View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14445_low_33 (Length: 360)
Name: NF14445_low_33
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 35454610 - 35454286
Alignment:
| Q |
17 |
ataagtaagaaactggacttttccattcttgtctagctgaggttttccagacttatccctgttgaccatatcttttgcattcccatggtcagcagtgact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35454610 |
ataagtaagaaactggacttttccattcttgtctagctgaggttttgcagacttatccctgttgaccatatcttttgcattcccatggtcagcagtgact |
35454511 |
T |
|
| Q |
117 |
agataaattccacccactagctcaattgcatcaagaaaaatctgcaattacatatataaatacacagtattgatgcaattagtagctatttaaccttcac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35454510 |
agataaattccacccactagctcaattgcatcaagaaaaatctgcaattacatatataaatacacagtattgatgcaattagtagctattta-------- |
35454419 |
T |
|
| Q |
217 |
ttttaataggggaacccataaaatgaaagaattggactattttaatcacagcactgcattttaatcactgtcagagaagaaattcacgag---caacaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35454418 |
-------------acccataaaatgaaagaattggactattttaatcacagcactgcattttaatcactgtcagagaagaaattcacgagcaacaacaat |
35454332 |
T |
|
| Q |
314 |
gatagatatcatttaaaagcaaacattatagataatgcagagcgcc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35454331 |
gatagatatcatttaaaagcaaacattatagataatgcagagcgcc |
35454286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 27860543 - 27860708
Alignment:
| Q |
19 |
aagtaagaaactggacttttccattcttgtctagctgaggttttccagacttatccctgttgaccatatcttttgcattcccatggtcagcagtgactag |
118 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||| |||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27860543 |
aagtaagaatctggacttttccatcctt---tagcagaggttttccagccttgtccctcttgaccatatcttctgcattcccatggtcagcagtgactac |
27860639 |
T |
|
| Q |
119 |
ataaattccacccactagctcaattgcatcaagaaaaatctgcaattacatatataaatacacagtatt |
187 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
27860640 |
ataaattccacccacttgctcaattgcgtcaagaatcatctgcaattacatttataaatacacagtatt |
27860708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 27861325 - 27861365
Alignment:
| Q |
320 |
tatcatttaaaagcaaacattatagataatgcagagcgccc |
360 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
27861325 |
tatcatttaaaagcaatcattttagataatgcaaagcgccc |
27861365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University