View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_38 (Length: 324)
Name: NF14445_low_38
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 52760850 - 52761154
Alignment:
| Q |
18 |
aaaggatctagaacatgatgttcaaccacagcctgcttcagaaaaacatttcctctagtagcacgaaatagaattctttcgaaaggaattgatttttccc |
117 |
Q |
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| T |
52760850 |
aaaggatctagaacatgatgttcaaccacagcctgcttcagaaaaacatttcctctagtagcacgaaatagaattctttcaaaaggaattgatttttccc |
52760949 |
T |
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| Q |
118 |
tagtaacaagaccggttataaaccccaattttatctgctttactggatatgctgtcgtctcctacaagtcataaaatttctaagcatcatcaacaaatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52760950 |
tagtaacaagaccggttataaaccccaattttatctgctttactggatatgctgtcgtctcctacaagtcataaaatttctaagcatcatcaataaatga |
52761049 |
T |
|
| Q |
218 |
cattatgaatataaactacaaagttgtagggtatacttgttccattaataatggacagtcaatagacccttcaacagatggttgttgaacttcaagctct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761050 |
cattatgaatataaactacaaagttgtagggtatacttgttccattaataatggacagtcaatagacccttcaacagatggttgttgaacttcaagctct |
52761149 |
T |
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| Q |
318 |
ctctg |
322 |
Q |
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||||| |
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| T |
52761150 |
ctctg |
52761154 |
T |
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