View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_9 (Length: 570)
Name: NF14445_high_9
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 340 - 556
Target Start/End: Complemental strand, 26644879 - 26644663
Alignment:
| Q |
340 |
ttacccgtttcttatagtgtcaacacattcaaatgcaactggatggagaagaatgagagagatgttaaccaaacaaagtgtcaatagtaccattgttgta |
439 |
Q |
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|||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26644879 |
ttacccctttcttatagtgtcaacacattcaaatgtagctggatggagaagaatgagagagatgttaaccaaacaaagtgtcaatagtaccattgttgta |
26644780 |
T |
|
| Q |
440 |
gcgctacgtccaccttgggtggcaaatgaattcaattcgtattttattcttccctgccaataattcatagactcaaagaagttaatgttaagttatgaat |
539 |
Q |
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| T |
26644779 |
gcgctacgtccaccttgggtggcaaatgaattcaattcgtattttattcttccctgccaataattcatagactcaaagaagttaatgttaagttatgaat |
26644680 |
T |
|
| Q |
540 |
acatgatatattgttcc |
556 |
Q |
| |
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||||||||||||||||| |
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| T |
26644679 |
acatgatatattgttcc |
26644663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 26645206 - 26644993
Alignment:
| Q |
7 |
aatatatagtaaattcaaaaagattcataaccaacatttataaatcaattggtttttaatcaattacattgtcgccgagggcatctcaaatccttgtatt |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
26645206 |
aatatatagtaaattcaaaaagatacataaccaacatttataaatcaactggtttttaatcaattacattgtcgtcgagggtatctcaaatccttgtatt |
26645107 |
T |
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| Q |
107 |
ttgagttaagtggtgtttgattgtacagaacctttccatcaactccgtcgtgatacaattgttatgcgaccatgaacaaccacttatttcttttgtgaag |
206 |
Q |
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| T |
26645106 |
ttgagttaagtggtgtttgattgtacggaacctttcgatcaact--------at-caattgttatgcgaccatgaacaaccacttatttcttttgtgaag |
26645016 |
T |
|
| Q |
207 |
actttgcaccatcggagggtggc |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
26645015 |
actttgcaccatcggagggtggc |
26644993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 51031150 - 51031372
Alignment:
| Q |
7 |
aatatatagtaaattcaaaaagattcataaccaacatttataaatcaattggtttttaatcaattacattgtcgccgagggcatctcaaatccttgtatt |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51031150 |
aatatatagtaaattcaaaaagatacataaccaacatttataaatcaactggtttttaatcaattacattgtcgccgagggtatctcaaatccttgtatt |
51031249 |
T |
|
| Q |
107 |
ttgagttaagtggtgtttgattgtacagaacctttccatcaactccgtcgtgatacaattgttatgcgaccatgaacaaccacttatttcttttgtgaag |
206 |
Q |
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| T |
51031250 |
ttgagttaagtggtgtttgattgtacggaacctttcgatcaactccgtcgtgatacaattgttatgcgaccatgaacaaccacttatttcttttgtgaaa |
51031349 |
T |
|
| Q |
207 |
actttgcaccatcggagggtggc |
229 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
51031350 |
actttgcaccatcggagggtggc |
51031372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 338 - 497
Target Start/End: Original strand, 51031469 - 51031627
Alignment:
| Q |
338 |
tgttacccgtttcttatagtgtcaacacattcaaatgcaactggatggagaagaatgagagagatgttaaccaaacaaagtgtcaatagtaccattgttg |
437 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
51031469 |
tgttacccctttcttatagtgtcaacacattcaaatgcaactgg-tggagaagaatgagagagatgttaaccaaaaaaaatgtcaatagtaccattgttg |
51031567 |
T |
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| Q |
438 |
tagcgctacgtccaccttgggtggcaaatgaattcaattcgtattttattcttccctgcc |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
51031568 |
tagcgctacgtccaccttgggtggcaaatgaattcaatttgtattttattcttcgctgcc |
51031627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 556
Target Start/End: Original strand, 51031783 - 51031846
Alignment:
| Q |
493 |
ctgccaataattcatagactcaaagaagttaatgttaagttatgaatacatgatatattgttcc |
556 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51031783 |
ctgccaacaattcatagactcaaagaagttaatgttaagttatgaatacatgatatattgttcc |
51031846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 7457914 - 7458137
Alignment:
| Q |
7 |
aatatatagtaaattcaaaaagattcataaccaacatttataaatcaattggtttttaa-tcaattacattgtcgccgagggcatctcaaatccttgtat |
105 |
Q |
| |
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|||| ||||||||| |||||||| ||||| ||| ||||||||||||||||||| ||| |||||||||||| |||| |||||||| ||||||||||||| |
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| T |
7457914 |
aataaatagtaaatgcaaaaagagacataatcaatttttataaatcaattggtttgtaaatcaattacattgccgccaagggcatcccaaatccttgtat |
7458013 |
T |
|
| Q |
106 |
tttgagttaagtggtgtttgattgtacagaacctttccatcaactccgtcgtgatacaattgttatgcgaccatgaacaaccacttatttcttttgtgaa |
205 |
Q |
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|||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7458014 |
tttgagttaagtggtgttcgattgtacataacctttcgatcaactccgtcgtgatacaattgttgcgcgaccatgaacaaccacttatttcttttgtgaa |
7458113 |
T |
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| Q |
206 |
gactttgcaccatcggagggtggc |
229 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
7458114 |
gactttgcaccatcgaagggtggc |
7458137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 31876081 - 31875865
Alignment:
| Q |
12 |
atagtaaattcaaaaagattcataaccaacatttataaatcaattggtttttaa-tcaattacattgtcgccgagggcatctcaaatccttgtattttga |
110 |
Q |
| |
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||||||||| |||||||| ||||| |||| |||||||||||| |||||| ||| |||||||||||| |||| ||||||||||||||||||||||| || |
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| T |
31876081 |
atagtaaatgcaaaaagagacataatcaacctttataaatcaactggtttgtaaatcaattacattgccgccaagggcatctcaaatccttgtatt--ga |
31875984 |
T |
|
| Q |
111 |
gttaagtggtgtttgattgtacagaacctttccatcaactccgtcgtgatacaattgttatgcgaccatgaacaaccacttatttcttttgtgaagactt |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
31875983 |
gttaagtggtgttcgattgtacagaacctttcgatcaactccgtcgtgatacaattgttgcgcgaccatgaacaacaacttatttcttttgtgaagactt |
31875884 |
T |
|
| Q |
211 |
tgcaccatcggagggtggc |
229 |
Q |
| |
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|||||||||| |||||||| |
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| T |
31875883 |
tgcaccatcgaagggtggc |
31875865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 11349693 - 11349839
Alignment:
| Q |
73 |
cattgtcgccgagggcatctcaaatccttgtattttgagttaagtggtgtttgattgtacagaacctttccatcaactccgtcgtgatacaattgttatg |
172 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
11349693 |
cattgccgccaagggcatctcaaatccttgtattttgagttaagtggtgtttgattgtacataacctttcaatcaactccgtcgtgatacaattgttgcg |
11349792 |
T |
|
| Q |
173 |
cgaccatgaacaaccacttatttcttttgtgaagactttgcaccatc |
219 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11349793 |
cgaccatgaacagccacttatttcttttgtgaagactttgcaccatc |
11349839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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