View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_12 (Length: 522)

Name: NF14445_low_12
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_12
NF14445_low_12
[»] chr2 (22 HSPs)
chr2 (1-521)||(10474195-10474723)
chr2 (442-521)||(10518558-10518638)
chr2 (262-355)||(10848989-10849082)
chr2 (447-513)||(9079984-9080053)
chr2 (442-521)||(10463620-10463700)
chr2 (446-521)||(10545183-10545259)
chr2 (437-512)||(7478676-7478750)
chr2 (442-521)||(10507384-10507464)
chr2 (387-423)||(10545274-10545310)
chr2 (388-421)||(10492906-10492939)
chr2 (456-521)||(28105308-28105373)
chr2 (437-507)||(7476511-7476580)
chr2 (437-496)||(10507523-10507583)
chr2 (371-422)||(10463712-10463763)
chr2 (468-518)||(10848829-10848877)
chr2 (437-486)||(10488770-10488820)
chr2 (388-422)||(10518657-10518691)
chr2 (456-518)||(27967353-27967415)
chr2 (390-419)||(7478514-7478543)
chr2 (380-421)||(7482218-7482259)
chr2 (390-423)||(10488945-10488978)
chr2 (390-422)||(10493021-10493053)
[»] chr5 (2 HSPs)
chr5 (438-522)||(33575328-33575412)
chr5 (437-521)||(33602590-33602675)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 10474723 - 10474195
Alignment:
Q  1 ccatacgtttttggcggattctgggctcgcaaccatatttcacaatcaacaacactaatgaggcatatatacattaacattgaccaatattatcccttgg 100  Q
    ||||| |||| ||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||| |||||  ||| |||||||||||||||| |||||    
T  10474723 ccatatgtttctggaggattctcggctcgcagccatatttcacaatcaacaacactgatgaggcatgtatactctaatattgaccaatattatcacttgg 10474624  T
Q  101 aagagaagcttcaagtaagacccaacaaatggnnnnnnnnncatgctcctcttatcgtatcagacaatgttgccaaaaggaaa-cgtgaaagagcaaact 199  Q
    ||||||||||||||||| | ||||||||||||          |||  |||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10474623 aagagaagcttcaagtagggcccaacaaatgggagaaaaaaaatgtgcctcttatcgtatcagacaatgttgccaaaaggaaaacatgaaagagcaaact 10474524  T
Q  200 catcgatgaaagttgctgctgttttctttcatggagaggatatcgtcagt----tcccttgggttttgagacgaagttgaagaacaaattcctcattcaa 295  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||    ||| ||  ||||||||||||||||||| ||||||| ||| ||||||    
T  10474523 catcgacgaaagttgctgctgttttctttcatggagaggatat-gtcagtattatccattttgttttgagacgaagttgaaaaacaaatgcctgattcaa 10474425  T
Q  296 atccattttatgcatgtattgcattctaagcttagatcctttggaaaatccactttttgttcagccgtctttgaaagcagatgtattttaagatatagtg 395  Q
    |||||||||||||||||||| | || || |||||||||| |||||||| |||||||||||||||  | |||||||  |||||||||||| ||||||||||    
T  10474424 atccattttatgcatgtatttcgttttaggcttagatccattggaaaacccactttttgttcaggtgcctttgaagccagatgtatttttagatatagtg 10474325  T
Q  396 tgatatacgaaaaccagttgttacttcannnnnnnnnnnnnatctacaaatcttatcttgtaaatagttttc-ttttgttattat----tgtgtgtgtag 490  Q
    |||||||||||||||||||||||||||              ||||||| ||||||||||||||| ||||||| ||||||||||||    |||||||||||    
T  10474324 tgatatacgaaaaccagttgttacttc-gcccccacctcccatctacagatcttatcttgtaaacagttttctttttgttattattgtgtgtgtgtgtag 10474226  T
Q  491 gaagcagttcatagggccaccattgcacgga 521  Q
    |||||||||| |||||||||||| |||||||    
T  10474225 gaagcagttcgtagggccaccatagcacgga 10474195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 442 - 521
Target Start/End: Complemental strand, 10518638 - 10518558
Alignment:
Q  442 caaatcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagcagttcatagggccaccattgcacgga 521  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  10518638 caaatcttattttgtaaattattttctttttgttattattgtgtgtgtaggaagcagttcgtcgggccaccatagcacgga 10518558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 10849082 - 10848989
Alignment:
Q  262 tgagacgaagttgaagaacaaattcctcattcaaatccattttatgcatgtattgcattctaagcttagatcctttggaaaatccactttttgt 355  Q
    ||||| || ||||||||| |||||||| |||||||||||||||||||||| |||   || || | ||||||||||||||||| |||||||||||    
T  10849082 tgagatgacgttgaagaaaaaattcctgattcaaatccattttatgcatgcattaagttttagggttagatcctttggaaaacccactttttgt 10848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 9079984 - 9080053
Alignment:
Q  447 cttatcttgtaaatagttttctttt-gttattatt--gtgtgtgtaggaagcagttcatagggccaccat 513  Q
    ||||| ||||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||||    
T  9079984 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccat 9080053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 521
Target Start/End: Complemental strand, 10463700 - 10463620
Alignment:
Q  442 caaatcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagcagttcatagggccaccattgcacgga 521  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||| ||| ||| ||||| || |||||||    
T  10463700 caaatcttattttgtaaataattttctttttgttattattgtgtttgtaggaagcaattcgtagagccacgatagcacgga 10463620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 521
Target Start/End: Complemental strand, 10545259 - 10545183
Alignment:
Q  446 tcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagcagttcatagggccaccattgcacgga 521  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||||||||| ||||   |||||||||| |||||||    
T  10545259 tcttatcttgtaaatagttttatttttgttattattgtgtttgtaggaagctgttcgccgggccaccatagcacgga 10545183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 512
Target Start/End: Original strand, 7478676 - 7478750
Alignment:
Q  437 atctacaaatcttatcttgtaaatagttttc-ttttgttattattgtgtgtgtaggaagcagttcatagggccacca 512  Q
    |||| |||||||||| |||||| |||||||| ||||||||||||  ||||||||||||||||||| |||||| ||||    
T  7478676 atcttcaaatcttattttgtaactagttttctttttgttattat--tgtgtgtaggaagcagttcttagggcaacca 7478750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 521
Target Start/End: Complemental strand, 10507464 - 10507384
Alignment:
Q  442 caaatcttatcttgtaaatagttttctt-ttgttattattgtgtgtgtaggaagcagttcatagggccaccattgcacgga 521  Q
    |||||||||  |||||| |  ||||||| ||||||||||||||||||||||||||||||| | || ||||||| |||||||    
T  10507464 caaatcttaatttgtaagttattttcttgttgttattattgtgtgtgtaggaagcagttcgtcggaccaccatagcacgga 10507384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 10545310 - 10545274
Alignment:
Q  387 gatatagtgtgatatacgaaaaccagttgttacttca 423  Q
    |||||||||||||||||||||||||||||||||||||    
T  10545310 gatatagtgtgatatacgaaaaccagttgttacttca 10545274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 421
Target Start/End: Complemental strand, 10492939 - 10492906
Alignment:
Q  388 atatagtgtgatatacgaaaaccagttgttactt 421  Q
    ||||||||||||||||||||||||||||||||||    
T  10492939 atatagtgtgatatacgaaaaccagttgttactt 10492906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 28105308 - 28105373
Alignment:
Q  456 taaatagttttcttttgttattattgtgtgtgtaggaagcagttcatagggccaccattgcacgga 521  Q
    ||||||||||| | ||| ||||||| ||||||||| | ||||||| |||||||||||| |||||||    
T  28105308 taaatagttttttattgctattattttgtgtgtagaacgcagttcgtagggccaccatagcacgga 28105373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 507
Target Start/End: Original strand, 7476511 - 7476580
Alignment:
Q  437 atctacaaatcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagcagttcatagggc 507  Q
    |||| |||||||||| |||| | |||||||||||| ||||||||||||  ||||||||||| ||||||||||    
T  7476511 atcttcaaatcttattttgtcactagttttctttttgttattattgtg--tgtaggaagcaattcatagggc 7476580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 496
Target Start/End: Complemental strand, 10507583 - 10507523
Alignment:
Q  437 atctacaaatcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagca 496  Q
    ||||| ||||||||| ||||| |||| |||||||| ||||||||||| |||||||||||||    
T  10507583 atctataaatcttattttgtatataggtttctttttgttattattgtatgtgtaggaagca 10507523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 10463763 - 10463712
Alignment:
Q  371 agcagatgtattttaagatatagtgtgatatacgaaaaccagttgttacttc 422  Q
    |||||||| ||||| ||||||||  ||||||||||||||||| |||||||||    
T  10463763 agcagatgcattttcagatatagcatgatatacgaaaaccagctgttacttc 10463712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 10848877 - 10848829
Alignment:
Q  468 ttttgttattattgtgtgtgtaggaagcagttcatagggccaccattgcac 518  Q
    |||||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  10848877 ttttgttattattgtgtgt--aggaagcagttcgtagggccaccatagcac 10848829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 10488820 - 10488770
Alignment:
Q  437 atctacaaatcttatcttgtaaatagttttcttt-tgttattattgtgtgt 486  Q
    |||| |||||||||| |||||| ||||||||||| ||||||||||||||||    
T  10488820 atcttcaaatcttattttgtaactagttttctttctgttattattgtgtgt 10488770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 10518691 - 10518657
Alignment:
Q  388 atatagtgtgatatacgaaaaccagttgttacttc 422  Q
    ||||||||||||||| |||||||||||||||||||    
T  10518691 atatagtgtgatatatgaaaaccagttgttacttc 10518657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 518
Target Start/End: Complemental strand, 27967415 - 27967353
Alignment:
Q  456 taaatagttttcttttgttattattgtgtgtgtaggaagcagttcatagggccaccattgcac 518  Q
    ||||||||||| | ||| ||||||| ||||||||| | ||||||| |||||||||||| ||||    
T  27967415 taaatagttttttattgctattattttgtgtgtagaacgcagttcgtagggccaccatagcac 27967353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Original strand, 7478514 - 7478543
Alignment:
Q  390 atagtgtgatatacgaaaaccagttgttac 419  Q
    ||||||||||||||||||||||||||||||    
T  7478514 atagtgtgatatacgaaaaccagttgttac 7478543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 7482218 - 7482259
Alignment:
Q  380 attttaagatatagtgtgatatacgaaaaccagttgttactt 421  Q
    ||||| |||||||| ||||||||||||||||||| |||||||    
T  7482218 atttttagatatagcgtgatatacgaaaaccagtagttactt 7482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 10488978 - 10488945
Alignment:
Q  390 atagtgtgatatacgaaaaccagttgttacttca 423  Q
    |||||||||||||||||||| |||||||||||||    
T  10488978 atagtgtgatatacgaaaacaagttgttacttca 10488945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 10493053 - 10493021
Alignment:
Q  390 atagtgtgatatacgaaaaccagttgttacttc 422  Q
    ||||||||||||||||||||| |||||||||||    
T  10493053 atagtgtgatatacgaaaacctgttgttacttc 10493021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 33575328 - 33575412
Alignment:
Q  438 tctacaaatcttatcttgtaaatagttttcttttgttattattgtgtgtgtaggaagcagttcatagggccaccattgcacggag 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33575328 tctacaaatcttatcttgtaaatagttttcttttgttattattgtgtgtgtaggaagcagttcatagggccatcattgcacggag 33575412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 437 - 521
Target Start/End: Complemental strand, 33602675 - 33602590
Alignment:
Q  437 atctacaaatcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagcagttcatagggccaccattgcacgga 521  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  33602675 atctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtaggaagcagtttgtagggccaccatagcacgga 33602590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University