View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_19 (Length: 451)

Name: NF14445_low_19
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_19
NF14445_low_19
[»] chr5 (2 HSPs)
chr5 (20-442)||(33575389-33575818)
chr5 (396-439)||(33602566-33602609)
[»] chr2 (18 HSPs)
chr2 (140-337)||(10473858-10474060)
chr2 (335-439)||(10474110-10474214)
chr2 (243-341)||(10544955-10545053)
chr2 (335-437)||(10545098-10545200)
chr2 (140-341)||(10488401-10488605)
chr2 (229-323)||(27966979-27967073)
chr2 (241-341)||(10463426-10463526)
chr2 (140-302)||(10507031-10507195)
chr2 (229-341)||(10860466-10860577)
chr2 (338-434)||(10507302-10507398)
chr2 (346-437)||(10518484-10518575)
chr2 (28-87)||(10473241-10473298)
chr2 (20-81)||(7482328-7482390)
chr2 (229-339)||(10492569-10492679)
chr2 (355-439)||(9080042-9080126)
chr2 (375-435)||(10463575-10463635)
chr2 (232-331)||(10848546-10848642)
chr2 (380-439)||(28105354-28105413)
[»] chr3 (1 HSPs)
chr3 (21-79)||(48753234-48753293)


Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Complemental strand, 33575818 - 33575389
Alignment:
Q  20 ttttctactcatttgtgtttattgcttgtttactacttctctgttttgaggtctgcatcaataaggcagaagcttaaaataccaga-------ttttaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  33575818 ttttctactcatttgtgtttattgcttgtttactacttctctgttttgaggtctgcatcaataaggcagaagcttaaaataccagtagctagcttttaaa 33575719  T
Q  113 acagcaggattcttactagatttacactattctaagtagatttatatgagtatgactgctcttctataaattatatgacataagatttgatcagacccaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  33575718 acagcaggattcttactagatttacactattctaagtagatttatatgagtatgattgctcttctattaattatatgacataagatttgatcagacccaa 33575619  T
Q  213 aatttgtgcttagtgtaccactagtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33575618 aatttgtgcttagtgtaccactagtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaaatctctggaagaccaaatctaaat 33575519  T
Q  313 taaatcataatcatagtaacgagtcaagaccatacaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggt 412  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575518 taaatcataatcatagtaacgagtcaagaccataaaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggt 33575419  T
Q  413 ataaacctccgtgcaatggtggccctatga 442  Q
    |||||||||||||||||| |||||||||||    
T  33575418 ataaacctccgtgcaatgatggccctatga 33575389  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 439
Target Start/End: Original strand, 33602566 - 33602609
Alignment:
Q  396 tgcccatgaataatggtataaacctccgtgcaatggtggcccta 439  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  33602566 tgcccatgaataatggtataaacttccgtgctatggtggcccta 33602609  T

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Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 140 - 337
Target Start/End: Original strand, 10473858 - 10474060
Alignment:
Q  140 tattctaagtagatttatatgagtatgactgctcttctataaattatatgacataagatttgatcagacccaaaatttgtgcttagtgt-----accact 234  Q
    ||||||||||||||||||||||| |||| || |||| ||| |||||||||||||||||||||| |||||||| ||||| ||  ||||||     ||||||    
T  10473858 tattctaagtagatttatatgagaatgattggtcttttattaattatatgacataagatttgaccagacccagaatttatgtatagtgtcatgtaccact 10473957  T
Q  235 agtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataatcatagtaacga 334  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||    
T  10473958 agtagccatcatcctactaagaatgctacaagtgaattcaatttccaaagtgaagtgtctggaaaaccaaatctaaattaaatcataatcatagtaatga 10474057  T
Q  335 gtc 337  Q
    |||    
T  10474058 gtc 10474060  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 335 - 439
Target Start/End: Original strand, 10474110 - 10474214
Alignment:
Q  335 gtcaagaccatacaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatggtgg 434  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||| ||||||| |||||||    
T  10474110 gtcaagaccatacaacaaagaattcaagttaatttaacacttaccttatacttgaaagcactgcccatgaatattggtataaacttccgtgctatggtgg 10474209  T
Q  435 cccta 439  Q
    |||||    
T  10474210 cccta 10474214  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 341
Target Start/End: Original strand, 10544955 - 10545053
Alignment:
Q  243 tcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataatcatagtaacgagtcaaga 341  Q
    ||||||| |||||||||||||| |||||||| |||||||||  ||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  10544955 tcatcgtgctaagaatgctacaagtgaattcaatttccaaattgaaatctctggaagacccaaactaaattaaatcataatcatagtaaggagtcaaga 10545053  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 335 - 437
Target Start/End: Original strand, 10545098 - 10545200
Alignment:
Q  335 gtcaagaccatacaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatggtgg 434  Q
    |||||||||||||||||  ||||||||| |||||||||  ||||||||||| ||| ||||||||||||||| |||||||||||  ||||||| |||||||    
T  10545098 gtcaagaccatacaacaaagaattcaaggtaatttaacagttaccttatatctgaaagcactgcccatgaaaaatggtataaatttccgtgctatggtgg 10545197  T
Q  435 ccc 437  Q
    |||    
T  10545198 ccc 10545200  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 341
Target Start/End: Original strand, 10488401 - 10488605
Alignment:
Q  140 tattctaagtagatttatatgagtatgactgctcttctataaattatatgacataagatttgatcagacccaaaattt---gtgcttagtgtaccactag 236  Q
    ||||||||||||||||||||||  |||| | ||||| ||| | |||| ||||||||||||||| |||||||||| |||   |||  |  || ||||||||    
T  10488401 tattctaagtagatttatatgacaatgattactcttttattatttatttgacataagatttgaccagacccaaatttttcagtg--tcatggaccactag 10488498  T
Q  237 tagccatcatcgtactaa--gaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataatcatagtaacga 334  Q
    ||| ||||||  | ||||  ||||  |||| ||||||||  ||||||||| |||||||||||| |||| || ||||||||||||||||||||| | | ||    
T  10488499 tagtcatcattctcctaaaagaatcatacaagtgaattcagtttccaaagtgaagtctctggatgacccaaactaaattaaatcataatcatattgatga 10488598  T
Q  335 gtcaaga 341  Q
    |||||||    
T  10488599 gtcaaga 10488605  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 27966979 - 27967073
Alignment:
Q  229 accactagtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataat 323  Q
    ||||||||| |||||||||| |||||||||| || | |||||||| |||||||||| ||| ||||||||||||| || |||||||| ||||||||    
T  27966979 accactagtggccatcatcgcactaagaatgatataagtgaattcaatttccaaagtgaactctctggaagacccaaactaaattacatcataat 27967073  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 10463426 - 10463526
Alignment:
Q  241 catcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataatcatagtaacgagtcaag 340  Q
    ||||||| ||||||||| || ||| |||||||| |||||||||||| ||||||||||||||| || |||||||| ||||  |||||| ||| ||||||||    
T  10463426 catcatcatactaagaacgcaacaagtgaattcaatttccaaagcgcagtctctggaagacccaaactaaattagatcaatatcatattaatgagtcaag 10463525  T
Q  341 a 341  Q
    |    
T  10463526 a 10463526  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 302
Target Start/End: Original strand, 10507031 - 10507195
Alignment:
Q  140 tattctaagtagatttatatgagtatgactgctcttctataaattatatgacataagatttgatcagacccaaaatttgtgcttagtgt-----accact 234  Q
    ||||||||||||| ||||||||  |||| ||||||| ||| | ||||  |||||||||||||| |||||||||| ||| |||  |||||     ||| ||    
T  10507031 tattctaagtagacttatatgacaatgattgctcttttattatttat--gacataagatttgaccagacccaaattttttgcaaagtgtcatggaccgct 10507128  T
Q  235 agtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagacc 302  Q
    | ||| ||||||  |||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||    
T  10507129 a-tagtcatcattatactaagaatgctacaagtgaatttgatttccaaagtgaagtctttggaagacc 10507195  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 10860466 - 10860577
Alignment:
Q  229 accactagtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataatcatag 328  Q
    ||||||| ||||||||| || ||||||||||||||| | |||||| |||||||||| ||||| | ||||| |||  | |||||||| |||| ||||||||    
T  10860466 accactaatagccatca-cgcactaagaatgctacaagggaattcaatttccaaagtgaagtttatggaaaacccgaactaaattatatcaaaatcatag 10860564  T
Q  329 taacgagtcaaga 341  Q
    |||| ||||||||    
T  10860565 taacaagtcaaga 10860577  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 434
Target Start/End: Original strand, 10507302 - 10507398
Alignment:
Q  338 aagaccatacaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatggtgg 434  Q
    ||||||||||||||  |||||||||  |||| ||||  |||||| ||||||| |||||||||||||||||  ||||||||  ||||||| |||||||    
T  10507302 aagaccatacaacagagaattcaaggcaattcaacgggtaccttgtatttgaaagcactgcccatgaatacgggtataaatttccgtgctatggtgg 10507398  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 10518484 - 10518575
Alignment:
Q  346 acaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatggtggccc 437  Q
    |||||||  ||||||||  |||| |||| |||||||||||||||  |||||||||||||  |||||||||||  ||||||| ||||||||||    
T  10518484 acaacattaaattcaaggcaattcaacggttaccttatatttgaatgcactgcccatgagaaatggtataaatttccgtgctatggtggccc 10518575  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 10473241 - 10473298
Alignment:
Q  28 tcatttgtgtttattgcttgtttactacttctctgttttgaggtctgcatcaataaggca 87  Q
    |||||||| ||||||| ||||||  |||| ||||||||||||||||||||||||||||||    
T  10473241 tcatttgtctttattgtttgttt--tactactctgttttgaggtctgcatcaataaggca 10473298  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 7482390 - 7482328
Alignment:
Q  20 ttttctactcatttgtgtttattgcttgttt-actacttctctgttttgaggtctgcatcaat 81  Q
    |||||||||||||| |||| |||| |||||| |||| ||||||||||||||| ||||||||||    
T  7482390 ttttctactcatttttgttaattgtttgttttactaattctctgttttgaggcctgcatcaat 7482328  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 10492569 - 10492679
Alignment:
Q  229 accactagtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataatcatag 328  Q
    ||||||| ||| |||||| |||| || |||| | |||||||||||   |||||||| ||||||||| ||||||| || |||||| ||||  ||||||||     
T  10492569 accactactagtcatcattgtacaaaaaatgatccaggtgaattcagattccaaagtgaagtctctagaagaccgaaactaaataaaattgtaatcatat 10492668  T
Q  329 taacgagtcaa 339  Q
    ||| |||||||    
T  10492669 taatgagtcaa 10492679  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 9080126 - 9080042
Alignment:
Q  355 aattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatggtggcccta 439  Q
    |||||||| ||||| |||  ||||||||||||||  |||||| |||||||||| |||||||||| ||   || ||||||||||||    
T  9080126 aattcaaggtaattcaacaattaccttatatttgtaagcacttcccatgaatactggtataaacttctccgctatggtggcccta 9080042  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 10463575 - 10463635
Alignment:
Q  375 ttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatggtggc 435  Q
    ||||||||||||||| |||||| |||||||| |||||||||||  ||||||| || |||||    
T  10463575 ttaccttatatttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggc 10463635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 331
Target Start/End: Original strand, 10848546 - 10848642
Alignment:
Q  232 actagtagccatcatcgtactaagaatgctacaggtgaattcgatttccaaagcgaagtctctggaagaccaaatctaaattaaatcataatcatagtaa 331  Q
    |||||||||||||| |||||||||||| ||| | ||||| ||  ||||||||| ||||||||| ||| || ||   ||||||| ||||||||||||||||    
T  10848546 actagtagccatcaacgtactaagaatcctataagtgaaatcagtttccaaagtgaagtctcttgaa-actaa--ttaaattacatcataatcatagtaa 10848642  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 28105413 - 28105354
Alignment:
Q  380 ttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatggtggcccta 439  Q
    ||||||| || |||| | |||||||||| |||||||||| ||||||| ||||||||||||    
T  28105413 ttatattggaaagcattacccatgaatactggtataaacttccgtgctatggtggcccta 28105354  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 48753293 - 48753234
Alignment:
Q  21 tttctactcatttgtgtttattgcttg-tttactacttctctgttttgaggtctgcatca 79  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  48753293 tttctactcatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatca 48753234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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