View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_11 (Length: 536)
Name: NF14445_low_11
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 2096758 - 2097256
Alignment:
| Q |
18 |
tatatgtatatacttctgtccctgcaaatgacaaaaagagctttaaatgaatgtagcttatcaaggaaatcagtgttgaacttaaccaacatacttggcc |
117 |
Q |
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| T |
2096758 |
tatatgtatatacttctgtccctgcaaatgacaaatagagctttaaatgaatgcagcttatcaaggaaatcggtgttgaacttaaccaacatacttggcc |
2096857 |
T |
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| Q |
118 |
atctaagaagttcaattatcttgaaatatcatatgaaggatagttactcgacaagaagttcaattggatttaaatttttgaaattcaataattatttcaa |
217 |
Q |
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| T |
2096858 |
atctaagaagttcaattatcttgaaatatcatatgaaggatagttactcgacaagaagttcaattggatttaaatttttgaaattcaataattatttcaa |
2096957 |
T |
|
| Q |
218 |
agaaagggttcaggagttcaaagcatacattcaaagcaaagcaatcatagcaattcgagaataagtgtcaagggactaatttttaaatcagaggaaacag |
317 |
Q |
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| T |
2096958 |
agacagggttcaggagttca-------------aagcaaagcaatcatagcaattcgagaataagtgtcaagggactaatttttaaatcagaggaaacag |
2097044 |
T |
|
| Q |
318 |
cagagaaaccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaattcc |
417 |
Q |
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| T |
2097045 |
cagagaaaccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaattcc |
2097144 |
T |
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| Q |
418 |
aaatggtccacacaacaacgtgccaaact-aaagccagaccaaaccttggtttttcttagacctaaaactcgtnnnnnnnncctcaaaaactccttcaga |
516 |
Q |
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| T |
2097145 |
aaatggttcacacaacaacgtgccaaactaaaagccagaccaaactttggtttttcttagacctaagactcgtaaaaaaaa-ctcaaaaactccttcaga |
2097243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 2092747 - 2092905
Alignment:
| Q |
67 |
aatgtagcttatcaaggaaatcagtgttgaacttaaccaacatacttggccatctaagaagttcaattatcttgaaat---atcatatgaaggatagtta |
163 |
Q |
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|||| ||||| | ||||||| || |||||||||||||||||||||||||||| | |||| |||||||||| |||||| | | |||||||||||||| |
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| T |
2092747 |
aatgcagcttgttaaggaaaccaatgttgaacttaaccaacatacttggccagcaaagaggttcaattatgctgaaatgccagaagatgaaggatagtta |
2092846 |
T |
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| Q |
164 |
ctcgacaagaagttcaattggatttaaatttttgaaattcaataattatttcaaagaaaggg |
225 |
Q |
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| T |
2092847 |
ct---caagaagttcaatcaggtataattttttgaaattcaataattattacaaagacaggg |
2092905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 1562288 - 1562335
Alignment:
| Q |
67 |
aatgtagcttatcaaggaaatcagtgttgaacttaaccaacatacttg |
114 |
Q |
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|||| ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
1562288 |
aatgcagcttatcaaggaaaccaatgttgaacttaaccaacatacttg |
1562335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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