View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_26 (Length: 408)

Name: NF14445_low_26
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_26
NF14445_low_26
[»] chr7 (36 HSPs)
chr7 (15-408)||(6864731-6865124)
chr7 (75-218)||(660831-660975)
chr7 (111-326)||(22069945-22070161)
chr7 (79-251)||(20352004-20352177)
chr7 (90-321)||(22063481-22063713)
chr7 (90-254)||(22100399-22100564)
chr7 (79-254)||(20374491-20374667)
chr7 (75-218)||(22080810-22080954)
chr7 (76-254)||(20133302-20133481)
chr7 (110-251)||(20338833-20338975)
chr7 (122-251)||(20361233-20361363)
chr7 (75-145)||(14076694-14076764)
chr7 (75-145)||(14386722-14386792)
chr7 (124-227)||(20361063-20361167)
chr7 (87-188)||(19604459-19604561)
chr7 (92-144)||(18952906-18952958)
chr7 (92-144)||(18982953-18983005)
chr7 (92-144)||(18997599-18997651)
chr7 (76-227)||(20126170-20126321)
chr7 (67-214)||(20140794-20140942)
chr7 (77-198)||(15571881-15572003)
chr7 (76-138)||(18514772-18514834)
chr7 (75-137)||(29454087-29454149)
chr7 (77-197)||(13416897-13417018)
chr7 (91-144)||(19645630-19645683)
chr7 (91-198)||(1985955-1986063)
chr7 (77-145)||(29867252-29867320)
chr7 (77-145)||(29874527-29874595)
chr7 (77-145)||(29881272-29881340)
chr7 (114-144)||(9807841-9807871)
chr7 (91-145)||(19637217-19637271)
chr7 (107-144)||(19597671-19597708)
chr7 (79-144)||(29859471-29859536)
chr7 (276-332)||(22088421-22088477)
chr7 (76-144)||(24385218-24385286)
chr7 (110-138)||(36263076-36263104)
[»] chr4 (9 HSPs)
chr4 (75-218)||(11970966-11971110)
chr4 (77-235)||(11981669-11981828)
chr4 (90-198)||(53774802-53774911)
chr4 (80-144)||(3557743-3557807)
chr4 (80-144)||(3565761-3565825)
chr4 (90-145)||(6113095-6113150)
chr4 (79-137)||(3560946-3561004)
chr4 (91-144)||(1686285-1686338)
chr4 (110-138)||(19359160-19359188)
[»] scaffold0867 (1 HSPs)
scaffold0867 (90-254)||(4668-4833)
[»] chr1 (6 HSPs)
chr1 (76-305)||(15961083-15961313)
chr1 (79-144)||(39379049-39379114)
chr1 (75-159)||(4570929-4571013)
chr1 (75-144)||(21855367-21855436)
chr1 (75-144)||(4014949-4015018)
chr1 (73-145)||(10219001-10219073)
[»] chr6 (10 HSPs)
chr6 (75-198)||(20770612-20770736)
chr6 (75-145)||(17369680-17369750)
chr6 (91-198)||(6947880-6947988)
chr6 (91-145)||(6921350-6921404)
chr6 (93-198)||(6954521-6954627)
chr6 (91-198)||(6935218-6935326)
chr6 (107-160)||(33576171-33576224)
chr6 (107-198)||(5978989-5979081)
chr6 (99-145)||(6942975-6943021)
chr6 (99-144)||(14749414-14749459)
[»] chr2 (6 HSPs)
chr2 (75-188)||(14514872-14514986)
chr2 (80-144)||(18908798-18908862)
chr2 (80-144)||(18913546-18913610)
chr2 (80-144)||(18920754-18920818)
chr2 (100-159)||(20980606-20980665)
chr2 (89-159)||(25377076-25377146)
[»] chr5 (4 HSPs)
chr5 (75-145)||(18964814-18964884)
chr5 (93-188)||(29597554-29597650)
chr5 (75-144)||(24330883-24330952)
chr5 (107-144)||(23086799-23086836)
[»] chr8 (1 HSPs)
chr8 (79-194)||(27618457-27618573)
[»] scaffold0354 (1 HSPs)
scaffold0354 (79-145)||(7479-7545)
[»] chr3 (1 HSPs)
chr3 (79-145)||(3625750-3625816)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 6864731 - 6865124
Alignment:
Q  15 tatcactctcctccaaaaggcataatggccccatataaaagtcaacataaacatgatcacctatttgaagattacgataactagttttaaggaactgagt 114  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6864731 tatcactctcctccgaaaggcataatggcaccatataaaagtcaacataaacatgatcacctatttgaagattatgataactagttttaaggaactgagt 6864830  T
Q  115 ccaagactcttcaactccaaattccttcattaaccatattacaaatgagtttatttgaaatcatgagaaaaacagagacaatcctttaacacgcttagat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  6864831 ccaagactcttcaactccaaattccttcattaaccatattacaaatgagtttgtttgaaatcatgagaaaaatagagacaatcctttaacacgcttagat 6864930  T
Q  215 ttggggcaacaattggcacttcaatgaaaccctgaggaggagacaaacgagtatgtatcttagtgtccaaatgaagtgaaataatctcaaatttctcaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6864931 ttggggcaacaattggcacttcaatgaaaccctgaggaggagacaaacgagtatgtatcttagtgtccaaatgaagtgaaataatctcaaattgctcaat 6865030  T
Q  315 actaatatccttccaattgtaacgtaaagtagagtaattgcgaatttccaaccaagtaacactaccaccaagatgcacaacatcataaataact 408  Q
    | |||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6865031 agtaatatcctttcaattgtaacataaagtggagtaattgcgaattgccaaccaagtaacactaccaccaagatgcacaacatcataaataact 6865124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 660831 - 660975
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaa 173  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||||||   |||||| || ||| |||||| ||||||    
T  660831 ctatttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaacgagtttgtttgaa 660930  T
Q  174 atcatgagaaaaacagagacaatcctttaacacgcttagatttgg 218  Q
    ||| ||| ||||||| ||||||||||||||||| |||||||||||    
T  660931 atcgtgacaaaaacaaagacaatcctttaacacacttagatttgg 660975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 111 - 326
Target Start/End: Complemental strand, 22070161 - 22069945
Alignment:
Q  111 gagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatcatgagaaaaacagagacaatcctttaacacgct 209  Q
    ||||||||||||||| ||||||||||| |||||||  |||||| | ||| ||||||  ||||||||||||||||||||| |||||||||||||| || ||    
T  22070161 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttgaaatcatgagaaaaacaaagacaatcctttaaaacact 22070062  T
Q  210 tagatttggggcaacaattggcacttcaatgaaaccctgaggaggagacaaacgagtatgtatcttagtgtccaaatgaagtgaaataatctcaaatttc 309  Q
    |||||||||   ||||| ||||||||||  |||||| ||||||||  ||||   ||||||| |||  ||  |||||| ||||||||||||| |||||| |    
T  22070061 tagatttggtataacaaatggcacttcatcgaaaccgtgaggaggcaacaacttagtatgtgtctcggtacccaaatcaagtgaaataatcacaaattcc 22069962  T
Q  310 tcaatactaatatcctt 326  Q
    |||||| ||||||||||    
T  22069961 tcaatagtaatatcctt 22069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 20352177 - 20352004
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatca 177  Q
    ||||||||||  ||||||| ||||||  |  |||||||| || ||||||||||||||||||||||||  |||||||||||| ||||||| |||| |||||    
T  20352177 ttgaagattatcataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagtttgtttgtaatca 20352078  T
Q  178 tgagaaaaacagagacaatcctttaacacgcttagatttggggcaacaattggcacttcaatgaaaccctgagg 251  Q
    || |||||||| ||||||||||||||||| ||||||| |||  |||| |||||||||||  ||||||| |||||    
T  20352077 tgtgaaaaacaaagacaatcctttaacacacttagatatggtacaacgattggcacttctgtgaaaccttgagg 20352004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 22063713 - 22063481
Alignment:
Q  90 gataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatcatgagaaaaaca 188  Q
    |||||||| |||| |  ||||||||||||||||||| || ||||||||||||||||  |||||| ||||| ||||||| ||||||||||||| |||||||    
T  22063713 gataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagtttgtttgaaatcatgaaaaaaaca 22063614  T
Q  189 gagacaatcctttaacacgcttagatttggggcaacaattggcacttcaatgaaaccctgaggaggagacaaacgagtatgtatcttagtgtccaaatga 288  Q
     ||| |||| ||||| || ||||| |||||   ||||| ||| |||||| ||||||| ||||||||| ||||   ||||| |  || |||| |||||| |    
T  22063613 aagataatcatttaagacacttagttttggtataacaaatggtacttcactgaaaccatgaggaggaaacaatttagtatatgcctcagtgcccaaatca 22063514  T
Q  289 agtgaaataatctcaaatttctcaatactaata 321  Q
    |||||||||||| |||||| | ||||| |||||    
T  22063513 agtgaaataatcacaaattgcccaatagtaata 22063481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 254
Target Start/End: Complemental strand, 22100564 - 22100399
Alignment:
Q  90 gataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatcatgagaaaaaca 188  Q
    |||||||| |||| |  ||||||||||||||||||| ||||||||||| |||||||  |||||| | ||| ||||||| |||||||||||||||||||||    
T  22100564 gataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaaca 22100465  T
Q  189 gagacaatcctttaacacgcttagatttggggcaacaattggcacttcaatgaaaccctgaggagg 254  Q
     ||| |||| ||||| || |||||||| ||   |||||||||||||||| ||||||| ||||||||    
T  22100464 aagataatcatttaagacacttagattaggtataacaattggcacttcattgaaaccatgaggagg 22100399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 20374491 - 20374667
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatca 177  Q
    ||||||||||  ||||||| ||||||  |  ||| |||| || ||| ||||||||||||||||||||  |||||||||||| ||||||| |||| |||||    
T  20374491 ttgaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagtttgtttgtaatca 20374590  T
Q  178 tgagaaaaacagagacaatcctttaacacgcttagatttggggcaacaattggcacttcaatgaaaccctgaggagg 254  Q
    || |||||||| ||||||||||||| ||| ||||||| ||| |||||||| |||||||| ||||| || ||||||||    
T  20374591 tgtgaaaaacaaagacaatcctttagcacacttagatatggtgcaacaatcggcacttccatgaagccttgaggagg 20374667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 22080954 - 22080810
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaa 173  Q
    ||||||| |||||  |||||||| |||| |  ||| ||||||||||||||| ||||||||||| |||||||  |||||| | ||| ||||||| ||||||    
T  22080954 ctatttggagattctgataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttgaa 22080855  T
Q  174 atcatgagaaaaacagagacaatcctttaacacgcttagatttgg 218  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||    
T  22080854 atcatgagaaaaacaaagacaatcctttaacatacttagatttgg 22080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 20133302 - 20133481
Alignment:
Q  76 tatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaa 174  Q
    ||||||||||||  |||| ||| | ||||  |||||| ||||||| ||||||||||||||||| ||||||  ||||| ||| |||||||||| |||| ||    
T  20133302 tatttgaagattgtgatagctaatgttaaataactgaatccaagaatcttcaactccaaattctttcatttgccatactaccaaatgagtttgtttgtaa 20133401  T
Q  175 tcatgagaaaaacagagacaatcctttaacacgcttagatttggggcaacaattggcacttcaatgaaaccctgaggagg 254  Q
    ||||| |||||||| |  |||||||||||||  ||||||| |||  ||||||| || |||||  ||||||||||||||||    
T  20133402 tcatgtgaaaaacacatgcaatcctttaacaaacttagatatggtacaacaataggtacttcggtgaaaccctgaggagg 20133481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 20338975 - 20338833
Alignment:
Q  110 tgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatcatgagaaaaacagagacaatcctttaacacgc 208  Q
    ||||||||||| ||||||||||| ||||||||||||  ||||||||| |||||||||| || | ||||||| |||||||| ||| | || |||||||| |    
T  20338975 tgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagttttttggtaatcatgggaaaaacaaagatagtcgtttaacacac 20338876  T
Q  209 ttagatttggggcaacaattggcacttcaatgaaaccctgagg 251  Q
    ||| ||||||  ||||||| ||| ||||| ||||||| |||||    
T  20338875 ttaaatttggtacaacaatcggcgcttcagtgaaaccttgagg 20338833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 20361233 - 20361363
Alignment:
Q  122 tcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatcatgagaaaaacagagacaatcctttaacacgcttagatttgggg 220  Q
    |||||||||||||||||||| |||  | | || || |||||||||| |||| ||||||| |||||||| ||||||||||||| ||| ||||||| |||      
T  20361233 tcttcaactccaaattcctttatttcctaaatcacaaaatgagtttgtttgtaatcatgtgaaaaacaaagacaatcctttagcacacttagatatggta 20361332  T
Q  221 caacaattggcacttcaatgaaaccctgagg 251  Q
    ||||||||||||||||  ||||||| |||||    
T  20361333 caacaattggcacttccgtgaaaccttgagg 20361363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 14076764 - 14076694
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||||||  |||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  14076764 ctatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatt 14076694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 14386792 - 14386722
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||||||  |||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  14386792 ctatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatt 14386722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 20361167 - 20361063
Alignment:
Q  124 ttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatcatgagaaaaacagagacaatcctttaacacgcttagatttggggca 222  Q
    ||||||||||||||||||||||   |||| ||| |||||||||| |||| ||||||| |||||||| |||||||||| |||||| ||||||| |||  ||    
T  20361167 ttcaactccaaattccttcatttctcataatacaaaatgagtttgtttgtaatcatgtgaaaaacaaagacaatcctctaacacacttagatatggtaca 20361068  T
Q  223 acaat 227  Q
    |||||    
T  20361067 acaat 20361063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 19604459 - 19604561
Alignment:
Q  87 tacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatcatgagaaaa 185  Q
    |||| |||||| |||||||||| |||||||| || |||||||||||||||||||||||   |||||| | ||| |||||||  |  ||||||||||||||    
T  19604459 tacggtaactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaa 19604558  T
Q  186 aca 188  Q
    |||    
T  19604559 aca 19604561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 18952906 - 18952958
Alignment:
Q  92 taactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcat 18952958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 18982953 - 18983005
Alignment:
Q  92 taactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcat 18983005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 18997599 - 18997651
Alignment:
Q  92 taactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcat 18997651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 20126170 - 20126321
Alignment:
Q  76 tatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaa 174  Q
    ||||||||||||| | ||||| | ||||| ||| ||| ||||||| ||||||  ||||||||| ||||||   ||||||||||| ||||||| |  | ||    
T  20126170 tatttgaagattaaggtaact-gatttaaagaattgattccaagaatcttcatatccaaattctttcattttacatattacaaaatgagtttgtacgtaa 20126268  T
Q  175 tcatgagaaaaacagagacaatcctttaacacgcttagatttggggcaacaat 227  Q
    ||||| | |||||| ||||| ||||||||||| |||| ||||||  |||||||    
T  20126269 tcatggggaaaacaaagacagtcctttaacacacttatatttggtacaacaat 20126321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 214
Target Start/End: Original strand, 20140794 - 20140942
Alignment:
Q  67 atgatcacctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatatta-caaatgagtt 165  Q
    |||||||  ||||||||||||  |||| ||| | ||||  | |||| ||||||| | ||||||||||||||||||||||  ||||| || ||||||||||    
T  20140794 atgatcatatatttgaagattgtgatagctaatgttaaaaagctgaatccaagaattttcaactccaaattccttcatttgccatactaccaaatgagtt 20140893  T
Q  166 tatttgaaatcatgagaaaaacagagacaatcctttaacacgcttagat 214  Q
    | |||| ||||||  |||||||| |||   ||||||||||  |||||||    
T  20140894 tgtttgtaatcatatgaaaaacaaagattgtcctttaacaaacttagat 20140942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 15571881 - 15572003
Alignment:
Q  77 atttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaat 175  Q
    |||||||||||   ||||||| ||||| |||| |||  ||||||||||||||||||||| ||| |||||  ||| || || ||||| |||   |||||||    
T  15571881 atttgaagatttgaataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaat 15571980  T
Q  176 catgagaaaaacagagacaatcc 198  Q
    ||| ||||||||| |||||||||    
T  15571981 cataagaaaaacaaagacaatcc 15572003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 18514772 - 18514834
Alignment:
Q  76 tatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattc 138  Q
    ||||||||||||   ||||||| |||||||||| ||||||||||| | |||||||||||||||    
T  18514772 tatttgaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattc 18514834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 29454087 - 29454149
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaatt 137  Q
    ||||||||||||   |||||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  29454087 ctatttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatt 29454149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 13416897 - 13417018
Alignment:
Q  77 atttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatatta-caaatgagtttatttgaaat 175  Q
    ||||||| |||  |||||||| |||||| ||| | |  |||||||||||||||||||||||||||||||  |||||| |  ||||  ||||  || ||||    
T  13416897 atttgaaaatttagataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaat 13416996  T
Q  176 catgagaaaaacagagacaatc 197  Q
    ||| ||||||||| ||||||||    
T  13416997 cataagaaaaacaaagacaatc 13417018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 19645630 - 19645683
Alignment:
Q  91 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||| ||||||| ||| ||||||| |||||||||| |||||||||||||||    
T  19645630 ataactaattttaagtaacagagtccatgactcttcaattccaaattccttcat 19645683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 1985955 - 1986063
Alignment:
Q  91 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatcatgagaaaaacag 189  Q
    ||||||| ||||||  || ||||||||||| |||||||| |||||||||||||||  ||| |  || ||||| ||||  |||||||||| ||||||| ||    
T  1985955 ataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttcttgaaatcataagaaaaatag 1986054  T
Q  190 agacaatcc 198  Q
    || ||||||    
T  1986055 aggcaatcc 1986063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 29867320 - 29867252
Alignment:
Q  77 atttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||||| | |||||| || ||||||| ||||||||||| |||||||| || |||| |||||||    
T  29867320 atttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatt 29867252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 29874595 - 29874527
Alignment:
Q  77 atttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||||  |||||||| ||||||| ||  |||||||||| |||||||| ||||||| |||||||    
T  29874595 atttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatt 29874527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 29881340 - 29881272
Alignment:
Q  77 atttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    ||||||||| || | |||||| || ||||||| ||||||||||| |||||||| ||||||| |||||||    
T  29881340 atttgaagactatggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatt 29881272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 144
Target Start/End: Complemental strand, 9807871 - 9807841
Alignment:
Q  114 tccaagactcttcaactccaaattccttcat 144  Q
    |||||||||||||||||||||||||||||||    
T  9807871 tccaagactcttcaactccaaattccttcat 9807841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 19637217 - 19637271
Alignment:
Q  91 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    ||||||| ||||||||| | || |||| ||||||| |||||||||||||||||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatt 19637271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 19597671 - 19597708
Alignment:
Q  107 aactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  19597671 aactgagtccatgactcttcaacttcaaattccttcat 19597708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 29859536 - 29859471
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    |||||||||  |||||||| ||||||| ||  | |||||||| |||||||||||||||| ||||||    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcat 29859471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 22088477 - 22088421
Alignment:
Q  276 agtgtccaaatgaagtgaaataatctcaaatttctcaatactaatatccttccaatt 332  Q
    |||| |||||| ||||||||||||| |||||| ||||||| ||||| |||| |||||    
T  22088477 agtgcccaaatcaagtgaaataatcacaaattgctcaatagtaatacccttgcaatt 22088421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 24385286 - 24385218
Alignment:
Q  76 tatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||||||||| ||| |||| ||||||| ||  || ||||||||| |||||||||||| | ||||||    
T  24385286 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcat 24385218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 36263104 - 36263076
Alignment:
Q  110 tgagtccaagactcttcaactccaaattc 138  Q
    |||||||||||||||||||||||||||||    
T  36263104 tgagtccaagactcttcaactccaaattc 36263076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 11970966 - 11971110
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaa 173  Q
    |||||||||||||| |||||||| || |||| || ||||||||||||||||| ||||||||||||||||||  |||||| || |||||||||| ||  ||    
T  11970966 ctatttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagtttgttcaaa 11971065  T
Q  174 atcatgagaaaaacagagacaatcctttaacacgcttagatttgg 218  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  11971066 atcatgagaaaaacaaagacaatcctctaacacgcttagatttgg 11971110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 11981669 - 11981828
Alignment:
Q  77 atttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaat 175  Q
    |||||||||||| |||||||| ||||||| ||  ||||||| |||||||| ||||||||||||||||||  |||||| || |||||||||| ||  ||||    
T  11981669 atttgaagattaagataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagtttgttgaaaat 11981768  T
Q  176 catgagaaaaacagagacaatcctttaacacgcttagatttggggcaacaattggcactt 235  Q
    ||||||||||||| |||||||||| |||||| |||| ||||||  ||| || ||||||||    
T  11981769 catgagaaaaacaaagacaatcctgtaacacacttacatttggcacaagaaatggcactt 11981828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 53774911 - 53774802
Alignment:
Q  90 gataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatcatgagaaaaaca 188  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  |||||| || |||||||||| ||| ||||||| |||||||||    
T  53774911 gataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaaca 53774812  T
Q  189 gagacaatcc 198  Q
     | |||||||    
T  53774811 aatacaatcc 53774802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 3557807 - 3557743
Alignment:
Q  80 tgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||| | |||||||| ||||||| || |||||||||||||||||||| ||||||||||||||    
T  3557807 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcat 3557743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 3565825 - 3565761
Alignment:
Q  80 tgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||| | |||||||| ||||||| || |||||||||||||||||||| ||||||||||||||    
T  3565825 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcat 3565761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 6113150 - 6113095
Alignment:
Q  90 gataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||| ||  ||||||||||||||||||||||| ||||||||||||| |||||    
T  6113150 gataactaattcgaaggaactgagtccaagactctttaactccaaattccatcatt 6113095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 3560946 - 3561004
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaatt 137  Q
    |||||||| | |||||||| ||||||| || |||||||||||||||||||| |||||||    
T  3560946 ttgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaatt 3561004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 1686285 - 1686338
Alignment:
Q  91 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    |||||||  |||||| || |||||||||||||| ||||| ||||||||||||||    
T  1686285 ataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcat 1686338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 19359188 - 19359160
Alignment:
Q  110 tgagtccaagactcttcaactccaaattc 138  Q
    |||||||||||||||||||||||||||||    
T  19359188 tgagtccaagactcttcaactccaaattc 19359160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 254
Target Start/End: Original strand, 4668 - 4833
Alignment:
Q  90 gataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatcatgagaaaaaca 188  Q
    |||||||| |||| |  ||||||||||||||||||| ||||||||||| |||||||  |||||| | ||| ||||||| |||||||||||||||||||||    
T  4668 gataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaaca 4767  T
Q  189 gagacaatcctttaacacgcttagatttggggcaacaattggcacttcaatgaaaccctgaggagg 254  Q
     ||| |||| ||||| || |||||||| ||   |||||||||||||||| ||||||| ||||||||    
T  4768 aagataatcatttaagacacttagattaggtataacaattggcacttcattgaaaccatgaggagg 4833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 305
Target Start/End: Complemental strand, 15961313 - 15961083
Alignment:
Q  76 tatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaa-atgagtttatttgaaa 174  Q
    |||||||||||||  |||| ||  ||||| ||| ||||||||||| |||||| ||||||||| |||||||  |||||| || | ||| |||| ||||||     
T  15961313 tatttgaagattataataattaactttaaagaattgagtccaagattcttcagctccaaatttcttcattttccatataaccatatgtgtttgtttgaag 15961214  T
Q  175 tcatgagaaaaacagagacaatcctttaacacgcttagatttggggcaacaattggcacttcaatgaaaccctgaggaggagacaaacgagtatgtatct 274  Q
    |||||||||||||| |||||||  |||||||| |||||||||||   ||||  ||| |||||| ||||||| | |||||| | |||  |||||||| |||    
T  15961213 tcatgagaaaaacaaagacaattatttaacacacttagatttggtttaacatatggaacttcattgaaacctttaggaggtgccaactgagtatgtgtct 15961114  T
Q  275 tagtgtccaaatgaagtgaaataatctcaaa 305  Q
     |||| |||||| |||||||| |||| ||||    
T  15961113 cagtgcccaaatcaagtgaaacaatcacaaa 15961083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 39379049 - 39379114
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    |||||||| | |||||||  ||||||| || |||||||||||||||||||| ||||||||||||||    
T  39379049 ttgaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcat 39379114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 4571013 - 4570929
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa 159  Q
    ||||| |||||| || ||||||| ||||||| || ||||||||||| |||||||| ||||||| |||||||  |||||| |||||    
T  4571013 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 4570929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 21855367 - 21855436
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||| |||||||| | ||||||  ||||||||  ||||||||||| |||||||| ||||||||||||||    
T  21855367 ctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcat 21855436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 4014949 - 4015018
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||| |||||| | | ||||||  ||||||||| ||||||||||| |||||||| ||||||| ||||||    
T  4014949 ctattagaagatcatggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcat 4015018  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 10219073 - 10219001
Alignment:
Q  73 acctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    ||||||| ||||| || | |||||| ||||||| || ||||||||||| |||||||  ||||||| |||||||    
T  10219073 acctattcgaagagtatggtaactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatt 10219001  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 20770736 - 20770612
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaa 173  Q
    |||||||||||||| |||||||| |||||||||| ||| |||| |||||||||| ||||||||||||||||  |||||| || |||| ||||| ||| |     
T  20770736 ctatttgaagattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaac 20770637  T
Q  174 atcatgagaaaaacagagacaatcc 198  Q
    ||||||||||||||| | |||||||    
T  20770636 atcatgagaaaaacaaatacaatcc 20770612  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 17369750 - 17369680
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||||||  |||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  17369750 ctatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatt 17369680  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 6947880 - 6947988
Alignment:
Q  91 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa-tgagtttatttgaaatcatgagaaaaacag 189  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  ||| |  ||||| || ||||  ||||||||||| ||||||||     
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaa 6947979  T
Q  190 agacaatcc 198  Q
    || ||||||    
T  6947980 aggcaatcc 6947988  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 6921350 - 6921404
Alignment:
Q  91 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6921350 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatt 6921404  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 6954521 - 6954627
Alignment:
Q  93 aactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatcatgagaaaaacagag 191  Q
    ||||| ||||||  || ||||||||||| ||||||||||||||||||||||||  ||| || || ||||| ||||  |||||||||| ||| ||||||||    
T  6954521 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 6954620  T
Q  192 acaatcc 198  Q
     ||||||    
T  6954621 gcaatcc 6954627  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 6935218 - 6935326
Alignment:
Q  91 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattaca-aatgagtttatttgaaatcatgagaaaaacag 189  Q
    ||||||| |||||||||| | ||||||||| |||| |||||||||||||||||||  ||| || ||| |||| ||||  || ||||||| ||||||| ||    
T  6935218 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgggttttcttaaaatcataagaaaaatag 6935317  T
Q  190 agacaatcc 198  Q
    || ||||||    
T  6935318 aggcaatcc 6935326  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 33576224 - 33576171
Alignment:
Q  107 aactgagtccaagactcttcaactccaaattccttcattaaccatattacaaat 160  Q
    ||||||||||||||||||| ||||||||| |||||||| | |||||| ||||||    
T  33576224 aactgagtccaagactcttgaactccaaactccttcatcatccatataacaaat 33576171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 5979081 - 5978989
Alignment:
Q  107 aactgagtccaagactcttcaactccaaattccttcattaaccatattacaaatgagtttat-ttgaaatcatgagaaaaacagagacaatcc 198  Q
    |||||||||||||||||||  |||||||| |||||||| | |||||| ||||||  | || | ||||||||||| ||||| || |||||||||    
T  5979081 aactgagtccaagactcttggactccaaactccttcatcagccatataacaaattcggttctcttgaaatcatgcgaaaagcaaagacaatcc 5978989  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 6942975 - 6943021
Alignment:
Q  99 ttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||| || ||| |||| ||||||||||||||||||||||||    
T  6942975 ttttaaggaattgcgtctaagattcttcaactccaaattccttcatt 6943021  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 14749459 - 14749414
Alignment:
Q  99 ttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  14749459 ttttgaggaattgagtccaagactcttgaactccaaattccatcat 14749414  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 14514986 - 14514872
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaa-atgagtttatttgaa 173  Q
    |||||||||||||   ||||||| |||||||||| ||||||||||| ||||||||||||||||| | ||||  |||||| |||| ||| ||||  |||||    
T  14514986 ctatttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaa 14514887  T
Q  174 atcatgagaaaaaca 188  Q
    ||||| |||||||||    
T  14514886 atcataagaaaaaca 14514872  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 18908798 - 18908862
Alignment:
Q  80 tgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||||  || ||||| |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  18908798 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcat 18908862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 18913546 - 18913610
Alignment:
Q  80 tgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||||  || ||||| |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  18913546 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcat 18913610  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 18920754 - 18920818
Alignment:
Q  80 tgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||||  || ||||| |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  18920754 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcat 18920818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 20980665 - 20980606
Alignment:
Q  100 tttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa 159  Q
    ||||||||||| |||||||||||||||||||| ||||||  |||||  |||||| |||||    
T  20980665 tttaaggaacttagtccaagactcttcaactctaaattctgtcattttccatataacaaa 20980606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 25377146 - 25377076
Alignment:
Q  89 cgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa 159  Q
    ||||||||| ||||||  || ||| |||||||||||| ||||||||| |||||||| | |||||| |||||    
T  25377146 cgataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaa 25377076  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 18964814 - 18964884
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||||||  |||||| | ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  18964814 ctatttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatt 18964884  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 29597554 - 29597650
Alignment:
Q  93 aactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatcatgagaaaaaca 188  Q
    ||||| |||||||||| ||||||||||| | |||||||||||||||  |||||  |||||| || ||||||||||  |||||||  |||||||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaatggtgagaaaaaca 29597650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 24330883 - 24330952
Alignment:
Q  75 ctatttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||| |||||||| | ||||||  ||||||||  ||||||||||| |||||||| ||||||||||||||    
T  24330883 ctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcat 24330952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 23086836 - 23086799
Alignment:
Q  107 aactgagtccaagactcttcaactccaaattccttcat 144  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  23086836 aactgagtccaagactcttgaactccaaactccttcat 23086799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 27618573 - 27618457
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttatttgaaatca 177  Q
    |||||||||  ||||||||  |||||| |||||||||||||||||||||||||| | ||| | ||||  |||||| || ||||||||||  || ||||||    
T  27618573 ttgaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatca 27618474  T
Q  178 tgagaaaaacagagaca 194  Q
    ||| ||||||| |||||    
T  27618473 tgacaaaaacaaagaca 27618457  T

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Target: scaffold0354 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 7545 - 7479
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    ||||||||| ||||| ||| |||||||||| |||  ||||||||| |||||||||||||||||||||    
T  7545 ttgaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatt 7479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 3625816 - 3625750
Alignment:
Q  79 ttgaagattacgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 145  Q
    |||||||||  |||||||| ||||||| || |||||||||||||||||||| ||||||| |||||||    
T  3625816 ttgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatt 3625750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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