View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_16 (Length: 490)
Name: NF14445_low_16
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 396069 - 395586
Alignment:
| Q |
1 |
cacaagctgacattattagcagcctcggcactgtcttgacgaaggactctcgttaggaacagaaccaagttcactccaactccaaagaatgccagtgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
396069 |
cacaagctgacattattagcagcctcggcactgtcttgacgaaggactctcgttaggaacagaaccaagttcactccaactccaaagaatgctagtgttg |
395970 |
T |
|
| Q |
101 |
ccagtgcttgattagctgcattcattcattcatttaatt--------------------acaattaccatgtatatataatgataatgatgaatcaaaca |
180 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
395969 |
ccagtgcttgattagctgcattcattcattcatttaatttcaacttagttcatttaattacaattaccatgtatatataatgataatgatgaatcaaaca |
395870 |
T |
|
| Q |
181 |
aatgattagcttatagtacctagcaagatgtatgcagttgtccatcctcctttactctttccatctgccacttctccattgacatgatttctttctgtcg |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
395869 |
aatgattagcttatagtacctagcaagatgtatgcagttgtccatcctcctttactctttccatctgccacttctccattgacatgatttccttctgtcg |
395770 |
T |
|
| Q |
281 |
cctattttaannnnnnnnnnnataaaaccaaacatatattatcagtatataattgatgaatccttcaatttggttggaaaatggtgatgttaacgacatt |
380 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
395769 |
cctattttaatttttttttttataaaaccaaacata---------tatataattgatgaatccttcaatttggttggcaaatggcgatgttaacgacatt |
395679 |
T |
|
| Q |
381 |
caccaagaataactaactaactaactaacctcaactacttcaatattgtcgggattgacattgttggggggtcctgctggttccatctgcata |
473 |
Q |
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| T |
395678 |
caccaagaataactaactaactaactaacctcaactacttcaatattgtcaggattgacattgttggggggtcctgctggttccatctgcata |
395586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 6 - 440
Target Start/End: Original strand, 3804646 - 3805112
Alignment:
| Q |
6 |
gctgacattattagcagcctcggcactgtcttgacgaaggactctcgttaggaacagaaccaagttcactccaactccaaagaatgccagtgttgccagt |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
3804646 |
gctgacattgttagcagcctcggcactgtcttgacgaaggactcttgttaggaacagaaccaagttcactccaacaccaaagaatgccagtgttgccaat |
3804745 |
T |
|
| Q |
106 |
gcttgattagctgcattcattca----------------ttcatttaattacaattaccatgtatatataatgataatgatgaatcaaaca---aatgat |
186 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||| |
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| T |
3804746 |
gcttgattagctgcattcgttcatttaatttccacttagttcatttaattacaattaccatgtatatatattgataatgatgagtcaaataattaatgat |
3804845 |
T |
|
| Q |
187 |
tagcttatagtacctagcaagatgtatgcagttgtccatcctcctttactctttccatctgccacttctccattgacatgatttctttctgtcgcctatt |
286 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||| || |||||| |||||||||| |||| || |||||| |
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| T |
3804846 |
tagtttacagtacctagcaagatgtatgcagttttccatcctccttttctcttcccaattgccatttttccattaacatgatttccttctatcacctatt |
3804945 |
T |
|
| Q |
287 |
ttaannnnnnnnnnnataaaaccaaac---------------atatattatcagtatataattgatgaatccttcaatttggttggaaaatggtgatgtt |
371 |
Q |
| |
|
|||| |||||||||||| ||||||||| | ||||||||||| ||||||||| | |||||| |||||||| ||||| |
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| T |
3804946 |
ttaa-tttattttttataaaaccaaacagtatataaccaaacatatattattaatatataattgacgaatccttc-acttggttcgaaaatggcaatgtt |
3805043 |
T |
|
| Q |
372 |
aacgacattcaccaagaataactaactaactaactaacctcaactacttcaatattgtcgggattgaca |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || ||||||| ||||| ||||||||| |
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|
| T |
3805044 |
aacgacattcaccaagaataactaactaactaaccgacctcagctgcttcaatcttgtcaggattgaca |
3805112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 52811273 - 52811385
Alignment:
| Q |
10 |
acattattagcagcctcggcactgtcttgacgaaggactctcgttaggaacagaaccaagttcactccaactccaaagaatgccagtgttgccagtgctt |
109 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| || | || |||||||||| |
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| T |
52811273 |
acattattagcagcttcggcattgtcttgaccaagaactctagttaggaacagaaccaagttcactccaactccaaagaaagctaaagtagccagtgctt |
52811372 |
T |
|
| Q |
110 |
gattagctgcatt |
122 |
Q |
| |
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|||| ||||||| |
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|
| T |
52811373 |
gattcactgcatt |
52811385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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