View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_25 (Length: 421)
Name: NF14445_low_25
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 43538309 - 43538044
Alignment:
| Q |
20 |
tccctaccgttaaagaatcttgtagattgcggtctttgccgtcaatgcaacgaaggccattcgattgaaatcaaatggtccaaatttacaattgattaaa |
119 |
Q |
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| T |
43538309 |
tccctaccgttaaagaatcttgtagattgcggtctttgccgtcaatgcaacgaaggccattcgattgaaatcaaatggtccaaattttcaattgattaaa |
43538210 |
T |
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| Q |
120 |
cgagtcaaagacatttttattagaacaacaactagcaacataagaataataaaaaagataaatcacaagacaatgaacacaatcgtttacgattgatttg |
219 |
Q |
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| T |
43538209 |
cgagtcaaagacatttttattagaacaacaactagcaacataagaataataaaaaagataaatcacaagacaatgaacacaatcgtttacgattgatttg |
43538110 |
T |
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| Q |
220 |
gaaacaattatagttctatattattgcttgagtgattagtttaaagtgttacaaatcatatatata |
285 |
Q |
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| T |
43538109 |
gaaacaattatagttctatattattacttgagtgattaatttacagtgttacaagtcatatatata |
43538044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 340 - 411
Target Start/End: Complemental strand, 43538036 - 43537965
Alignment:
| Q |
340 |
atgaaagaaaaggagcaaatgtcacgacgctcgctcaactctctcgctccttaccgatcttttgtgcctatg |
411 |
Q |
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| T |
43538036 |
atgaaagaataggagcaaatgtcacgacggtcgctcaactctctcgccccttaccgatcttttgtgcctatg |
43537965 |
T |
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