View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14445_low_23 (Length: 430)
Name: NF14445_low_23
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 277 - 417
Target Start/End: Complemental strand, 10216836 - 10216694
Alignment:
| Q |
277 |
aatttaagaaaatgtaggtgattgaatgtcaatcaccgaaactttcaatgtgaagtgttgaccctacatagggtatacttcaattatatctcgataggta |
376 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | |||| || |
|
|
| T |
10216836 |
aatttaagaaaatgtaagtgattgaatgtcaatcaccgaaactttcaatgtgaagtgtcgaccctacatagggtatacttaaattatatcccaatagata |
10216737 |
T |
|
| Q |
377 |
attatgccaatgtctc--actcacagatggagatgtgtagcat |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10216736 |
attatgccaatgtctcatactcacagatggagatgtgtagcat |
10216694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 10217213 - 10217117
Alignment:
| Q |
8 |
tgcattaagcccggcattctcggccaaagttcttggaatcatctcaaagctttcagcaaatttcgctatagcatactgatccaatctgtagaaccat |
104 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10217213 |
tgcatttagtccggcattctcagccaaagttcttggaatcatctcaaagctttcagcaaatttcgctatagcatactgatccaatctgtagaaccat |
10217117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 10217027 - 10216919
Alignment:
| Q |
170 |
gttctgcattaaaaattctaagacgaagcttggaaaaactttagtgagaaac-atattgacacaaccctataaactgcattgaaccaaaaataattaatc |
268 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| |||||| |||| || ||| || |||||||||||||||||| |||||| ||||| |
|
|
| T |
10217027 |
gttctgcattaaaaattctaagatcgagcttgtaaaaactttagcgagaaaatatatcgat-caaaccaataaactgcattgaaccacaaataaataatc |
10216929 |
T |
|
| Q |
269 |
atgataataa |
278 |
Q |
| |
|
|||||||||| |
|
|
| T |
10216928 |
atgataataa |
10216919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 10673181 - 10673085
Alignment:
| Q |
8 |
tgcattaagcccggcattctcggccaaagttcttggaatcatctcaaagctttcagcaaatttcgctatagcatactgatccaatctgtagaaccat |
104 |
Q |
| |
|
|||||| | ||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
|
|
| T |
10673181 |
tgcatttaacccagcattctccgccaatgttctaggaatcatctcaaagctttcagcaaattttgctatagcatactgatccaatctgcagagccat |
10673085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 27282275 - 27282241
Alignment:
| Q |
270 |
tgataataatttaagaaaatgtaggtgattgaatg |
304 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27282275 |
tgataataatttaagaaaatggaggtgattgaatg |
27282241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University