View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_21 (Length: 437)
Name: NF14445_low_21
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 47802792 - 47803036
Alignment:
| Q |
9 |
acatcatcaacatacattaacaatgttgtggatgtgtttgtgcctttcttggtgaactaggaatgatttgaatggccttgcccttgggtatatccttgaa |
108 |
Q |
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| T |
47802792 |
acatcatcaacatacattaacaatgttgtggatgtatttgtgcctttcttggtgaactaggaatgatttgaatggccttgcccttgggtatatccttgaa |
47802891 |
T |
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| Q |
109 |
ctataagagatgaagtcaatttctcataccattttgctagcttatttaaggccataaaatggtttcaataacttgattagatttatagcatgacactccc |
208 |
Q |
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| T |
47802892 |
ctataagagatgaagtcaatttctcataccattttgctagcttattcaaggccataaaatggtttcaataacttgattagatttatagcatgacactccc |
47802991 |
T |
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| Q |
209 |
tcaagaatcaccagaaatacattattttcatcaagttgatgtaag |
253 |
Q |
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| T |
47802992 |
tcaagaatcaccagaaacacattattttcatcaaattgatgtaag |
47803036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 246 - 419
Target Start/End: Original strand, 47803610 - 47803783
Alignment:
| Q |
246 |
gatgtaagtacgagttattgatagcaagtaaatctagaaccattaacgagaattttggaatcatcacttgaaaataattgtgtaactctctcgccttgta |
345 |
Q |
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| T |
47803610 |
gatgtaagtacgagttattgatagcaagtaaatctagaaccattaacgagaattttggaatcatcacttgaaaatgattgtgtaactctctcgccttgca |
47803709 |
T |
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| Q |
346 |
aaaccacaaagtaaacatgattaagtgaaggcaaaggttccatcgatacaacttgattttgtacgagagtattg |
419 |
Q |
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| T |
47803710 |
aaaccacaaagtaaacatgattaagcgaaggcaaaggttccatcaatacaacttgattttgtacgagggtattg |
47803783 |
T |
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