:
Q  283 tttagtggatgtccatctttaatcttccaccttcctataa-ccccatt----agtgaatttatggttagtggtccttaattgctttgatca 368  Q
    |||||||||||||| || ||| |||||||||||||||||| |||||||    ||||||| ||| |||||||| ||||||||  ||||||||    
T  14719502 tttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatca 14719412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 26617950 - 26617858
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaatt 358  Q
    |||||| |||||| || ||||||||| |||||| ||| |||| ||| ||||||||| |||||||| ||| |  || |||||||| ||||||||    
T  26617950 tgttatgaataattaacttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaatt 26617858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 29185726 - 29185594
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| ||||||||| || ||||||||||||  || ||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||  |||||    
T  29185726 tgttatgaataataaagttggtggatgtccattcttgatcttccaccttcctataatccccattagtaaatatatggtttgtggtccttaattcgtttga 29185627  T
Q  366 tcatttacttgcttatttatatcatataaatag 398  Q
    ||||  | ||||| |||| | || |||||||||    
T  29185626 tcatccatttgctcatttgtgtcctataaatag 29185594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 28621738 - 28621832
Alignment:
Q  284 ttagtggatgtccatctttaatcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctttgatcatttacttgct 378  Q
    |||||||||||||||| |||   |||||||||| |||||| | ||| |||||||  |||||||||||||||||||| |||| |||||| |||||||    
T  28621738 ttagtggatgtccatcattagctttccaccttc-tataactcacataagtgaatggatggttagtggtccttaattactttaatcattcacttgct 28621832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 28350758 - 28350614
Alignment:
Q  266 atgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtg-aatttatggttagtggtccttaattgctt- 362  Q
    ||||||| ||||||||| |||||| ||||||||  || ||||||||  ||| |||||| |||||||||| |||  || ||||||| || || ||||| |     
T  28350758 atgttatgaataataaagttagtgaatgtccattcttgatcttccaagttc-tataactcccattagtggaatgaattgttagtgctctttgattgcatg 28350660  T
Q  363 tgatcatttacttgcttatttatatcatataaatagaactcatgtt 408  Q
    ||| |||| |||||||||||| |||| ||||||||| |||||||||    
T  28350659 tgaacattcacttgcttatttgtatcctataaataggactcatgtt 28350614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 16633446 - 16633355
Alignment:
Q  284 ttagtggatgtccatctttaatcttccaccttcctataaccccattagtgaatttatggttagtggtccttaattgctttgatcatttactt 375  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| || |  || |||||||| |||||||| ||||||||||| ||||    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataaccccattagcgagtgaatagttagtggaccttaattactttgatcattcactt 16633355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 388
Target Start/End: Complemental strand, 35074313 - 35074190
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaa-tcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctttg 364  Q
    |||||| ||||||||||||  |||||||||||| |||| |||| |||||||||||||  | || |||||||| |||| ||||||||||||||||||||||    
T  35074313 tgttatgaataataaatttgatggatgtccatccttaagtctttcaccttcctataattctcactagtgaatgtatgattagtggtccttaattgctttg 35074214  T
Q  365 atcatttacttgcttatttatatc 388  Q
    |||||| | ||||| |||| ||||    
T  35074213 atcattaatttgctcatttgtatc 35074190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 267 - 369
Target Start/End: Complemental strand, 29681839 - 29681730
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataacc-ccattagtga------atttatggttagtggtccttaattg 359  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||      || |||||||||||||||| |||||    
T  29681839 tgttatgaataataaacttagtggatgttcatctttaatcttccacctttctataacctccattagtgaatgtatatgtatggttagtggtcctcaattg 29681740  T
Q  360 ctttgatcat 369  Q
     |||||||||    
T  29681739 ttttgatcat 29681730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 267 - 378
Target Start/End: Complemental strand, 29948604 - 29948492
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataa-ccccattagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| |||||| || |||||||||||||||| |||||||||||| |||||||||  || || ||||||   ||||||| |||||||||||| ||||||    
T  29948604 tgttatgaataattaacttagtggatgtccatccttaatcttccacattcctataagtcctataagtgaagggatggttactggtccttaattactttga 29948505  T
Q  366 tcatttacttgct 378  Q
    ||||| |||||||    
T  29948504 tcattcacttgct 29948492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 301 - 398
Target Start/End: Complemental strand, 24213445 - 24213347
Alignment:
Q  301 ttaatcttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaatag 398  Q
    |||||||||||||||| ||||||| |||||||| ||| |||||||| ||||| ||||||| |||||||||| ||||||| |||| | || |||||||||    
T  24213445 ttaatcttccaccttcttataacctccattagtaaatgtatggttattggtctttaattggtttgatcattcacttgctcatttgtgtcctataaatag 24213347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 275 - 383
Target Start/End: Original strand, 17627171 - 17627280
Alignment:
Q  275 ataataaatttagtggatgtccatctttaatcttccaccttcctat-aaccccattagtgaatttatggttagtggtccttaattgctttgatcatttac 373  Q
    ||||||||||||||||| |||| ||||| ||||| ||||||||||| |||   || ||||||| ||||||||||||||||||| |  ||||||||||||     
T  17627171 ataataaatttagtggaagtccgtctttgatctttcaccttcctataaacttaataagtgaatatatggttagtggtccttaaatattttgatcatttat 17627270  T
Q  374 ttgcttattt 383  Q
    ||||| ||||    
T  17627271 ttgctcattt 17627280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 31109188 - 31109056
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaattgctttga 365  Q
    |||||| ||||||||  ||| |||||||||||| ||||||| |||| ||||||||||  | |||||||||| |||| ||| ||||| |||||  ||| ||    
T  31109188 tgttatgaataataagcttaatggatgtccatccttaatctcccacattcctataacttctattagtgaatgtatgtttaatggtctttaatgacttcga 31109089  T
Q  366 tcatttacttgcttatttatatcatataaatag 398  Q
    ||||| ||||||| |||| | ||||||||||||    
T  31109088 tcattcacttgctcatttgtgtcatataaatag 31109056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 35105021 - 35105122
Alignment:
Q  275 ataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtgaatttatggttagtggtccttaattgctttgatcatttac 373  Q
    ||||| || |||||||||||||||| ||| |||| |||||| | ||||| ||||| |||||||  |||||||||| ||||||||| ||||||||||| ||    
T  35105021 ataattaacttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcac 35105120  T
Q  374 tt 375  Q
    ||    
T  35105121 tt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 21575106 - 21575047
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataacccc 326  Q
    ||||||||||||  || |||||||||||||||| ||| ||||||||||||||||||||||    
T  21575106 tgttataaataaataacttagtggatgtccatccttagtcttccaccttcctataacccc 21575047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 24228435 - 24228340
Alignment:
Q  304 atcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaatag 398  Q
    |||||||||||||||||||||| ||||| |  || |||||||| ||||| ||||||| |||||||||| ||||||| | || |||| |||||||||    
T  24228435 atcttccaccttcctataaccctcattaatatatgtatggttattggtctttaattggtttgatcattcacttgctcaattgtatcctataaatag 24228340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 40786632 - 40786726
Alignment:
Q  284 ttagtggatgtccatctttaatcttccaccttcctataacccc-attagtgaatttatggtta--gtggtccttaattgctttgatcatttactt 375  Q
    ||||||||||| |||  ||  |||||||||||||||||||||| |||||| ||| ||||||||  |||||||||||||| |||||||||| ||||    
T  40786632 ttagtggatgttcattcttggtcttccaccttcctataacccccattagtaaatgtatggttatagtggtccttaattgatttgatcattcactt 40786726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 17604689 - 17604779
Alignment:
Q  283 tttagtggatgtccatctttaatcttccaccttcctataa-ccccatt----agtgaatttatggttagtggtccttaattgctttgatca 368  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||    ||||||| ||| |||||||| ||||||||  ||||||||    
T  17604689 tttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatca 17604779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 25214609 - 25214465
Alignment:
Q  266 atgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtg-aatttatggttagtggtccttaattgctt- 362  Q
    ||||||| ||||||||| |||||||||||||||  || ||||||||  ||| |||||| |||||||||| |||  || ||||||| || || ||||| |     
T  25214609 atgttatgaataataaagttagtggatgtccattcttgatcttccaagttc-tataactcccattagtggaatgaattgttagtgctctttgattgcatg 25214511  T
Q  363 tgatcatttacttgcttatttatatcatataaatagaactcatgtt 408  Q
    ||| |||| |||||||||||| |||| ||||||||| |||||||||    
T  25214510 tgaacattcacttgcttatttgtatcctataaataggactcatgtt 25214465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 25278759 - 25278615
Alignment:
Q  266 atgttataaataataaatttagtggatgtccatctttaatcttccaccttcctataac-cccattagtg-aatttatggttagtggtccttaattgctt- 362  Q
    ||||||| ||||||||| |||||||||||||||  || ||||||||  ||| |||||| |||||||||| |||  || ||||||| || || ||||| |     
T  25278759 atgttatgaataataaagttagtggatgtccattcttgatcttccaagttc-tataactcccattagtggaatgaattgttagtgctctttgattgcatg 25278661  T
Q  363 tgatcatttacttgcttatttatatcatataaatagaactcatgtt 408  Q
    ||| |||| |||||||||||| |||| ||||||||| |||||||||    
T  25278660 tgaacattcacttgcttatttgtatcctataaataggactcatgtt 25278615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 35104713 - 35104754
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaatctt 308  Q
    |||||| |||||| ||||||||||||||||||| ||||||||    
T  35104713 tgttatgaataattaatttagtggatgtccatccttaatctt 35104754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 19441293 - 19441197
Alignment:
Q  303 aatcttccaccttcctataacccc-attagtgaatttatggttagtggtccttaattgctttgatcatttacttgcttatttatatcatataaatag 398  Q
    |||||||||||||||||||||||| ||| || ||| ||||||||||||||||||| || |||||||||| ||||||| |||| | || |||||||||    
T  19441293 aatcttccaccttcctataacccccattggtaaatctatggttagtggtccttaaatggtttgatcattcacttgctcatttgtgtcctataaatag 19441197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 592
Target Start/End: Original strand, 26235443 - 26235511
Alignment:
Q  524 ttaacggaaaggagtatgtttatagtatttgattaatattaatagagcttatacaatgaagtacatgat 592  Q
    |||| ||||| ||| |||||||||| |||| ||||||| ||| |||| ||||||||| |||||||||||    
T  26235443 ttaaaggaaaagagaatgtttatagcatttcattaataataagagagtttatacaataaagtacatgat 26235511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 19810 - 19948
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaat-------cttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaatt 358  Q
    |||||| |||||||| |||||||||||| |||| |||||       |||||| |||||||||||| | |||||||||| |||  ||| | |||||||||     
T  19810 tgttatgaataataagtttagtggatgttcatccttaatctttcaccttccatcttcctataaccactattagtgaatgtatacttaatagtccttaatg 19909  T
Q  359 gctttgatcatttacttgcttatttatatcatataaata 397  Q
     ||||||||||| ||||| | |||| | |||||||||||    
T  19910 actttgatcattcacttgttcatttgtgtcatataaata 19948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 29978 - 30116
Alignment:
Q  267 tgttataaataataaatttagtggatgtccatctttaat-------cttccaccttcctataacc-ccattagtgaatttatggttagtggtccttaatt 358  Q
    |||||| |||||||| |||||||||||| |||| |||||       |||||| |||||||||||| | |||||||||| |||  ||| | |||||||||     
T  29978 tgttatgaataataagtttagtggatgttcatccttaatctttcaccttccatcttcctataaccactattagtgaatgtatacttaatagtccttaatg 30077  T
Q  359 gctttgatcatttacttgcttatttatatcatataaata 397  Q
     ||||||||||| ||||| | |||| | |||||||||||    
T  30078 actttgatcattcacttgttcatttgtgtcatataaata 30116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 592
Target Start/End: Original strand, 16262 - 16325
Alignment:
Q  529 ggaaaggagtatgtttatagtatttgattaatattaatagagcttatacaatgaagtacatgat 592  Q
    ||||| ||||||| |||||| |||| ||||||| ||| |||| |||||||| ||||||||||||    
T  16262 ggaaaagagtatgcttatagcatttcattaataataagagagtttatacaacgaagtacatgat 16325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 26245 - 26289
Alignment:
Q  223 ccattttaaatgacctaatttaaaaatacacattatttacataat 267  Q
    |||||||||||||| |||||||||||||  |||| ||||||||||    
T  26245 ccattttaaatgacataatttaaaaatatgcattgtttacataat 26289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University