View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_4 (Length: 825)

Name: NF14445_low_4
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_4
NF14445_low_4
[»] chr3 (6 HSPs)
chr3 (21-752)||(29199044-29199775)
chr3 (494-646)||(19768803-19768956)
chr3 (21-144)||(19768134-19768260)
chr3 (742-808)||(29203964-29204030)
chr3 (21-126)||(12572353-12572461)
chr3 (21-126)||(13548817-13548925)
[»] chr5 (1 HSPs)
chr5 (21-480)||(4351267-4351747)
[»] chr4 (3 HSPs)
chr4 (306-553)||(25900977-25901225)
chr4 (78-144)||(37617082-37617148)
chr4 (530-572)||(50227374-50227416)
[»] scaffold0352 (1 HSPs)
scaffold0352 (132-480)||(15387-15751)
[»] chr6 (1 HSPs)
chr6 (21-144)||(22082827-22082953)
[»] chr1 (1 HSPs)
chr1 (79-222)||(51389747-51389888)


Alignment Details
Target: chr3 (Bit Score: 675; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 21 - 752
Target Start/End: Complemental strand, 29199775 - 29199044
Alignment:
Q  21 atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnncttacataaacaaaacacataatgcagcataacacacaccgac 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  29199775 atggctaaacagaaacatcgaaagcaggcctgaatttgaagtagcagaggaaaaaaacttacataaacaaaacacataatgcagcataacacacaccgac 29199676  T
Q  121 agccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199675 agccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaa 29199576  T
Q  221 gaaagagaacataaaagtgatatcaatatctcatagttggtgtgatcaagaatttttcacagtagcaataaaatgcttaaaaagaaaaaccaagagatgg 320  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199575 gaaagaggacataaaagtgatatcaataactcatagttggtgtgatcaagaatttttcacagtagcaataaaatgcttaaaaagaaaaaccaagagatgg 29199476  T
Q  321 ttttacaactatagttggtcacacaaacagaaacaaataaaatgcttaaaaattaaaattgacttattttcacatagcaattcaagaatatgttgctaca 420  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199475 ttttacaactatagttggtcacacacacagaaacaaataaaatgcttaaaaattaaaattgacttattttcacatagcaattcaagaatatgttgctaca 29199376  T
Q  421 gtcgctgtgaacaatttcaatatagataaatctcaagagaaaaaataggaataagagaacatgacgatccaactgttctagtttcttctatagcaaaata 520  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199375 gtcgctgtgaacaatttcaatatagataaatctaaagagaaaaaatatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaata 29199276  T
Q  521 gatgagaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttct 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199275 gatgagaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttct 29199176  T
Q  621 ccttctcattttgcagatgatttaagagctctgagtggcattttcacttccaaattatcaaacattgaatccaaccaaacacatagaaattactctataa 720  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199175 ccttctcattttgcacatgatttaagagctttgagtggcattttcacttccaaattatcaaacattgaatccaaccaaacacatagaaattactctataa 29199076  T
Q  721 ctataactttttgaagcaataacattcaaaaa 752  Q
    ||||||||||||||||||||||||| ||||||    
T  29199075 ctataactttttgaagcaataacatccaaaaa 29199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 494 - 646
Target Start/End: Complemental strand, 19768956 - 19768803
Alignment:
Q  494 tgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaa-at 592  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||  |    
T  19768956 tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct 19768857  T
Q  593 tcaaacaaaatcagcttctcaaatttctccttctcattttgcagatgatttaag 646  Q
      ||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  19768856 aaaaaaaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaag 19768803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 19768260 - 19768134
Alignment:
Q  21 atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc 117  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||   |||       ||||||||||||||||||||||||||| |||||||||||     
T  19768260 atggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcagaggaaaaaaacttacataaacaaaacacataatgcagtataacacacact 19768161  T
Q  118 gacagccacgaagaaaaagctccctca 144  Q
    |||||||||||||||||||||||||||    
T  19768160 gacagccacgaagaaaaagctccctca 19768134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 742 - 808
Target Start/End: Complemental strand, 29204030 - 29203964
Alignment:
Q  742 acattcaaaaaatagtattcgccatgttccccactcttgtaccaatcttcgtattgaaccaaattaa 808  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  29204030 acattcaaaaactagtattcgccatgttccccactcttgtaccaaacttcgtattgaatcaaattaa 29203964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 12572353 - 12572461
Alignment:
Q  21 atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc 117  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||||   |||       ||||||||||||||||||| ||||| || ||||||||||     
T  12572353 atggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacact 12572452  T
Q  118 gacagccac 126  Q
    ||| |||||    
T  12572453 gactgccac 12572461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 13548817 - 13548925
Alignment:
Q  21 atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc 117  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||||   |||       ||||||||||||||||||| ||||| || ||||||||||     
T  13548817 atggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacact 13548916  T
Q  118 gacagccac 126  Q
    ||| |||||    
T  13548917 gactgccac 13548925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 21 - 480
Target Start/End: Complemental strand, 4351747 - 4351267
Alignment:
Q  21 atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc 117  Q
    ||||||||| ||||| |||||| |||||||| |||||||||||||||   |||       ||||||||||||||||| | ||||| || ||||||||||     
T  4351747 atggctaaaaagaaaaatcgaaggcagacctaaatttgaagtagcagcgcaggaacaaaacttacataaacaaaacaaacaatgccgcgtaacacacact 4351648  T
Q  118 gacagccacgaagaaaaa-gctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgat 216  Q
    ||| |||||||| ||||| |||||||||||||||||| |||||||||||| || ||||| || |||||||||| ||||||||||||| ||||||||||||    
T  4351647 gactgccacgaaaaaaaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattgaatgctt-gtaaacttccaatgcactgaaatgat 4351549  T
Q  217 ttaagaaagagaacataaaagtgatatcaatatctca-tag------------------ttggtgtgatcaagaatttttcacagtagcaataaaatgct 297  Q
    | ||||||||| |||||||| ||||||||||| |||| |||                  |||||||||| || ||  || ||||||||||||||||||||    
T  4351548 tcaagaaagaggacataaaaatgatatcaataactcaatagctgattttacaactacacttggtgtgataaaaaaaattccacagtagcaataaaatgct 4351449  T
Q  298 taaaaagaaaaaccaagagatggttttacaactatagttggtcacacaaacagaaacaaataaaatgcttaaaaattaaaattgacttattttcaca-ta 396  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||| ||| ||||| |||||||||||||||||||||||||||||||||||| | ||    
T  4351448 taaaaagaaaaaccaagagatggttttacaactatatttggt--cacatacaaaaacacataaaatgcttaaaaattaaaattgacttattttcatagta 4351351  T
Q  397 gcaattcaagaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctcaagagaaaaaataggaataagagaac 480  Q
    |||||||| ||||  ||| ||| ||| | ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  4351350 gcaattcatgaatgggtttctatagttggtgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagagaac 4351267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 306 - 553
Target Start/End: Original strand, 25900977 - 25901225
Alignment:
Q  306 aaaaccaagagatggttttacaactatagttggtcacacaaacagaaacaaataaaatgcttaaaaattaaaattgacttattttcaca-tagcaattca 404  Q
    |||||||||||||  ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25900977 aaaaccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcacagtagcaattca 25901076  T
Q  405 agaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctcaagagaaaaaataggaataagagaacatgacgatccaactgttctagttt 504  Q
     ||||||||||| |  |||  |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| || ||| || |||||||||    
T  25901077 tgaatatgttgcaatcgtcaatgtgaacaatttcaatgtagataaatctcaagagaaaaagtatgaataagagaacatgaagacccatctattctagttt 25901176  T
Q  505 cttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaaga 553  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25901177 cttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaaga 25901225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 37617082 - 37617148
Alignment:
Q  78 cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca 144  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  37617082 cttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctca 37617148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 572
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
Q  530 gaaacaaataaaagtggaagaagaaactttatccataagaacc 572  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  50227374 gaaacaaataaaagtgaaagaagaaactttacccataagaacc 50227416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 127; Significance: 4e-65; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 132 - 480
Target Start/End: Original strand, 15387 - 15751
Alignment:
Q  132 aaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaagaaagagaaca 231  Q
    |||||||||||||||||||||| |||||||||||| || ||||| || || ||||||| ||||||||||||| ||| ||||||||| ||||||||| |||    
T  15387 aaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattaaatgctt-gtaaacttccaatgcacagaaatgattcaagaaagaggaca 15485  T
Q  232 taaaagtgatatcaatatctca-tag------------------ttggtgtgatcaagaatttttcacagtagcaataaaatgcttaaaaagaaaaacca 312  Q
    ||||||||||||||||| |||| |||                  |||||||||| || |   || ||||||||||||||||||||||||||| |||||||    
T  15486 taaaagtgatatcaataactcaatagatgattttacaactacacttggtgtgattaaaataattccacagtagcaataaaatgcttaaaaaggaaaacca 15585  T
Q  313 agagatggttttacaactatagttggtcacacaaacagaaacaaataaaatgcttaaaaattaaaattgacttattttcaca-tagcaattcaagaatat 411  Q
    ||||||||||||||| ||||| |||||  |||| ||| ||||| ||||||||||||||||||||||||| |||||||||| | |||||||||| ||||      
T  15586 agagatggttttacatctatatttggt--cacatacaaaaacacataaaatgcttaaaaattaaaattggcttattttcatagtagcaattcatgaatgg 15683  T
Q  412 gttgctacagtcgctgtgaacaatttcaatatagataaatctcaagagaaaaaataggaataagagaac 480  Q
    ||| ||| ||| | ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||    
T  15684 gtttctatagttggtgtgaacaatttcaataaagataaatctgaagag-aaaaatatgaataagagaac 15751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 22082953 - 22082827
Alignment:
Q  21 atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnn---cttacataaacaaaacacataatgcagcataacacacacc 117  Q
    ||||| |||||||||||| ||| ||| |||||||||||||||||||| ||          ||||||||||||||||||||||||||| |||||||||||     
T  22082953 atggcaaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagaaaaaaaacttacataaacaaaacacataatgcagtataacacacact 22082854  T
Q  118 gacagccacgaagaaaaagctccctca 144  Q
    |||||||||||||||||||||||||||    
T  22082853 gacagccacgaagaaaaagctccctca 22082827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 51389747 - 51389888
Alignment:
Q  79 ttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaa 178  Q
    ||||||||||||| |||| || ||||||||||| ||||||| |||||| |||||| || |||||||||||||||| ||  ||| ||||||| ||||| ||    
T  51389747 ttacataaacaaaccacacaacgcagcataacatacaccgatagccacaaagaaatag-tccctcacaaacgattcaaagtcttacaaagcccatccgaa 51389845  T
Q  179 tttgaatgctttgtaaacttccaatacactgaaatgatttaaga 222  Q
    || |||||| | ||||| ||||||| ||||||||||||| ||||    
T  51389846 ttcgaatgc-tagtaaatttccaatgcactgaaatgattcaaga 51389888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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