View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_40 (Length: 320)

Name: NF14445_low_40
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_40
NF14445_low_40
[»] chr7 (16 HSPs)
chr7 (1-308)||(31158676-31158983)
chr7 (1-308)||(10346706-10347013)
chr7 (1-308)||(23794548-23794855)
chr7 (1-308)||(12183320-12183627)
chr7 (1-308)||(2630875-2631161)
chr7 (1-290)||(22322323-22322591)
chr7 (1-224)||(7143112-7143315)
chr7 (1-180)||(19472790-19472967)
chr7 (1-180)||(22817893-22818070)
chr7 (1-180)||(31878076-31878255)
chr7 (3-138)||(45501201-45501336)
chr7 (1-145)||(2798104-2798248)
chr7 (130-308)||(22322200-22322379)
chr7 (3-99)||(2477137-2477233)
chr7 (130-179)||(2797986-2798035)
chr7 (42-99)||(24169334-24169391)
[»] chr6 (12 HSPs)
chr6 (1-308)||(3538502-3538809)
chr6 (1-303)||(34005959-34006261)
chr6 (1-290)||(26510920-26511208)
chr6 (1-290)||(26516036-26516324)
chr6 (1-300)||(24161653-24161933)
chr6 (123-303)||(26510697-26510878)
chr6 (123-303)||(26515813-26515994)
chr6 (1-125)||(9934570-9934692)
chr6 (130-290)||(26510815-26510976)
chr6 (130-290)||(26515931-26516092)
chr6 (1-124)||(15641779-15641899)
chr6 (35-96)||(26603713-26603774)
[»] chr5 (16 HSPs)
chr5 (1-308)||(11766210-11766517)
chr5 (1-308)||(14343946-14344253)
chr5 (1-308)||(11723676-11723983)
chr5 (1-290)||(30607600-30607888)
chr5 (1-308)||(7314439-7314726)
chr5 (1-290)||(34455648-34455956)
chr5 (1-269)||(9403774-9404021)
chr5 (1-180)||(24835213-24835390)
chr5 (1-180)||(33434061-33434238)
chr5 (1-145)||(6269370-6269515)
chr5 (130-308)||(34455900-34456079)
chr5 (130-303)||(9404006-9404180)
chr5 (130-308)||(30607477-30607656)
chr5 (253-308)||(6269595-6269650)
chr5 (33-99)||(30422275-30422341)
chr5 (1-98)||(34870280-34870376)
[»] scaffold1494 (1 HSPs)
scaffold1494 (1-308)||(1019-1326)
[»] chr8 (13 HSPs)
chr8 (1-308)||(28926544-28926851)
chr8 (1-308)||(3298256-3298563)
chr8 (9-301)||(9068574-9068866)
chr8 (1-308)||(27347501-27347808)
chr8 (1-265)||(22179964-22180227)
chr8 (1-308)||(27353581-27353868)
chr8 (1-290)||(8743807-8744075)
chr8 (190-309)||(22180256-22180375)
chr8 (64-247)||(28369650-28369813)
chr8 (40-145)||(36737426-36737529)
chr8 (127-308)||(8743684-8743866)
chr8 (254-308)||(28369800-28369854)
chr8 (123-179)||(22180293-22180349)
[»] chr4 (15 HSPs)
chr4 (1-308)||(4839537-4839844)
chr4 (1-290)||(5274055-5274343)
chr4 (1-218)||(42533436-42533653)
chr4 (1-277)||(46692571-46692846)
chr4 (1-288)||(55326228-55326515)
chr4 (185-308)||(22047319-22047442)
chr4 (1-180)||(44432556-44432733)
chr4 (1-116)||(22047201-22047316)
chr4 (130-308)||(5273932-5274111)
chr4 (131-287)||(46692457-46692613)
chr4 (130-179)||(42533299-42533348)
chr4 (130-180)||(42533392-42533442)
chr4 (1-98)||(19248394-19248490)
chr4 (34-98)||(26069167-26069231)
chr4 (231-308)||(42533368-42533445)
[»] chr3 (15 HSPs)
chr3 (1-308)||(3587854-3588161)
chr3 (1-308)||(7653621-7653927)
chr3 (1-278)||(27031218-27031494)
chr3 (1-308)||(8614978-8615265)
chr3 (1-308)||(4755259-4755565)
chr3 (1-145)||(52045446-52045590)
chr3 (1-180)||(52308523-52308700)
chr3 (9-267)||(36469873-36470128)
chr3 (130-308)||(27031083-27031262)
chr3 (65-180)||(10386597-10386710)
chr3 (1-69)||(10407589-10407657)
chr3 (150-249)||(52045362-52045461)
chr3 (254-308)||(52045323-52045377)
chr3 (40-115)||(11260392-11260468)
chr3 (35-98)||(33247396-33247458)
[»] chr1 (10 HSPs)
chr1 (1-308)||(33492595-33492902)
chr1 (1-247)||(12168637-12168883)
chr1 (1-283)||(38122463-38122744)
chr1 (1-308)||(16833150-16833457)
chr1 (1-308)||(13218435-13218742)
chr1 (130-308)||(38122333-38122512)
chr1 (254-308)||(12168596-12168650)
chr1 (1-99)||(13829659-13829756)
chr1 (1-99)||(39453411-39453508)
chr1 (130-175)||(21717856-21717901)
[»] scaffold0015 (2 HSPs)
scaffold0015 (1-242)||(185257-185498)
scaffold0015 (1-126)||(174099-174224)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-166)||(354282-354447)
[»] chr2 (7 HSPs)
chr2 (1-184)||(8683964-8684148)
chr2 (1-180)||(32522440-32522619)
chr2 (1-180)||(29223168-29223345)
chr2 (1-180)||(29336467-29336644)
chr2 (231-308)||(8688062-8688139)
chr2 (1-98)||(36668450-36668546)
chr2 (130-175)||(270798-270843)
[»] scaffold0014 (2 HSPs)
scaffold0014 (40-223)||(79744-79927)
scaffold0014 (254-299)||(76836-76881)
[»] scaffold0059 (1 HSPs)
scaffold0059 (40-224)||(16960-17141)
[»] scaffold0019 (3 HSPs)
scaffold0019 (1-145)||(117194-117338)
scaffold0019 (150-283)||(117076-117209)
scaffold0019 (130-308)||(116947-117125)
[»] scaffold0744 (1 HSPs)
scaffold0744 (35-142)||(1945-2050)
[»] scaffold0458 (1 HSPs)
scaffold0458 (1-99)||(10166-10263)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 31158983 - 31158676
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31158983 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 31158884  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31158883 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaa 31158784  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31158783 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgaaccatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 31158684  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  31158683 acatgttc 31158676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 10347013 - 10346706
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  10347013 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 10346914  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10346913 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 10346814  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10346813 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 10346714  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  10346713 acatgttc 10346706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 23794548 - 23794855
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  23794548 agttatctaaggaaaagctaccatttgagtgcaattttaccatttattctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 23794647  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||    
T  23794648 aaaagaaggaagctcctgaaccaaggttcgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttatgttcgcttacaa 23794747  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23794748 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 23794847  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  23794848 acatgttc 23794855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12183320 - 12183627
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | |||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||     
T  12183320 agttatctaaggaaaagctaccatttgagtgtatttttaccatttatgcttcacatgcctgattctacccaatttatgcaggaaacgacaagcaaggacc 12183419  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| |||| |||||||||||||  ||||||||||| |     
T  12183420 aaaagaaggaagctcctgaaccaaggtcagttcgcttaagcgaacccctgttcgcttaagtgaacaagttccagagagcaaccagcctgttcgcttaaag 12183519  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    |||||| | ||||||||||||||   | | |||||||||||| | || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  12183520 gcacgccttcagttcgctcatgagaaaagttcagttcgcttaagtgacctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctc 12183619  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  12183620 acaagttc 12183627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 2630875 - 2631161
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||     
T  2630875 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgcttt-catgcctgattctacccaatttatgcaggaaatgacaagaaaggacc 2630973  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||||||||                    |||||||||||||| ||||||||||||||| || |||||||||||||    
T  2630974 aaaagaaggaagctcctgaaccaaggtccgttc--------------------gcttaagcgaaccaattacagagagcaaccgttttgttcgcttacaa 2631053  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2631054 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 2631153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 22322591 - 22322323
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||     
T  22322591 agttatctaaggaaaagctaccatttgagtgtaattttaccatttatgctttacatacctaattctacccaatttatgcaggaaatgacaagcaaggacc 22322492  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||| ||||||||||||                    |||||||||||||||||||||| ||||||||||||||||    
T  22322491 aaaagaaggaagctcctgaaccaaggtctgttcgcttaagc--------------------gaaccagttacagagagcaaccgttctgttcgcttacaa 22322412  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    |||||| | ||||||||||||| |  | | |||||||||||| |||| ||||||||||||||||||| | |||||||| || ||||||||    
T  22322411 gcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagaactccagga 22322323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7143112 - 7143315
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  7143112 agttatctaaggaaaagctaccatttgagtgtaatattaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 7143211  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  7143212 aaaagaaggaagctcctgaaccaaggtc--------------------tgttcgcttaagcgaaccagttacagagagcaaccgttctattcgcttacaa 7143291  T
Q  201 gcacgcttccagttcgctcatgaa 224  Q
    |||||| | |||||||||||||||    
T  7143292 gcacgccttcagttcgctcatgaa 7143315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 19472967 - 19472790
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||  ||||||| | |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||     
T  19472967 agttatctaaggaaaagctaccttttgagtgtatttttaccatttatgctttacatgcctaattctacccaatttatgcaggaaacgacaagcaaggac- 19472869  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| ||| |||||||||||||    | |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  19472868 -caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaaccagttccagagagca 19472790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 22817893 - 22818070
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  22817893 agttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggac- 22817991  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| ||| ||| |||||||||    | |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  22817992 -caagaaagaacctcttgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaaccagttccagagagca 22818070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 31878076 - 31878255
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| || |||||||||| || ||||||| | || | ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||     
T  31878076 agttatctagggaaaagctatcatttgagtgtatttataccatttatgctttacatgcctgattctacccaatttatgtaggaaatgacaagcaaggacc 31878175  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
    |||||||||||||| ||||| ||||||| |||| | ||||||  |||||||||||||||||||||  ||| |||||||||    
T  31878176 aaaagaaggaagcttctgaatcaaggtcagttcacgtaagcggcctcctgttcgcttaagcgaacacgttccagagagca 31878255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 45501336 - 45501201
Alignment:
Q  3 ttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaa 102  Q
    |||| ||||||||||||| || ||||||| | || | ||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||    
T  45501336 ttatctaaggaaaagctatcatttgagtgtatttataccatttatgttttacatgcctgattctacccaatttatgcagtaaatgacaagcaaggaccaa 45501237  T
Q  103 aagaaggaagctcctgaaccaaggtccgttcgctta 138  Q
    ||||||||||||| |||||||||||| |||||||||    
T  45501236 aagaaggaagctcatgaaccaaggtctgttcgctta 45501201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 2798248 - 2798104
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| ||||||||| | | || ||||||| | || | ||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||     
T  2798248 agttatctaaggaaaaacaatcatttgagtgtatttataccatttatgctttacatacctgattctatccaatttatgcaggaaatgacaagcaaggacc 2798149  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 145  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||    
T  2798148 aaaagaaggaagctcctgagtcaaggtcagttcgcttaagcgaac 2798104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 22322379 - 22322200
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||| |  |     | ||| ||||| |||||||||||||||| ||||||||| |      
T  22322379 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagaactccaggattcttcacttactagcacgcttccagttccctcatgaagaaaa 22322280  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    | ||| |||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  22322279 ggtcatttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcacacgttc 22322200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 2477137 - 2477233
Alignment:
Q  3 ttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||| |||| ||||||||| | ||||||| | |||| ||||||||| ||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  2477137 ttatctaagaaaaagctactaattgagtgtatttttaccatttatgttttacatgcctgattctacctaatttatgcaggaaatgacaagcaaggac 2477233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 2798035 - 2797986
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagc 179  Q
    |||||||||||||| ||| ||||| |||||| ||||||||| ||||||||    
T  2798035 gttcgcttaagcgacctcatgttcacttaagtgaaccagttccagagagc 2797986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 24169391 - 24169334
Alignment:
Q  42 atttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    ||||||||||||  ||||| ||||||||| |||| |||||||||  ||||||||||||    
T  24169391 atttatgctttaggtgccttattctacccaatttgtgcaggaaagtacaagcaaggac 24169334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 3538502 - 3538809
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3538502 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 3538601  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  3538602 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttagcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaa 3538701  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3538702 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 3538801  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  3538802 acatgttc 3538809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 34005959 - 34006261
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||  ||| |||||||||||||     
T  34005959 agttatctaaggaaatgctaccatttgagtgcaattttaccatttatgctttacatgcctgattctatccaatttatgcataaaatgacaagcaaggacc 34006058  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  34006059 aaaagaaggaagctcctgaaccaatgtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 34006158  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | ||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34006159 gcacgcttccagttcgctcatgaagaaaggtcatttcgcttaagcgacctatggttcgcttaagcgaacaagttccagtgagctccaggaaagttcgctc 34006258  T
Q  301 aca 303  Q
    |||    
T  34006259 aca 34006261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 26511208 - 26510920
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  26511208 agttatctaaggaaaagctaccatttgagtataattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 26511109  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  26511108 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaacccctgttcgcttaagcgaaccagttacagagagcaactgttctgttcgcttacaa 26511009  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    |||||| | ||||||||||||| |  | | |||||||||||| |||| |||||||||||||||| || | |||||||| |||| ||||||    
T  26511008 gcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcgacctatggttcgcttaagtgaaccagttccagagagcaccagga 26510920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 26516324 - 26516036
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  26516324 agttatctaaggaaaagctaccatttgagtataattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 26516225  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  26516224 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaacccctgttcgcttaagcgaaccagttacagagagcaactgttctgttcgcttacaa 26516125  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    |||||| | ||||||||||||| |  | | |||||||||||| |||| |||||||||||||||| || | |||||||| |||| ||||||    
T  26516124 gcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcgacctatggttcgcttaagtgaaccagttccagagagcaccagga 26516036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 24161933 - 24161653
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaattttt-ccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||||| |||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||    
T  24161933 agttatataaggaaaagctaccatttgagtgtattttttaccatttatgctttacatgcctgattctatccaatttatgtaggaaatgacaagcaaggac 24161834  T
Q  100 gaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttaca 199  Q
     |||||||||||||||||||||||||||| ||||||||||||                    |||| |||| |||||||||||||   ||||||||||||    
T  24161833 caaaagaaggaagctcctgaaccaaggtcagttcgcttaagc--------------------gaacaagttccagagagcaaccagcatgttcgcttaca 24161754  T
Q  200 agcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgct 299  Q
    ||||||| | ||||||||||||||   | | ||| |||||||| |||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  24161753 agcacgccttcagttcgctcatgagaaaagttcaattcgcttaagcgacctatggttcgcttaagcgaacaagttctagagagctccaggaaagttcgct 24161654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 303
Target Start/End: Complemental strand, 26510878 - 26510697
Alignment:
Q  123 aaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatg 222  Q
    |||||| |||||||||||||| ||   |||| ||||||||||| ||||  |||||||| |     | ||||||||| ||||||||||||||| |||||||    
T  26510878 aaggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccaggattcttcgcttactagcacgcttccagtttgctcatg 26510779  T
Q  223 aagtac-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcaca 303  Q
    ||| |  | |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26510778 aagaaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcaca 26510697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 303
Target Start/End: Complemental strand, 26515994 - 26515813
Alignment:
Q  123 aaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatg 222  Q
    |||||| |||||||||||||| ||   |||| ||||||||||| ||||  |||||||| |     | ||||||||| ||||||||||||||| |||||||    
T  26515994 aaggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccaggattcttcgcttactagcacgcttccagtttgctcatg 26515895  T
Q  223 aagtac-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcaca 303  Q
    ||| |  | |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26515894 aagaaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcaca 26515813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 9934692 - 9934570
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| ||||||||| |||||| ||||||| | |||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||     
T  9934692 agttatctaaggaaaaactaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccaatttatgcaggaaacgacaagcaaggac- 9934594  T
Q  101 aaaagaaggaagctcctgaaccaag 125  Q
      ||||| ||| |||||||||||||    
T  9934593 -caagaaagaacctcctgaaccaag 9934570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 26510976 - 26510815
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||   ||||||||||| ||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  26510976 gttcgcttaagcgacctatggttcgcttaagtgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 26510877  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    | |||||||||||| |||| ||||||||| ||||||||| ||||||| || |||| ||||||    
T  26510876 ggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccagga 26510815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 26516092 - 26515931
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||   ||||||||||| ||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  26516092 gttcgcttaagcgacctatggttcgcttaagtgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 26515993  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    | |||||||||||| |||| ||||||||| ||||||||| ||||||| || |||| ||||||    
T  26515992 ggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccagga 26515931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 15641779 - 15641899
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||  || | |||| |||||||||||||||||||||||||| | ||| ||||||| ||||| ||||||||||||      
T  15641779 agttatctaaggaaaagctaccaattgt-tgtacttttaccatttatgctttacatgcctgattccaacccttttatgctggaaatgacaagcaagga-- 15641875  T
Q  101 aaaagaaggaagctcctgaaccaa 124  Q
    | ||||| ||||||| ||||||||    
T  15641876 acaagaaagaagctcatgaaccaa 15641899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 26603713 - 26603774
Alignment:
Q  35 tttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaag 96  Q
    |||| ||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||    
T  26603713 ttttaccatttatgctttacatgcctgattctactcaatttgtgcaggaaatgacaagcaag 26603774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 11766210 - 11766517
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11766210 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgtctgattctaccccatttatgcaggaaacgacaagcaaggacg 11766309  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11766310 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaa 11766409  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11766410 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 11766509  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  11766510 acatgttc 11766517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 14343946 - 14344253
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  14343946 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 14344045  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  14344046 aaaagaaggaagctcctgaaccaaggttcgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 14344145  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14344146 gcacgcttccagttcgctcatgaagaaaggtcagttcccttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 14344245  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  14344246 acatgttc 14344253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 11723983 - 11723676
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||     
T  11723983 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaatgacc 11723884  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||     
T  11723883 aaaagaaggaagctcatgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttttgttcgcttacag 11723784  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11723783 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 11723684  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  11723683 acatgttc 11723676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 30607888 - 30607600
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  30607888 agttatctaaggaaaagctaccatttgagtgtaatattaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 30607789  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  30607788 aaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaacccctgttcgcttaagcgaaccagttacagagagcaaccgttctattcgcttacaa 30607689  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    |||||| | ||||||||||||| |  | | |||||||||||| |||| ||||||||||||||||||| |||||||||| |||| ||||||    
T  30607688 gcacgccttcagttcgctcatg-ataaagctcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagcaccagga 30607600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 7314439 - 7314726
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||     
T  7314439 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctaccaaatttatgcaggaaatgacaagcaaggacc 7314538  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||||||||                    |||||||||||||| ||||||||||||||| ||||||||||||||||    
T  7314539 aaaagaaggaagctcctgaaccaaggtccgttc--------------------gcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 7314618  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||| ||||||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7314619 gcacgcttccagttcactcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 7314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 34455648 - 34455956
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || |||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||     
T  34455648 agttatctaaggaaaagctaccatttgagtgtaatattaccatttatgctttacatgcccgattctacccaatttatgcaggaaatgacaagcaaggacc 34455747  T
Q  101 aaaagaaggaagctcctgaaccaaggt--------------------ccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
    |||||||||||||||||||||||||||                    | |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34455748 aaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaacccctgttcgcttaagcgaacccctgttcgcttaagcgaaccagttacagagagca 34455847  T
Q  181 accattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtg 280  Q
    ||| |||| ||||||||||||||| | | ||||||||||||| |  | | |||||||||||| |||| ||||||||||||||||||| | |||||||| |    
T  34455848 accgttctattcgcttacaagcacaccttcagttcgctcatg-acaaagctcagttcgcttaagcgacctatggttcgcttaagcgaaccagttccagag 34455946  T
Q  281 agctccagga 290  Q
    ||| ||||||    
T  34455947 agcaccagga 34455956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9403774 - 9404021
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  9403774 agttatctaaggaaaagctaccatttgagtgtaatattactatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 9403873  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||| |||||||||||                    ||||||||||||||||||||||| |||| |||||||||||    
T  9403874 aaaagaaggaagctcctgaaccaaggtctgttcgcttaag--------------------cgaaccagttacagagagcaaccgttctattcgcttacaa 9403953  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgacc 269  Q
    |||||| | ||||||||||| | |  | | || ||||||||| |||| |||||||||||||||||||||    
T  9403954 gcacgccttcagttcgctca-ggacaaagctccgttcgcttaagcgacctatggttcgcttaagcgacc 9404021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 24835213 - 24835390
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||     
T  24835213 agttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaagac- 24835311  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| ||| |||||||||||||    | |||||||||||| |||||||||||||||||||| ||| | |||||||||    
T  24835312 -caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaagcagctccagagagca 24835390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 33434061 - 33434238
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||| ||||| ||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  33434061 agttatctaaggaaaagttaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaggac- 33434159  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| ||| |||||||||||||    | |||||||||||| ||| |||||||||||||| ||||| | |||||||||    
T  33434160 -caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctcttgttcgcttaagcggaccagatccagagagca 33434238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 6269370 - 6269515
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaattttt-ccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||||| ||||||||| |||||| ||||||| | ||||| |||||||||||||||||| |||||||||||| |||||| ||| ||| |||||||||||||    
T  6269370 agttatctaaggaaaatctaccatttgagtgtattttttaccatttatgctttacatgtctgattctacccaatttatacagaaaatgacaagcaaggac 6269469  T
Q  100 gaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 145  Q
     ||||||||||||||| ||||||||||||  |||||||||||||||    
T  6269470 caaaagaaggaagctcttgaaccaaggtcacttcgcttaagcgaac 6269515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 308
Target Start/End: Original strand, 34455900 - 34456079
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  34455900 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggatttttcgcttactagcacgcttccagttcgctcatgaagaaaa 34455999  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | | || ||| |||||||||||||||||||||||| ||||    
T  34456000 ggtcatttcgcttaagcgacctacggttcgcttaagcgaaccacttacagagagctccaggaaagttcgctcacacgttc 34456079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 130 - 303
Target Start/End: Original strand, 9404006 - 9404180
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||| ||||||||||||||||||| |      
T  9404006 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggattcttcgcttactagcacgtttccagttcgctcatgaagaaaa 9404105  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcaca 303  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| ||||||||||||||||||||||||    
T  9404106 ggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcaca 9404180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 30607656 - 30607477
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||   |||||||||||||||| |||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  30607656 gttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 30607557  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| |||||||| ||||||||||||||| ||||    
T  30607556 ggtcatttcgcttaagcgacctacggttcgcttaagcgaactagttacagagagctccaagaaagttcgctcacacgttc 30607477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 6269595 - 6269650
Alignment:
Q  253 ggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    ||||||||||||||| ||||||| || ||||||||| |||||||||||||| ||||    
T  6269595 ggttcgcttaagcgaacaagttcgagagagctccagtaaagttcgctcacaagttc 6269650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 30422275 - 30422341
Alignment:
Q  33 aatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||||| |||||||||||||||||| || | ||||| | |||| ||||||||| |||||||||||||    
T  30422275 aattttgccatttatgctttacatgtcttactctactcaatttgtgcaggaaatgacaagcaaggac 30422341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34870376 - 34870280
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaagga 98  Q
    |||||| ||||||||| ||| || |||  |||| |||| |||||||||||||||||| |||||| | ||| ||||||||||||||  |||||| ||||    
T  34870376 agttatctaaggaaaaactatcaattgt-tgcatttttaccatttatgctttacatgtctgattttgcccaatttatgcaggaaaatacaagccagga 34870280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 1019 - 1326
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  1019 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 1118  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  1119 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 1218  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  1219 gcacgcttccagttcgctcatgaagaaagatcagttcgcttaagcgacctacgattcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 1318  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  1319 acatgttc 1326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 28926851 - 28926544
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  28926851 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 28926752  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  28926751 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 28926652  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||  | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926651 gcacgcttccagttcgctcatgaacaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 28926552  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  28926551 acatgttc 28926544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 3298256 - 3298563
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||  | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3298256 agttatctaaggaaaagctaccatttgagtttatttttaccatttatgctttacatgtctgattctaccccatttatgcaggaaacgacaagcaaggacg 3298355  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3298356 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactactgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaa 3298455  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3298456 gcacgcttccagttcgctcatgaagaaaggtcatttcgcttaagcgaactatggttcgcttaagcgaccaagttccagtgagctccagaaaagttcgctc 3298555  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  3298556 acatgttc 3298563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 9068866 - 9068574
Alignment:
Q  9 aaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaag 108  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||    
T  9068866 aaggaaaagctaccatttgagtgcaactttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagtaaggaccaaaagaag 9068767  T
Q  109 gaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9068766 gaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgctt 9068667  T
Q  209 ccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctca 301  Q
    ||||||||||||||||| | | |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9068666 ccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctacaggaaagttcgctca 9068574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 27347501 - 27347808
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||     
T  27347501 agttatctaaggaaaagctaccatttgagtgtaattttaccatttatgctttacatgcctgattctatccaatttatgcaggaaatgacaagcaaggacc 27347600  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||    
T  27347601 aaaagaaggaagctcttgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaccgaattacagagagcaaccgttctgttcgcttacaa 27347700  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||| ||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27347701 gcatgcttccagttcgctcatgaaggaaggtcagttcgcttaagcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 27347800  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  27347801 acatgttc 27347808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 22179964 - 22180227
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| ||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||     
T  22179964 agttatctaaggaaaatctaccatttgagtgtaattttaccatttatgctttacatgcctgattctactcaatttatgcaggaaatgacaagcaaggacc 22180063  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| | ||||||||||||||||    
T  22180064 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaacccctgttcgcttaagcgaatcagttccagagagcaatcgttctgttcgcttacaa 22180163  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagc 265  Q
    |||||| | ||||||||||||| |  | | |||||||||||| |||| |||||||||||||||||    
T  22180164 gcacgccttcagttcgctcatg-acaaagttcagttcgcttaagcgacctatggttcgcttaagc 22180227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 27353581 - 27353868
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  27353581 agttatctaaggaaaagctatcatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 27353680  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||| |||||||||||||||||                    |||||||| | | | ||||||||||||||| ||||||||||||||||    
T  27353681 aaaagaaggaagctcttgaaccaaggtccgttc--------------------gcttaagcaaccgaattacagagagcaaccgttctgttcgcttacaa 27353760  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||| ||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27353761 gcatgcttccagttcgctcatgaaggaaggtcagttcgcttaagcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 27353860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 8744075 - 8743807
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| ||   ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  8744075 agttatctaaggaaaagctaccatttgagtgtaatattattatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 8743976  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||                    |||||||||||||||||||||| |||| |||||||||||    
T  8743975 aaaagaaggaagctcttgaaccaaggtctgttcgcttaagc--------------------gaaccagttacagagagcaaccgttctattcgcttacaa 8743896  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    |||||| | ||||||||||| | |  | | || ||||||||| |||| ||||||||||||||||||| | |||||||| |||| ||||||    
T  8743895 gcacgccttcagttcgctca-ggacaaagctccgttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccagga 8743807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 22180256 - 22180375
Alignment:
Q  190 ttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagg 289  Q
    ||||||||| |||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||     
T  22180256 ttcgcttaccagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccagc 22180355  T
Q  290 aaagttcgctcacaggttct 309  Q
    |||||||||||||| |||||    
T  22180356 aaagttcgctcacaagttct 22180375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 64 - 247
Target Start/End: Original strand, 28369650 - 28369813
Alignment:
Q  64 tctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcga 163  Q
    ||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||                    ||||||||||    
T  28369650 tctacccaatttatgcaggaaatgacacgcaaggaccaaaagaaggaagctcctgaaccaaggtccgttc--------------------gcttaagcga 28369729  T
Q  164 accagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 247  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  28369730 accatttacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 28369813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 36737529 - 36737426
Alignment:
Q  40 ccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaa 139  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||   ||||| |||||||||||||||||||| ||||||||||    
T  36737529 ccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggac--caagaaagaagctcctgaaccaaggtcagttcgcttaa 36737432  T
Q  140 gcgaac 145  Q
    ||||||    
T  36737431 gcgaac 36737426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 308
Target Start/End: Complemental strand, 8743866 - 8743684
Alignment:
Q  127 tccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagt 226  Q
    ||||||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||||||||| |||||||||||||     
T  8743866 tccgttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccatttcgctcatgaaga 8743767  T
Q  227 ac-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    |  | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||| ||||    
T  8743766 aaaggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcacacgttc 8743684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 28369800 - 28369854
Alignment:
Q  254 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28369800 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 28369854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 22180293 - 22180349
Alignment:
Q  123 aaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagc 179  Q
    |||||| |||||||||||||| ||   |||||||||||||||| |||| ||||||||    
T  22180293 aaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagc 22180349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 4839844 - 4839537
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  4839844 agttatctgaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 4839745  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  4839744 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 4839645  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4839644 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 4839545  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  4839544 acatgttc 4839537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 5274343 - 5274055
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||     
T  5274343 agttatctaaggaaaagctaccatttgagtgtaatattaccatttatgctttacatgcctgattctacgcaatttatgcaggaaatgacaagcaaggacc 5274244  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  5274243 aaaagaaggaagctcctgaaccaaggtttgttcgcttaagcgaacccctgttcgcttaagcaaaccagttacagagagcaaccgttctgttcgcttacaa 5274144  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 290  Q
    |||||| | |||||||||||| ||  | | |||||||||||| |||| ||||||||||||||||||| | |||||||| |||| ||||||    
T  5274143 gcacgccttcagttcgctcat-aacaaagctcagttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccagga 5274055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 42533653 - 42533436
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||| ||  ||||||||||||| |||||| ||||||     
T  42533653 agttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccattttatgcaggaaatgacaagtaaggacc 42533554  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||| ||| |||||||| ||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||| | |||||||||||||    
T  42533553 aaaagaaggaagctcatgagccaaggtcagtttgcttaagcgaacccctgttcgcttaagcgaacaagttccagagagcaaccagtttgttcgcttacaa 42533454  T
Q  201 gcacgcttccagttcgct 218  Q
    |||| ||  |||||||||    
T  42533453 gcacactctcagttcgct 42533436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 46692846 - 46692571
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| ||||||||||||| || ||||||| | || | ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||     
T  46692846 agttatctaaggaaaagctatcatttgagtgtatttataccatttatgctttacatgcctgattctacccaatttatgcaggaaatgtcaagcaaggacc 46692747  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||| | |||||  ||||| |||||   |||||||||||||||| |||| |||| |||||||| | |||||||||||||    
T  46692746 aaaagaaggaagctcctgaaccaagttacgttcatttaagtgaactttggttcgcttaagcgaacaagttccagaaagcaaccagtttgttcgcttacaa 46692647  T
Q  201 gcacgcttccagttcgctcat-gaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttcca 277  Q
    |||||| | |||||||||||| |||  | | ||| |||||||| || | |||| |||||||||||||| |||||||||    
T  46692646 gcacgccttcagttcgctcatagaa--aagttcaattcgcttaagcaacctattgttcgcttaagcgaacaagttcca 46692571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 55326228 - 55326515
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| ||||||||| |||||| ||||||| | || | ||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||| |||||     
T  55326228 agttatctaaggaaaaactaccatttgagtgtatttgtaccatttacgctttacatgcctgattctacccaatttatacaggaaatgacaagcgaggacc 55326327  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||| |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||  ||||   |  |||||||| |    
T  55326328 aaaacaaggaagctcctaaaccaaggtcagttcgcttgagcgaactcctgttcgcttaagcgaaccagttccagagag-taccagaatagtcgcttacta 55326426  T
Q  201 gcacgcttccagttcgctcatgaag-tacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccag 288  Q
    |||||||| | ||||||||||||||  | | |||||||||||| |||| ||   |||||||||||||| | ||||||||  ||||||||    
T  55326427 gcacgctttctgttcgctcatgaagaaaagttcagttcgcttaagcgacctcatgttcgcttaagcgatccagttccagaaagctccag 55326515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 22047319 - 22047442
Alignment:
Q  185 ttctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagct 284  Q
    ||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  22047319 ttctgttcgcttacaagcacgcttccagttcgctcttgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagct 22047418  T
Q  285 ccaggaaagttcgctcacaggttc 308  Q
    ||||||||||||||||||| ||||    
T  22047419 ccaggaaagttcgctcacatgttc 22047442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 44432733 - 44432556
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | |||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||     
T  44432733 agttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgtctgattctacccaatttatgcaggatacgacaagcaaggac- 44432635  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| ||| |||||||||||||    | |||||||||||| |||||||||||||||||||||||| | |||||||||    
T  44432634 -caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaaccagctccagagagca 44432556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 22047201 - 22047316
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  22047201 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 22047300  T
Q  101 aaaagaaggaagctcc 116  Q
    ||||||||||||||||    
T  22047301 aaaagaaggaagctcc 22047316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 5274111 - 5273932
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  5274111 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 5274012  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | |||||||| |||||||||||||||||||||||| ||||    
T  5274011 ggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttccagagagctccaggaaagttcgctcacacgttc 5273932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 46692613 - 46692457
Alignment:
Q  131 ttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacga 230  Q
    ||||||||||| | ||  ||||||||||||||||| |||| || |||||||||| ||||||||||||||||||| | | ||||||||||||||   | |     
T  46692613 ttcgcttaagcaacctattgttcgcttaagcgaacaagttccaaagagcaaccagtctgttcgcttacaagcacaccttcagttcgctcatgagaaaagt 46692514  T
Q  231 tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctcca 287  Q
    |||||||| ||| |||| |||| |||||||||||||| |||||||||| ||||||||    
T  46692513 tcagttcgtttaagcgacctattgttcgcttaagcgaacaagttccagagagctcca 46692457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 42533348 - 42533299
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagc 179  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  42533348 gttcgcttaagcgacctcctgttcgcttaagcgaacaagttccagagagc 42533299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 42533442 - 42533392
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
    |||||||||||||| ||  |||||||||||||||||||||| |||||||||    
T  42533442 gttcgcttaagcgacctattgttcgcttaagcgaaccagttccagagagca 42533392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19248490 - 19248394
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaagga 98  Q
    |||||| ||||||||| ||| || |||  |||| |||| ||||||||||||||||||||||||| |  || ||||||||||||||  |||||| ||||    
T  19248490 agttatctaaggaaaatctatcaattgt-tgcatttttaccatttatgctttacatgcctgattttgtccaatttatgcaggaaaatacaagccagga 19248394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 26069167 - 26069231
Alignment:
Q  34 atttttccatttatgctttacatgcctg-attctaccccatttatgcaggaaacgacaagcaagga 98  Q
    ||||| |||||||||||||||||||||| |||||  ||| ||||||||||||| ||||||||||||    
T  26069167 attttaccatttatgctttacatgcctgaattct-tcccttttatgcaggaaatgacaagcaagga 26069231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 42533445 - 42533368
Alignment:
Q  231 tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    |||||||||||| |||| |||| |||||||||||||| | |||||||| |||| |||| |  ||||||||||| ||||    
T  42533445 tcagttcgcttaagcgacctattgttcgcttaagcgaaccagttccagagagcaccagaattgttcgctcacaagttc 42533368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 3587854 - 3588161
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||     
T  3587854 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagtaaggacc 3587953  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  3587954 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 3588053  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3588054 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcacttaagcgaccaagttccagtgagctccaggaaagttcgctc 3588153  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  3588154 acatgttc 3588161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 7653927 - 7653621
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||     
T  7653927 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgcttt-catgcctgattctacccaatttatgcaggaaatgacaagaaaggacc 7653829  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  7653828 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaa 7653729  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653728 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 7653629  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  7653628 acatgttc 7653621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 27031494 - 27031218
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||     
T  27031494 agttatctaaggaaaagctaccatttgagtgtaatattaccatttatgctttacatgcctgattctacccaatttatgcaagaaatgacaagcaaggacc 27031395  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  27031394 aaaagaaggaagctcctgaaccaaggcctgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccgttctattcgcttacaa 27031295  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccag 278  Q
    |||||| | ||||||||||||| |  | | || ||||||||| |||| ||||||||||||||||||| | ||||||||    
T  27031294 gcacgccttcagttcgctcatg-acaaagctctgttcgcttaagcgacctatggttcgcttaagcgaaccagttccag 27031218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 8614978 - 8615265
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  8614978 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 8615077  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||| |||||||||| ||||||||||||||||||                    |||||||||||||  ||||||||||||||| ||||||||||||||||    
T  8615078 aaaggaaggaagcttctgaaccaaggtccgttc--------------------gcttaagcgaacctattacagagagcaaccgttctgttcgcttacaa 8615157  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  8615158 gcacgcttccagttcgctcatgaagaaagatcagttcgcttaagcgacctacgattcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 8615257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 4755565 - 4755259
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||| ||||| ||||||| | |||| |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||     
T  4755565 agttatctaaggaaaagttaccatttgagtgtatttttaccatttatgccttacatgcctgattctacccaatttatgcaggaaatgacaagcaaagacc 4755466  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    ||||||||| || || |||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |   |  |||||||||| |    
T  4755465 aaaagaagggagatcttgaaccaaggtcagttcgcttaagcgaacccctgttcgcttaagcgaacctgttacagagagcaccggattagttcgcttacta 4755366  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    ||||||||||||||||||||||||| | |  ||||||||||| |||| ||   |||||||||||||| | |||||||| |||||||||| ||||||||||    
T  4755365 gcacgcttccagttcgctcatgaagaaaggccagttcgcttaagcgacctcaagttcgcttaagcgaaccagttccagagagctccagg-aagttcgctc 4755267  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  4755266 acaagttc 4755259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 52045590 - 52045446
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||     
T  52045590 agttatctaaggaaaagctaccatttgagtgtaattttaccatttatgctttacatgcctgattctagccaatttatgcaggaaatgacaagcaaggacc 52045491  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 145  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  52045490 aaaagaaggaagcttctgaaccaaggtccgttcgcttaagtgaac 52045446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 52308700 - 52308523
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||     
T  52308700 agttatctaaggaaaagctaccatttgagtgtaattttaccatttatgctttacatgtctgattctacccaatttatgcaggaaacgacaagcaaggac- 52308602  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| ||| |||||||||||||    | |||||||||||| || ||||||||||||||||||||| | |||||||||    
T  52308601 -caagaaagaacctcctgaaccaagagatggtcgcttaagcgaccttctgttcgcttaagcgaaccagatccagagagca 52308523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 36470128 - 36469873
Alignment:
Q  9 aaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaag 108  Q
    ||||||||||||||| ||||||| | || | ||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||     
T  36470128 aaggaaaagctaccatttgagtgtatttataccaattatgctttacatgcctgattctacca-atttatgcaggaaatgacaagcaaggaccaaaagaat 36470030  T
Q  109 gaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgctt 208  Q
    || |||||||||||||||   |||||||||||||||| || || |||||||||| ||||||| ||| |||| ||||  | ||||||||||||| |||||     
T  36470029 gatgctcctgaaccaaggggagttcgcttaagcgaac-cccgtacgcttaagcgtaccagttccagtgagc-accagccagttcgcttacaagtacgctc 36469932  T
Q  209 ccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcga 267  Q
    ||||  ||||||||||  |  | ||||||||||| ||| || || ||||||||||||||    
T  36469931 ccaggacgctcatgaaaaatcaacagttcgcttaagcgtaccatagttcgcttaagcga 36469873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 27031262 - 27031083
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacg 229  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||| || |     | ||||||||| |||||||||||||||||||||||||| |      
T  27031262 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagaacaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 27031163  T
Q  230 a-tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
      ||| |||||||| |||| ||||||||||||||||||| | |||| ||| |||||||||||||||||||||||| ||||    
T  27031162 tgtcatttcgcttaagcgacctatggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcacacgttc 27031083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 10386710 - 10386597
Alignment:
Q  65 ctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaa 164  Q
    |||||| |||||||||||||||||||||||||||| ||  ||| |||  ||||||||||||    | |||||||||||| ||||||||||||||||||||    
T  10386710 ctacccaatttatgcaggaaacgacaagcaaggaccaa--gaaagaacttcctgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaa 10386613  T
Q  165 ccagttacagagagca 180  Q
    |||| | |||||||||    
T  10386612 ccagctccagagagca 10386597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10407657 - 10407589
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctacc 69  Q
    |||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  10407657 agttatctaaggaaaagctaccatttgagtgtaattttaccatttatgctttacatgcctgattctacc 10407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 52045461 - 52045362
Alignment:
Q  150 gttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaac 249  Q
    ||||||||||| ||||||||| |||||||||||||   ||||||||||||||||||| | ||||||||||||||   | | |||||||||||| ||||||    
T  52045461 gttcgcttaagtgaaccagttccagagagcaaccagcttgttcgcttacaagcacgccttcagttcgctcatgagaaaagttcagttcgcttaagcgaac 52045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 52045377 - 52045323
Alignment:
Q  254 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  52045377 gttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcacaagttc 52045323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 11260468 - 11260392
Alignment:
Q  40 ccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac-gaaaagaaggaagctc 115  Q
    ||||||||| ||||||||  ||||||||||| |||||||||||||| ||||||||| |||  |||||||||||||||    
T  11260468 ccatttatgttttacatgtttgattctacccaatttatgcaggaaatgacaagcaatgacacaaaagaaggaagctc 11260392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 33247396 - 33247458
Alignment:
Q  35 tttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaagga 98  Q
    |||| ||||||||||||||||||||||||  | | || ||||||||||||||||||||||||||    
T  33247396 ttttaccatttatgctttacatgcctgatatt-caccttttatgcaggaaacgacaagcaagga 33247458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 33492902 - 33492595
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||     
T  33492902 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgcttt-catgcctgattctacccaatttatgcaggaaatgacaagaaaggacc 33492804  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcct-gttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttaca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  33492803 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactgggagttcgattaagcgaaccaattacagagagcaaccattctgttcgcttaca 33492704  T
Q  200 agcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgct 299  Q
    ||||| |||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33492703 agcacacttccagttcgctcatgaagaaaggtcagttcgcttaagcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgct 33492604  T
Q  300 cacaggttc 308  Q
    |||| ||||    
T  33492603 cacatgttc 33492595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 12168883 - 12168637
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  12168883 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 12168784  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||| |||||||||||||    
T  12168783 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcaattaagcgaactaattacagagagcaaccattatgttcgcttacaa 12168684  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 247  Q
    ||||||||||||||||||||||||| | | |||||||||||| ||||    
T  12168683 gcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 12168637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 38122744 - 38122463
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  38122744 agttatctaaggaaaagctaccatttgagtgtaatattaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 38122645  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  38122644 aaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaacccctgttcgcttaagcgaaccagttacagagagcaactgttctattcgcttacaa 38122545  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagc 283  Q
    |||||| | ||||||||||||| |  | | |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||    
T  38122544 gcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagc 38122463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 16833457 - 16833150
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||| || | |||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||     
T  16833457 agttatctaaggaaaagctaccatttgattgtatttttaccatttatgctttacatgcctgattctatccaatttatgcaggaaatgacaagcaaggacc 16833358  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||| ||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||| ||||||||||||||  ||||| |||||||    
T  16833357 aaaagaaggaggctcctgaaccaaggtcagctcgcttaagcaaacccctgttcgcttaagcgaaccagttccagagagcaaccatcatgttctcttacaa 16833258  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 300  Q
    |||||| | | ||||||||||||   |   |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  16833257 gcacgccttcggttcgctcatgagaaaaattcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccaggaaatttcgctc 16833158  T
Q  301 acaggttc 308  Q
    ||| ||||    
T  16833157 acatgttc 16833150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 13218742 - 13218435
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | || | ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||     
T  13218742 agttatctaaggaaaagctaccatttgagtgtatttataccatttatgctttacatgcctgattctacccaatttatgcaggaaatgataagcaagaacc 13218643  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattct-gttcgcttaca 199  Q
    |||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||| |||| |||||||| ||||   | |||| |||||     
T  13218642 aaaagaaggaagctcctgaaccaaggtcagttcgcttaagcgaacccttgttctcttaagcgaacaagttccagagagc-accagaatggttcacttact 13218544  T
Q  200 agcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgct 299  Q
    |||||||||| ||||||||||||||| | |  ||||||||||| |||| ||   |||||||||||||| |||||||||| ||||| ||||||||||||||    
T  13218543 agcacgcttctagttcgctcatgaagaaaggccagttcgcttaagcgacctcatgttcgcttaagcgaacaagttccagagagcttcaggaaagttcgct 13218444  T
Q  300 cacaggttc 308  Q
    |||| ||||    
T  13218443 cacaagttc 13218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 38122512 - 38122333
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca--accattctgttcgcttacaagcacgcttccagttcgctcatgaagta 227  Q
    |||||||||||||| ||   |||||||||||||||| |||| |||||||||  |  |||||  |||||||| |||||||||||||||||||||||||| |    
T  38122512 gttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagcacaaggattct--tcgcttactagcacgcttccagttcgctcatgaagaa 38122415  T
Q  228 c-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
      | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||| ||||    
T  38122414 aaggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcacacgttc 38122333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 12168650 - 12168596
Alignment:
Q  254 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  12168650 gttcgcttaagcgacaaagttccagtgagctccaggaaagttcgctcacatgttc 12168596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 13829659 - 13829756
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||||| | |||||||||||||| || | || | |||| | |||| |||||||||||||||||||||| | |||| ||||||||| |||||||||||||    
T  13829659 agttatctgaggaaaagctaccaatt-attgtacttttactatttgtgctttacatgcctgattctactcaatttgtgcaggaaatgacaagcaaggac 13829756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39453411 - 39453508
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||||| ||||||||| |||||| |||  || |||||| ||||||||||||||  ||||| | ||||| | |||| || |||||| |||||||||||||    
T  39453411 agttatctaaggaaaaactaccatttgt-tgtaattttgccatttatgctttatgtgccttactctactcaatttgtgtaggaaatgacaagcaaggac 39453508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 21717856 - 21717901
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacaga 175  Q
    |||||||||||||| ||| ||||||||||||||||| |||| ||||    
T  21717856 gttcgcttaagcgacctcatgttcgcttaagcgaacaagttccaga 21717901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 185257 - 185498
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  185257 agttatataaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 185356  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaa 200  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  185357 aaaagaaggaagctcctgaaccaagggccgttcgcttaagcaaactcctgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaa 185456  T
Q  201 gcacgcttccagttcgctcatgaagtacgatcagttcgctta 242  Q
     |||||||||||||||||||||||| | | ||||||||||||    
T  185457 acacgcttccagttcgctcatgaagaaaggtcagttcgctta 185498  T

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Target: scaffold0015; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 174099 - 174224
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  174099 agttatctaaggaaaagctaccatttgagtgcaattttaccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 174198  T
Q  101 aaaagaaggaagctcctgaaccaagg 126  Q
    ||||||||||||||||||||||||||    
T  174199 aaaagaaggaagctcctgaaccaagg 174224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 354447 - 354282
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  354447 agttatctaaggaaaagctaccatttgagtgtaatattaccatttatgctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggacc 354348  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaacc 166  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  354347 aaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaacccctgttcgcttaagcgaacc 354282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 8684148 - 8683964
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaattttt-ccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||||| |||||||||||||||  ||||||| | ||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  8684148 agttatctaaggaaaagctaccgtttgagtgtattttttaccatttatgctttacatacctgattctacccaatttatgcaggaaatgacaagcaaggac 8684049  T
Q  100 gaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaacca 184  Q
     |||||||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  8684048 caaaagaaggaggctcctgaaccaaggtcagtttgcttaagccaacccctgttcgcttaagcgaaccagttccagagagcaacca 8683964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 32522440 - 32522619
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| ||||||||||||| || ||||||| | || | ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||     
T  32522440 agttatctaaggaaaagctatcatttgagtgtatttataccatttatgctttacatgcctgattctacccaatttacgcaggaaatgacaagcaaggacc 32522539  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
    || |||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||  ||||||||    
T  32522540 aatagaaggaagctcatgaatcaaggtcagttcgcttaagcgacctcctgttcgcttaagcgaacaagttctagagagca 32522619  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 29223168 - 29223345
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  29223168 agttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaggac- 29223266  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| |||  ||||||||||||    | |||||||||||| |||||||||||||||||||||||| | |||||||||    
T  29223267 -caagaaagaacttcctgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaaccagctccagagagca 29223345  T

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Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 29336467 - 29336644
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  29336467 agttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaggac- 29336565  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 180  Q
      ||||| |||  ||||||||||||    | |||||||||||| |||||||||||||||||||||||| | |||||||||    
T  29336566 -caagaaagaacttcctgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaaccagctccagagagca 29336644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 8688139 - 8688062
Alignment:
Q  231 tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    |||||| ||||| |||| | ||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  8688139 tcagtttgcttaagcgaccaatggttcgcttaagcgaacaagttccagagagctctaggaaagttcgctcacaagttc 8688062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 36668546 - 36668450
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaagga 98  Q
    |||||| ||||||||||||| || |||  |||| |||| ||||||||||||||||||||||||| | ||| ||||||||||||||  |||||| ||||    
T  36668546 agttatctaaggaaaagctatcaattgt-tgcatttttaccatttatgctttacatgcctgattttgcccaatttatgcaggaaaatacaagccagga 36668450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 270798 - 270843
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacaga 175  Q
    |||||||||||||| ||| ||||||||||||||||| |||| ||||    
T  270798 gttcgcttaagcgacctcatgttcgcttaagcgaacgagttccaga 270843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 79927 - 79744
Alignment:
Q  40 ccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaa 139  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||||| ||||||||| ||| |||||||||| |||| |||||||||||| ||||||||||    
T  79927 ccatttatgctttacatgccttattctacccaatttatgtaggaaatgacaagcaaagaccaaaagaaggaggctcttgaaccaaggtcggttcgcttaa 79828  T
Q  140 gcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatga 223  Q
    || ||| ||| || | ||||| ||||||||| |||||||||||||  |||||||||||||||||||| | | ||||||||||||    
T  79827 gcaaacccctatttggttaagtgaaccagttccagagagcaaccagcctgttcgcttacaagcacgccttcggttcgctcatga 79744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 76881 - 76836
Alignment:
Q  254 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgct 299  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||    
T  76881 gttcgcttaagcgaacaagttccagagagctccaggaaagttcgct 76836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 17141 - 16960
Alignment:
Q  40 ccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaa 139  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| ||  ||| ||||||||||| |||| ||  ||||||||||    
T  17141 ccatttatgctttacgtgcttgattctacccaatttatgcaggaaatgacaagcaaggaccaa--gaaagaagctcctgagccaaagtttgttcgcttaa 17044  T
Q  140 gcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaa 224  Q
    |||| |||  | ||||||||||||||||||| ||| ||||||||  ||||||||||||||||||||||||| |||||||||||||    
T  17043 gcgacctca-gctcgcttaagcgaaccagttccagggagcaacccatctgttcgcttacaagcacgcttcctgttcgctcatgaa 16960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 117338 - 117194
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacg 100  Q
    |||||| |||||||||||||||| |||||||   || | |||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||     
T  117338 agttatctaaggaaaagctaccatttgagtgtgtttataccatttatgctttacatgtctgattctacccaatttatgcaggaaatgacaaacaaggacc 117239  T
Q  101 aaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 145  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  117238 aaaagaaggaagctcatgaaccaaggtccgttcgcttaagcgaac 117194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 117209 - 117076
Alignment:
Q  150 gttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaac 249  Q
    |||||||||||||||| |||| ||||||||||||| | |||||||| |||||||| ||  ||||||||||||||   | | |  ||||||||| |||| |    
T  117209 gttcgcttaagcgaacaagttccagagagcaaccaatatgttcgctgacaagcacactctcagttcgctcatgagaaaagttatgttcgcttaagcgacc 117110  T
Q  250 tatggttcgcttaagcgaccaagttccagtgagc 283  Q
    ||| ||| |||||||||| | |||||||| ||||    
T  117109 tattgtttgcttaagcgaaccagttccagagagc 117076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 117125 - 116947
Alignment:
Q  130 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 228  Q
    |||||||||||||| ||  |||| ||||||||||||||||| ||||||||  |||   ||||||||||| || |||||| ||||| |||| ||||| |      
T  117125 gttcgcttaagcgacctattgtttgcttaagcgaaccagttccagagagcc-ccaaaatgttcgcttaccagtacgctttcagtttgctcctgaagaaaa 117027  T
Q  229 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 308  Q
    | |||||||||||| |||| || | |||||||||||| | |||||| ||  ||||||||| |  ||||||||||| ||||    
T  117026 gttcagttcgcttaagcgacctcttgttcgcttaagcaaacaagtttcaaagagctccagaattgttcgctcacaagttc 116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 1945 - 2050
Alignment:
Q  35 tttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcg 134  Q
    |||| |||||||||||||||||||||||||    ||| ||||||||||||| ||||||||||||  | ||||| ||||||| |||||||| ||| || ||    
T  1945 ttttaccatttatgctttacatgcctgatttcctcccttttatgcaggaaatgacaagcaagga--acaagaaagaagctcatgaaccaaagtcagtacg 2042  T
Q  135 cttaagcg 142  Q
    ||||||||    
T  2043 cttaagcg 2050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10263 - 10166
Alignment:
Q  1 agttatttaaggaaaagctaccagttgagtgcaatttttccatttatgctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 99  Q
    |||||| ||||||||| |||||| |||  || |||||| ||||||||||||||  ||||| ||||||| | |||| || |||||| |||||||||||||    
T  10263 agttatctaaggaaaaactaccatttgt-tgtaattttgccatttatgctttatgtgccttattctactcaatttgtgtaggaaatgacaagcaaggac 10166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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