View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_18 (Length: 465)
Name: NF14445_low_18
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 3425361 - 3424914
Alignment:
| Q |
1 |
taggatgaagatattatcgacatgttgtttataaatctaattaaagtcttcataactaatgctctgatttggaaattgaggagcttggtgtttggtttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3425361 |
taggatgaagatattatcgacatgttgtttataaatctaattaaagtcttgataactaatgttctgatttggaaattgaggagcttggtgtttggtttac |
3425262 |
T |
|
| Q |
101 |
ttacttgtatagcaattaacaattaattcattcggtatctctcttaatcatcggtgtagatgtaataatccatcacatcataagaatttacaggttggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425261 |
ttacttgtatagcaattaacaattaattcattcggtatctctcttaatcatcggtgtagatgtaataatccatcacatcataagaatttacaggttggtt |
3425162 |
T |
|
| Q |
201 |
gagcacatggtttcaatatattcattttggctttaaacaaaaatggattgacattttttcatatnnnnnnnnnnnnnnnntctcgactttaggtatctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3425161 |
gagcacatggtttcaatatattcattttggctttaaacaaaaatggattgacattttttcatataaaacaaaaaataaaatctcgactttaggtatctca |
3425062 |
T |
|
| Q |
301 |
gtcaatgtcaatattttaatccacacatgcacatatacatattacatgattattaacaagaatcattgtggaagaagatcaatgcatagctatggttgat |
400 |
Q |
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| T |
3425061 |
gcacttgtcaatattttaatccacacatgcacatatacatattacatgattattaacaagaatcattgtggaagaagatcaatgaatagctatggttgat |
3424962 |
T |
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| Q |
401 |
gagggtcactttcaatttccttagccaattctcttgtgagtttgtcag |
448 |
Q |
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| T |
3424961 |
tagggtcactttcaatttccttagccaattctcttgtgagtttgtcag |
3424914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 181
Target Start/End: Original strand, 11914721 - 11914863
Alignment:
| Q |
35 |
atctaattaaagtcttcataactaatgctctgatttggaaattgaggagcttggtgtttggtttacttacttgtatagcaattaacaattaattcattcg |
134 |
Q |
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||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||| |||||| |||||||| ||| ||| |||||||||||| |
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| T |
11914721 |
atctaattaaagtctgaataactaattttctgatttggcgattgaggagctttttgtttagtttac----ttgtatagaaatcaactattaattcattca |
11914816 |
T |
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| Q |
135 |
gtatctctcttaatcatcggtgtagatgtaataatccatcacatcat |
181 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
11914817 |
gtatctctcttattcattggtgtagatgtaataatccatcacatcat |
11914863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 448
Target Start/End: Original strand, 11916422 - 11916507
Alignment:
| Q |
362 |
atcattgtggaagaagatcaatgcatagctatggttgatgagggtcactttcaatttccttagccaattctcttgtgagtttgtcag |
448 |
Q |
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| T |
11916422 |
atcattgtagaa-aagatcaaaacatagccatggttgattagggtcactttcaatttccttagccaattctcttatgagtttgtcag |
11916507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 6607363 - 6607320
Alignment:
| Q |
171 |
catcacatcataagaatttacaggttggttgagcacatggtttc |
214 |
Q |
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| T |
6607363 |
catcacatcataagaatttatatgttggttgagcacatggtttc |
6607320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 6607654 - 6607599
Alignment:
| Q |
35 |
atctaattaaagtcttcataactaatgctctgatttggaaattgaggagcttggtg |
90 |
Q |
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||||||||||||||| |||||||||| |||||||| | ||||||||||||||||| |
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| T |
6607654 |
atctaattaaagtctgcataactaattttctgattttgtaattgaggagcttggtg |
6607599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 6608254 - 6608317
Alignment:
| Q |
35 |
atctaattaaagtcttcataactaatgctctgatttggaaattgaggagcttggtgtttggtttact |
101 |
Q |
| |
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|||||||||||||| ||||||||| ||| |||| | ||||||||||| |||||||||||||||| |
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| T |
6608254 |
atctaattaaagtc---ataactaattttctaattttgtaattgaggagcgtggtgtttggtttact |
6608317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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