View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_48 (Length: 291)

Name: NF14445_low_48
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_48
NF14445_low_48
[»] chr7 (15 HSPs)
chr7 (19-279)||(31158676-31158936)
chr7 (19-279)||(10346706-10346966)
chr7 (20-279)||(23794596-23794855)
chr7 (19-279)||(12183367-12183627)
chr7 (25-279)||(2630927-2631161)
chr7 (19-261)||(22322323-22322544)
chr7 (19-195)||(7143159-7143315)
chr7 (19-151)||(31878123-31878255)
chr7 (19-151)||(19472790-19472920)
chr7 (19-151)||(22817940-22818070)
chr7 (101-279)||(22322200-22322379)
chr7 (19-116)||(2798104-2798201)
chr7 (21-109)||(45501201-45501289)
chr7 (21-70)||(2477184-2477233)
chr7 (101-150)||(2797986-2798035)
[»] chr6 (12 HSPs)
chr6 (19-279)||(3538549-3538809)
chr6 (19-274)||(34006006-34006261)
chr6 (19-261)||(26510920-26511161)
chr6 (19-261)||(26516036-26516277)
chr6 (19-271)||(24161653-24161885)
chr6 (94-274)||(26510697-26510878)
chr6 (94-274)||(26515813-26515994)
chr6 (101-261)||(26510815-26510976)
chr6 (101-261)||(26515931-26516092)
chr6 (19-96)||(9934570-9934645)
chr6 (19-95)||(15641825-15641899)
chr6 (19-67)||(26603726-26603774)
[»] chr5 (14 HSPs)
chr5 (19-279)||(11766257-11766517)
chr5 (19-279)||(14343993-14344253)
chr5 (19-279)||(11723676-11723936)
chr5 (19-261)||(30607600-30607841)
chr5 (19-279)||(7314486-7314726)
chr5 (19-261)||(34455695-34455956)
chr5 (19-240)||(9403821-9404021)
chr5 (101-279)||(34455900-34456079)
chr5 (101-274)||(9404006-9404180)
chr5 (19-151)||(24835260-24835390)
chr5 (19-151)||(33434108-33434238)
chr5 (101-279)||(30607477-30607656)
chr5 (19-116)||(6269418-6269515)
chr5 (224-279)||(6269595-6269650)
[»] chr8 (13 HSPs)
chr8 (19-279)||(3298303-3298563)
chr8 (19-279)||(28926544-28926804)
chr8 (19-272)||(9068574-9068827)
chr8 (19-279)||(27347548-27347808)
chr8 (19-236)||(22180011-22180227)
chr8 (19-279)||(27353628-27353868)
chr8 (19-261)||(8743807-8744028)
chr8 (161-280)||(22180256-22180375)
chr8 (35-218)||(28369650-28369813)
chr8 (98-279)||(8743684-8743866)
chr8 (19-116)||(36737426-36737521)
chr8 (225-279)||(28369800-28369854)
chr8 (94-150)||(22180293-22180349)
[»] chr4 (13 HSPs)
chr4 (19-279)||(4839537-4839797)
chr4 (19-261)||(5274055-5274296)
chr4 (19-248)||(46692571-46692799)
chr4 (19-259)||(55326275-55326515)
chr4 (19-189)||(42533436-42533606)
chr4 (156-279)||(22047319-22047442)
chr4 (101-279)||(5273932-5274111)
chr4 (102-258)||(46692457-46692613)
chr4 (19-151)||(44432556-44432686)
chr4 (19-87)||(22047248-22047316)
chr4 (101-150)||(42533299-42533348)
chr4 (101-151)||(42533392-42533442)
chr4 (202-279)||(42533368-42533445)
[»] scaffold1494 (1 HSPs)
scaffold1494 (19-279)||(1066-1326)
[»] chr3 (13 HSPs)
chr3 (25-279)||(7653621-7653875)
chr3 (19-279)||(3587901-3588161)
chr3 (19-249)||(27031218-27031447)
chr3 (19-279)||(8615025-8615265)
chr3 (22-279)||(4755259-4755515)
chr3 (19-238)||(36469873-36470089)
chr3 (19-116)||(52045446-52045543)
chr3 (101-279)||(27031083-27031262)
chr3 (19-151)||(52308523-52308653)
chr3 (36-151)||(10386597-10386710)
chr3 (121-220)||(52045362-52045461)
chr3 (225-279)||(52045323-52045377)
chr3 (21-86)||(11260392-11260458)
[»] chr1 (9 HSPs)
chr1 (25-279)||(33492595-33492850)
chr1 (19-254)||(38122463-38122697)
chr1 (19-218)||(12168637-12168836)
chr1 (19-279)||(16833150-16833410)
chr1 (19-279)||(13218435-13218695)
chr1 (101-279)||(38122333-38122512)
chr1 (225-279)||(12168596-12168650)
chr1 (19-70)||(13829705-13829756)
chr1 (101-146)||(21717856-21717901)
[»] scaffold0015 (2 HSPs)
scaffold0015 (19-213)||(185304-185498)
scaffold0015 (19-97)||(174146-174224)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-137)||(354282-354400)
[»] chr2 (6 HSPs)
chr2 (19-155)||(8683964-8684100)
chr2 (19-151)||(32522487-32522619)
chr2 (19-151)||(29223215-29223345)
chr2 (19-151)||(29336514-29336644)
chr2 (202-279)||(8688062-8688139)
chr2 (101-146)||(270798-270843)
[»] scaffold0014 (2 HSPs)
scaffold0014 (19-194)||(79744-79919)
scaffold0014 (225-270)||(76836-76881)
[»] scaffold0059 (1 HSPs)
scaffold0059 (19-195)||(16960-17133)
[»] scaffold0019 (3 HSPs)
scaffold0019 (19-116)||(117194-117291)
scaffold0019 (121-254)||(117076-117209)
scaffold0019 (101-279)||(116947-117125)
[»] scaffold0744 (1 HSPs)
scaffold0744 (19-113)||(1958-2050)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 31158936 - 31158676
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31158936 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 31158837  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  31158836 ctgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 31158737  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31158736 accatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 31158676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 10346966 - 10346706
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10346966 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 10346867  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  10346866 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 10346767  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10346766 cctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 10346706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 23794596 - 23794855
Alignment:
Q  20 ctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcc 119  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23794596 ctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggttcgttcgcttaagcgaactcc 23794695  T
Q  120 tgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaa 219  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||     
T  23794696 tgttcgcttaagcgaaccaattacagagagcaaccgttatgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgac 23794795  T
Q  220 ctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23794796 ctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 23794855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 12183367 - 12183627
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |    
T  12183367 gcttcacatgcctgattctacccaatttatgcaggaaacgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtcagttcgcttaagcgaaccc 12183466  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    ||||||||||||| |||| |||| |||||||||||||  ||||||||||| | |||||| | ||||||||||||||   | | |||||||||||| | ||    
T  12183467 ctgttcgcttaagtgaacaagttccagagagcaaccagcctgttcgcttaaaggcacgccttcagttcgctcatgagaaaagttcagttcgcttaagtga 12183566  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  12183567 cctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcacaagttc 12183627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 2630927 - 2631161
Alignment:
Q  25 catgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttc 124  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||                        
T  2630927 catgcctgattctacccaatttatgcaggaaatgacaagaaaggaccaaaagaaggaagctcctgaaccaaggtccgttc-------------------- 2631006  T
Q  125 gcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatg 224  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||| |||||    
T  2631007 gcttaagcgaaccaattacagagagcaaccgttttgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatg 2631106  T
Q  225 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2631107 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 2631161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 22322544 - 22322323
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||| ||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||          
T  22322544 gctttacatacctaattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtctgttcgcttaagc------ 22322451  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
                  |||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |  | | |||||||||||| ||||    
T  22322450 --------------gaaccagttacagagagcaaccgttctgttcgcttacaagcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcga 22322366  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
     ||||||||||||||||||| | |||||||| || ||||||||    
T  22322365 cctatggttcgcttaagcgaaccagttccagagaactccagga 22322323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 7143159 - 7143315
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||                       
T  7143159 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtc------------------- 7143239  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaa 195  Q
     ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||||||    
T  7143240 -tgttcgcttaagcgaaccagttacagagagcaaccgttctattcgcttacaagcacgccttcagttcgctcatgaa 7143315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 31878123 - 31878255
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||||||| |||| | ||||||  |||    
T  31878123 gctttacatgcctgattctacccaatttatgtaggaaatgacaagcaaggaccaaaagaaggaagcttctgaatcaaggtcagttcacgtaagcggcctc 31878222  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||||  ||| |||||||||    
T  31878223 ctgttcgcttaagcgaacacgttccagagagca 31878255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 19472920 - 19472790
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||   ||||| ||| |||||||||||||    | |||||||||||| |||    
T  19472920 gctttacatgcctaattctacccaatttatgcaggaaacgacaagcaaggac--caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctc 19472823  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||||||||| |||||||||    
T  19472822 ctgttcgcttaagcgaaccagttccagagagca 19472790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 22817940 - 22818070
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||   ||||| ||| ||| |||||||||    | |||||||||||| |||    
T  22817940 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggac--caagaaagaacctcttgaaccaagagatggtcgcttaagcgacctc 22818037  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||||||||| |||||||||    
T  22818038 ctgttcgcttaagcgaaccagttccagagagca 22818070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 22322379 - 22322200
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||| |  |     | ||| ||||| |||||||||||||||| ||||||||| |      
T  22322379 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagaactccaggattcttcacttactagcacgcttccagttccctcatgaagaaaa 22322280  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    | ||| |||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  22322279 ggtcatttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcacacgttc 22322200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 2798201 - 2798104
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 116  Q
    ||||||||| |||||||||| || |||||||||||||| ||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||||    
T  2798201 gctttacatacctgattctatccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgagtcaaggtcagttcgcttaagcgaac 2798104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 45501289 - 45501201
Alignment:
Q  21 tttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgctta 109  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  45501289 tttacatgcctgattctacccaatttatgcagtaaatgacaagcaaggaccaaaagaaggaagctcatgaaccaaggtctgttcgctta 45501201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 2477184 - 2477233
Alignment:
Q  21 tttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 70  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  2477184 tttacatgcctgattctacctaatttatgcaggaaatgacaagcaaggac 2477233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 2798035 - 2797986
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagc 150  Q
    |||||||||||||| ||| ||||| |||||| ||||||||| ||||||||    
T  2798035 gttcgcttaagcgacctcatgttcacttaagtgaaccagttccagagagc 2797986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 3538549 - 3538809
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3538549 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 3538648  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  3538649 ctgttagcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 3538748  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3538749 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 3538809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 34006006 - 34006261
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||||||||||||| || |||||||||  ||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  34006006 gctttacatgcctgattctatccaatttatgcataaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaatgtccgttcgcttaagcgaactc 34006105  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||| ||||    
T  34006106 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcatttcgcttaagcga 34006205  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcaca 274  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34006206 cctatggttcgcttaagcgaacaagttccagtgagctccaggaaagttcgctcaca 34006261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 26511161 - 26510920
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  26511161 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaaccc 26511062  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| | ||||||||||||| |  | | |||||||||||| ||||    
T  26511061 ctgttcgcttaagcgaaccagttacagagagcaactgttctgttcgcttacaagcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcga 26510963  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
     |||||||||||||||| || | |||||||| |||| ||||||    
T  26510962 cctatggttcgcttaagtgaaccagttccagagagcaccagga 26510920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 26516277 - 26516036
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  26516277 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaaccc 26516178  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| | ||||||||||||| |  | | |||||||||||| ||||    
T  26516177 ctgttcgcttaagcgaaccagttacagagagcaactgttctgttcgcttacaagcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcga 26516079  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
     |||||||||||||||| || | |||||||| |||| ||||||    
T  26516078 cctatggttcgcttaagtgaaccagttccagagagcaccagga 26516036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 24161885 - 24161653
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||||||||||||| || ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||                 
T  24161885 gctttacatgcctgattctatccaatttatgtaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtcagttcg------------- 24161799  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
           ||||||||||| |||| |||||||||||||   ||||||||||||||||||| | ||||||||||||||   | | ||| |||||||| ||||    
T  24161798 -------cttaagcgaacaagttccagagagcaaccagcatgttcgcttacaagcacgccttcagttcgctcatgagaaaagttcaattcgcttaagcga 24161706  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctc 271  Q
     ||||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  24161705 cctatggttcgcttaagcgaacaagttctagagagctccaggaaagttcgctc 24161653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 26510878 - 26510697
Alignment:
Q  94 aaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatg 193  Q
    |||||| |||||||||||||| ||   |||| ||||||||||| ||||  |||||||| |     | ||||||||| ||||||||||||||| |||||||    
T  26510878 aaggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccaggattcttcgcttactagcacgcttccagtttgctcatg 26510779  T
Q  194 aagtac-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcaca 274  Q
    ||| |  | |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26510778 aagaaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcaca 26510697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 26515994 - 26515813
Alignment:
Q  94 aaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatg 193  Q
    |||||| |||||||||||||| ||   |||| ||||||||||| ||||  |||||||| |     | ||||||||| ||||||||||||||| |||||||    
T  26515994 aaggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccaggattcttcgcttactagcacgcttccagtttgctcatg 26515895  T
Q  194 aagtac-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcaca 274  Q
    ||| |  | |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26515894 aagaaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcaca 26515813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 26510976 - 26510815
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||   ||||||||||| ||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  26510976 gttcgcttaagcgacctatggttcgcttaagtgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 26510877  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
    | |||||||||||| |||| ||||||||| ||||||||| ||||||| || |||| ||||||    
T  26510876 ggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccagga 26510815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 26516092 - 26515931
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||   ||||||||||| ||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  26516092 gttcgcttaagcgacctatggttcgcttaagtgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 26515993  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
    | |||||||||||| |||| ||||||||| ||||||||| ||||||| || |||| ||||||    
T  26515992 ggtcagttcgcttaagcgacctatggttcccttaagcgaacaagttctagagagcaccagga 26515931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 9934645 - 9934570
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaag 96  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||   ||||| ||| |||||||||||||    
T  9934645 gctttacatgcctgattctatccaatttatgcaggaaacgacaagcaaggac--caagaaagaacctcctgaaccaag 9934570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 15641825 - 15641899
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaa 95  Q
    |||||||||||||||||| | ||| ||||||| ||||| ||||||||||||  | ||||| ||||||| ||||||||    
T  15641825 gctttacatgcctgattccaacccttttatgctggaaatgacaagcaagga--acaagaaagaagctcatgaaccaa 15641899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 26603726 - 26603774
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaag 67  Q
    ||||||||||||||||||||| | |||| ||||||||| ||||||||||    
T  26603726 gctttacatgcctgattctactcaatttgtgcaggaaatgacaagcaag 26603774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 11766257 - 11766517
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11766257 gctttacatgtctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 11766356  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  11766357 ctgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 11766456  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11766457 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 11766517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 14343993 - 14344253
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14343993 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggttcgttcgcttaagcgaactc 14344092  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||| ||||    
T  14344093 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcccttaagcga 14344192  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14344193 cctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 14344253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 11723936 - 11723676
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  11723936 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaatgaccaaaagaaggaagctcatgaaccaaggtccgttcgcttaagcgaactc 11723837  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| | | |||||||||||| ||||    
T  11723836 ctgttcgcttaagcgaaccaattacagagagcaaccgttttgttcgcttacaggcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 11723737  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11723736 cctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 11723676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 30607841 - 30607600
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |    
T  30607841 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaaccc 30607742  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||| |  | | |||||||||||| ||||    
T  30607741 ctgttcgcttaagcgaaccagttacagagagcaaccgttctattcgcttacaagcacgccttcagttcgctcatg-ataaagctcagttcgcttaagcga 30607643  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
     ||||||||||||||||||| |||||||||| |||| ||||||    
T  30607642 cctatggttcgcttaagcgaacaagttccagagagcaccagga 30607600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 7314486 - 7314726
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||                  
T  7314486 gctttacatgcctgattctaccaaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttc-------------- 7314571  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
          |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||| ||||    
T  7314572 ------gcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcactcatgaagaaaggtcagttcgcttaagcga 7314665  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7314666 cctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 7314726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 34455695 - 34455956
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggt-------------------- 98  Q
    |||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||                        
T  34455695 gctttacatgcccgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaaccc 34455794  T
Q  99 ccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagta 198  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | | ||||||||||||| |  |    
T  34455795 ctgttcgcttaagcgaacccctgttcgcttaagcgaaccagttacagagagcaaccgttctattcgcttacaagcacaccttcagttcgctcatg-acaa 34455893  T
Q  199 cgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
     | |||||||||||| |||| ||||||||||||||||||| | |||||||| |||| ||||||    
T  34455894 agctcagttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccagga 34455956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 9403821 - 9404021
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||           
T  9403821 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtctgttcgcttaag------- 9403913  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
                 ||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||| | |  | | || ||||||||| ||||    
T  9403914 -------------cgaaccagttacagagagcaaccgttctattcgcttacaagcacgccttcagttcgctca-ggacaaagctccgttcgcttaagcga 9403999  T
Q  219 actatggttcgcttaagcgacc 240  Q
     |||||||||||||||||||||    
T  9404000 cctatggttcgcttaagcgacc 9404021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 279
Target Start/End: Original strand, 34455900 - 34456079
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  34455900 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggatttttcgcttactagcacgcttccagttcgctcatgaagaaaa 34455999  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | | || ||| |||||||||||||||||||||||| ||||    
T  34456000 ggtcatttcgcttaagcgacctacggttcgcttaagcgaaccacttacagagagctccaggaaagttcgctcacacgttc 34456079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 9404006 - 9404180
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||| ||||||||||||||||||| |      
T  9404006 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggattcttcgcttactagcacgtttccagttcgctcatgaagaaaa 9404105  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcaca 274  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| ||||||||||||||||||||||||    
T  9404106 ggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcaca 9404180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 24835260 - 24835390
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||   ||||| ||| |||||||||||||    | |||||||||||| |||    
T  24835260 gctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaagac--caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctc 24835357  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||| ||| | |||||||||    
T  24835358 ctgttcgcttaagcgaagcagctccagagagca 24835390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 33434108 - 33434238
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||| ||| |||||||||||||    | |||||||||||| |||    
T  33434108 gctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaggac--caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctc 33434205  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
     |||||||||||||| ||||| | |||||||||    
T  33434206 ttgttcgcttaagcggaccagatccagagagca 33434238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 30607656 - 30607477
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||   |||||||||||||||| |||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  30607656 gttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 30607557  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| |||||||| ||||||||||||||| ||||    
T  30607556 ggtcatttcgcttaagcgacctacggttcgcttaagcgaactagttacagagagctccaagaaagttcgctcacacgttc 30607477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 6269418 - 6269515
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 116  Q
    |||||||||| |||||||||||| |||||| ||| ||| ||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||    
T  6269418 gctttacatgtctgattctacccaatttatacagaaaatgacaagcaaggaccaaaagaaggaagctcttgaaccaaggtcacttcgcttaagcgaac 6269515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 6269595 - 6269650
Alignment:
Q  224 ggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    ||||||||||||||| ||||||| || ||||||||| |||||||||||||| ||||    
T  6269595 ggttcgcttaagcgaacaagttcgagagagctccagtaaagttcgctcacaagttc 6269650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 3298303 - 3298563
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3298303 gctttacatgtctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaacta 3298402  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||| ||||    
T  3298403 ctgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcatttcgcttaagcga 3298502  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3298503 actatggttcgcttaagcgaccaagttccagtgagctccagaaaagttcgctcacatgttc 3298563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 28926804 - 28926544
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28926804 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 28926705  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  | | |||||||||||| ||||    
T  28926704 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaacaaaggtcagttcgcttaagcga 28926605  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28926604 cctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 28926544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 9068827 - 9068574
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9068827 gctttacatgcctgattctacccaatttatgcaggaaatgacaagtaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 9068728  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  9068727 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 9068628  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctca 272  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9068627 cctatggttcgcttaagcgaccaagttccagtgagctacaggaaagttcgctca 9068574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 27347548 - 27347808
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  27347548 gctttacatgcctgattctatccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcttgaaccaaggtccgttcgcttaagcgaactc 27347647  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||| | | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||| ||||    
T  27347648 ctgttcgcttaagcgaccgaattacagagagcaaccgttctgttcgcttacaagcatgcttccagttcgctcatgaaggaaggtcagttcgcttaagcga 27347747  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27347748 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 27347808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 22180011 - 22180227
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  22180011 gctttacatgcctgattctactcaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaaccc 22180110  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    ||||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||| | ||||||||||||| |  | | |||||||||||| ||||    
T  22180111 ctgttcgcttaagcgaatcagttccagagagcaatcgttctgttcgcttacaagcacgccttcagttcgctcatg-acaaagttcagttcgcttaagcga 22180209  T
Q  219 actatggttcgcttaagc 236  Q
     |||||||||||||||||    
T  22180210 cctatggttcgcttaagc 22180227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 27353628 - 27353868
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||                  
T  27353628 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcttgaaccaaggtccgttc-------------- 27353713  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
          |||||||| | | | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||| ||||    
T  27353714 ------gcttaagcaaccgaattacagagagcaaccgttctgttcgcttacaagcatgcttccagttcgctcatgaaggaaggtcagttcgcttaagcga 27353807  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27353808 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 27353868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 8744028 - 8743807
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||          
T  8744028 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcttgaaccaaggtctgttcgcttaagc------ 8743935  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
                  |||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||| | |  | | || ||||||||| ||||    
T  8743934 --------------gaaccagttacagagagcaaccgttctattcgcttacaagcacgccttcagttcgctca-ggacaaagctccgttcgcttaagcga 8743850  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
     ||||||||||||||||||| | |||||||| |||| ||||||    
T  8743849 cctatggttcgcttaagcgaaccagttccagagagcaccagga 8743807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 22180256 - 22180375
Alignment:
Q  161 ttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccagg 260  Q
    ||||||||| |||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||     
T  22180256 ttcgcttaccagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagctccagc 22180355  T
Q  261 aaagttcgctcacaggttct 280  Q
    |||||||||||||| |||||    
T  22180356 aaagttcgctcacaagttct 22180375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 28369650 - 28369813
Alignment:
Q  35 tctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcga 134  Q
    ||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||                    ||||||||||    
T  28369650 tctacccaatttatgcaggaaatgacacgcaaggaccaaaagaaggaagctcctgaaccaaggtccgttc--------------------gcttaagcga 28369729  T
Q  135 accagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  28369730 accatttacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 28369813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 8743866 - 8743684
Alignment:
Q  98 tccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagt 197  Q
    ||||||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||||||||| |||||||||||||     
T  8743866 tccgttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccatttcgctcatgaaga 8743767  T
Q  198 ac-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |  | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||| ||||    
T  8743766 aaaggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcacacgttc 8743684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 36737521 - 36737426
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 116  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||   ||||| |||||||||||||||||||| ||||||||||||||||    
T  36737521 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggac--caagaaagaagctcctgaaccaaggtcagttcgcttaagcgaac 36737426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 28369800 - 28369854
Alignment:
Q  225 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28369800 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 28369854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 22180293 - 22180349
Alignment:
Q  94 aaggtccgttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagc 150  Q
    |||||| |||||||||||||| ||   |||||||||||||||| |||| ||||||||    
T  22180293 aaggtcagttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagc 22180349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 4839797 - 4839537
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4839797 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 4839698  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  4839697 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 4839598  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4839597 cctatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 4839537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 5274296 - 5274055
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||| |    
T  5274296 gctttacatgcctgattctacgcaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtttgttcgcttaagcgaaccc 5274197  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||  | | |||||||||||| ||||    
T  5274196 ctgttcgcttaagcaaaccagttacagagagcaaccgttctgttcgcttacaagcacgccttcagttcgctcat-aacaaagctcagttcgcttaagcga 5274098  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccagga 261  Q
     ||||||||||||||||||| | |||||||| |||| ||||||    
T  5274097 cctatggttcgcttaagcgaaccagttccagagagcaccagga 5274055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 46692799 - 46692571
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||| | |||||  ||||| |||||     
T  46692799 gctttacatgcctgattctacccaatttatgcaggaaatgtcaagcaaggaccaaaagaaggaagctcctgaaccaagttacgttcatttaagtgaactt 46692700  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcat-gaagtacgatcagttcgcttacgcg 217  Q
      |||||||||||||||| |||| |||| |||||||| | ||||||||||||||||||| | |||||||||||| |||  | | ||| |||||||| ||     
T  46692699 tggttcgcttaagcgaacaagttccagaaagcaaccagtttgttcgcttacaagcacgccttcagttcgctcatagaa--aagttcaattcgcttaagca 46692602  T
Q  218 aactatggttcgcttaagcgaccaagttcca 248  Q
    | |||| |||||||||||||| |||||||||    
T  46692601 acctattgttcgcttaagcgaacaagttcca 46692571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 55326275 - 55326515
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||| ||||| |||| |||||||||||| |||||||||| |||||||| |||||||||    
T  55326275 gctttacatgcctgattctacccaatttatacaggaaatgacaagcgaggaccaaaacaaggaagctcctaaaccaaggtcagttcgcttgagcgaactc 55326374  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaag-tacgatcagttcgcttacgcg 217  Q
    ||||||||||||||||||||||| |||||||  ||||   |  |||||||| ||||||||| | ||||||||||||||  | | |||||||||||| |||    
T  55326375 ctgttcgcttaagcgaaccagttccagagag-taccagaatagtcgcttactagcacgctttctgttcgctcatgaagaaaagttcagttcgcttaagcg 55326473  T
Q  218 aactatggttcgcttaagcgaccaagttccagtgagctccag 259  Q
    | ||   |||||||||||||| | ||||||||  ||||||||    
T  55326474 acctcatgttcgcttaagcgatccagttccagaaagctccag 55326515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 42533606 - 42533436
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||||||||||||| ||  ||||||||||||| |||||| |||||| ||||||||||||||| ||| |||||||| ||| |||||||||||| |    
T  42533606 gctttacatgcctgattctatccattttatgcaggaaatgacaagtaaggaccaaaagaaggaagctcatgagccaaggtcagtttgcttaagcgaaccc 42533507  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgct 189  Q
    |||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||| ||  |||||||||    
T  42533506 ctgttcgcttaagcgaacaagttccagagagcaaccagtttgttcgcttacaagcacactctcagttcgct 42533436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 22047319 - 22047442
Alignment:
Q  156 ttctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagct 255  Q
    ||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  22047319 ttctgttcgcttacaagcacgcttccagttcgctcttgaagaaaggtcagttcgcttaagcgacctatggttcgcttaagcgaccaagttccagtgagct 22047418  T
Q  256 ccaggaaagttcgctcacaggttc 279  Q
    ||||||||||||||||||| ||||    
T  22047419 ccaggaaagttcgctcacatgttc 22047442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 5274111 - 5273932
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||||| |     | ||||||||| |||||||||||||||||||||||||| |      
T  5274111 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagagcaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 5274012  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    | ||| |||||||| |||| ||| ||||||||||||||| | |||||||| |||||||||||||||||||||||| ||||    
T  5274011 ggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttccagagagctccaggaaagttcgctcacacgttc 5273932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 102 - 258
Target Start/End: Complemental strand, 46692613 - 46692457
Alignment:
Q  102 ttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacga 201  Q
    ||||||||||| | ||  ||||||||||||||||| |||| || |||||||||| ||||||||||||||||||| | | ||||||||||||||   | |     
T  46692613 ttcgcttaagcaacctattgttcgcttaagcgaacaagttccaaagagcaaccagtctgttcgcttacaagcacaccttcagttcgctcatgagaaaagt 46692514  T
Q  202 tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctcca 258  Q
    |||||||| ||| |||| |||| |||||||||||||| |||||||||| ||||||||    
T  46692513 tcagttcgtttaagcgacctattgttcgcttaagcgaacaagttccagagagctcca 46692457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 44432686 - 44432556
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||||||   ||||| ||| |||||||||||||    | |||||||||||| |||    
T  44432686 gctttacatgtctgattctacccaatttatgcaggatacgacaagcaaggac--caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctc 44432589  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||||||| | |||||||||    
T  44432588 ctgttcgcttaagcgaaccagctccagagagca 44432556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 22047248 - 22047316
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcc 87  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||    
T  22047248 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcc 22047316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 42533348 - 42533299
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagc 150  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  42533348 gttcgcttaagcgacctcctgttcgcttaagcgaacaagttccagagagc 42533299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 42533442 - 42533392
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca 151  Q
    |||||||||||||| ||  |||||||||||||||||||||| |||||||||    
T  42533442 gttcgcttaagcgacctattgttcgcttaagcgaaccagttccagagagca 42533392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 42533445 - 42533368
Alignment:
Q  202 tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||| |||| |||| |||||||||||||| | |||||||| |||| |||| |  ||||||||||| ||||    
T  42533445 tcagttcgcttaagcgacctattgttcgcttaagcgaaccagttccagagagcaccagaattgttcgctcacaagttc 42533368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 1066 - 1326
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1066 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 1165  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  1166 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaagatcagttcgcttaagcga 1265  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1266 cctacgattcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 1326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 7653875 - 7653621
Alignment:
Q  25 catgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttc 124  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653875 catgcctgattctacccaatttatgcaggaaatgacaagaaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttc 7653776  T
Q  125 gcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactatg 224  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||    
T  7653775 gcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcgaactatg 7653676  T
Q  225 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7653675 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 7653621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 3587901 - 3588161
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3587901 gctttacatgcctgattctacccaatttatgcaggaaatgacaagtaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 3588000  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  3588001 ctgttcgcttaagcgaaccaattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 3588100  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3588101 cctatggttcacttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 3588161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 27031447 - 27031218
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  27031447 gctttacatgcctgattctacccaatttatgcaagaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggcctgttcgcttaagcgaactc 27031348  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||| |  | | || ||||||||| ||||    
T  27031347 ctgttcgcttaagcgaaccagttacagagagcaaccgttctattcgcttacaagcacgccttcagttcgctcatg-acaaagctctgttcgcttaagcga 27031249  T
Q  219 actatggttcgcttaagcgaccaagttccag 249  Q
     ||||||||||||||||||| | ||||||||    
T  27031248 cctatggttcgcttaagcgaaccagttccag 27031218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 8615025 - 8615265
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||                  
T  8615025 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaggaaggaagcttctgaaccaaggtccgttc-------------- 8615110  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
          |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  8615111 ------gcttaagcgaacctattacagagagcaaccgttctgttcgcttacaagcacgcttccagttcgctcatgaagaaagatcagttcgcttaagcga 8615204  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8615205 cctacgattcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 8615265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 279
Target Start/End: Complemental strand, 4755515 - 4755259
Alignment:
Q  22 ttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctg 121  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||| || || |||||||||||| |||||||||||||||| ||||    
T  4755515 ttacatgcctgattctacccaatttatgcaggaaatgacaagcaaagaccaaaagaagggagatcttgaaccaaggtcagttcgcttaagcgaacccctg 4755416  T
Q  122 ttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaact 221  Q
    |||||||||||||||| ||||||||||||| |   |  |||||||||| |||||||||||||||||||||||||| | |  ||||||||||| |||| ||    
T  4755415 ttcgcttaagcgaacctgttacagagagcaccggattagttcgcttactagcacgcttccagttcgctcatgaagaaaggccagttcgcttaagcgacct 4755316  T
Q  222 atggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
       |||||||||||||| | |||||||| |||||||||| ||||||||||||| ||||    
T  4755315 caagttcgcttaagcgaaccagttccagagagctccagg-aagttcgctcacaagttc 4755259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 36470089 - 36469873
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||||| ||||||| || |||||||||||||||   |||||||||||||||| |    
T  36470089 gctttacatgcctgattctacca-atttatgcaggaaatgacaagcaaggaccaaaagaatgatgctcctgaaccaaggggagttcgcttaagcgaac-c 36469992  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    | || |||||||||| ||||||| ||| |||| ||||  | ||||||||||||| ||||| ||||  ||||||||||  |  | ||||||||||| |||     
T  36469991 ccgtacgcttaagcgtaccagttccagtgagc-accagccagttcgcttacaagtacgctcccaggacgctcatgaaaaatcaacagttcgcttaagcgt 36469893  T
Q  219 actatggttcgcttaagcga 238  Q
    || || ||||||||||||||    
T  36469892 accatagttcgcttaagcga 36469873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 52045543 - 52045446
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 116  Q
    |||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||    
T  52045543 gctttacatgcctgattctagccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagcttctgaaccaaggtccgttcgcttaagtgaac 52045446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 27031262 - 27031083
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacg 200  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||| || |     | ||||||||| |||||||||||||||||||||||||| |      
T  27031262 gttcgcttaagcgacctatggttcgcttaagcgaaccagttccagagaacaccaggattcttcgcttactagcacgcttccagttcgctcatgaagaaaa 27031163  T
Q  201 a-tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
      ||| |||||||| |||| ||||||||||||||||||| | |||| ||| |||||||||||||||||||||||| ||||    
T  27031162 tgtcatttcgcttaagcgacctatggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcacacgttc 27031083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 52308653 - 52308523
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||   ||||| ||| |||||||||||||    | |||||||||||| ||     
T  52308653 gctttacatgtctgattctacccaatttatgcaggaaacgacaagcaaggac--caagaaagaacctcctgaaccaagagatggtcgcttaagcgacctt 52308556  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||||||| | |||||||||    
T  52308555 ctgttcgcttaagcgaaccagatccagagagca 52308523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 10386710 - 10386597
Alignment:
Q  36 ctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcctgttcgcttaagcgaa 135  Q
    |||||| |||||||||||||||||||||||||||| ||  ||| |||  ||||||||||||    | |||||||||||| ||||||||||||||||||||    
T  10386710 ctacccaatttatgcaggaaacgacaagcaaggaccaa--gaaagaacttcctgaaccaagagatggtcgcttaagcgacctcctgttcgcttaagcgaa 10386613  T
Q  136 ccagttacagagagca 151  Q
    |||| | |||||||||    
T  10386612 ccagctccagagagca 10386597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 52045461 - 52045362
Alignment:
Q  121 gttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaac 220  Q
    ||||||||||| ||||||||| |||||||||||||   ||||||||||||||||||| | ||||||||||||||   | | |||||||||||| ||||||    
T  52045461 gttcgcttaagtgaaccagttccagagagcaaccagcttgttcgcttacaagcacgccttcagttcgctcatgagaaaagttcagttcgcttaagcgaac 52045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 52045377 - 52045323
Alignment:
Q  225 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  52045377 gttcgcttaagcgaacaagttccagagagctccaggaaagttcgctcacaagttc 52045323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 11260458 - 11260392
Alignment:
Q  21 tttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac-gaaaagaaggaagctc 86  Q
    ||||||||  ||||||||||| |||||||||||||| ||||||||| |||  |||||||||||||||    
T  11260458 tttacatgtttgattctacccaatttatgcaggaaatgacaagcaatgacacaaaagaaggaagctc 11260392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 33492850 - 33492595
Alignment:
Q  25 catgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactcct-gtt 123  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  33492850 catgcctgattctacccaatttatgcaggaaatgacaagaaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactgggagtt 33492751  T
Q  124 cgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaactat 223  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||| |||||||||    
T  33492750 cgattaagcgaaccaattacagagagcaaccattctgttcgcttacaagcacacttccagttcgctcatgaagaaaggtcagttcgcttaagcgaactat 33492651  T
Q  224 ggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33492650 ggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacatgttc 33492595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 38122697 - 38122463
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |    
T  38122697 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaaccc 38122598  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||| | ||||||||||||| |  | | |||||||||||| ||||    
T  38122597 ctgttcgcttaagcgaaccagttacagagagcaactgttctattcgcttacaagcacgccttcagttcgctcatg-acaaagctcagttcgcttaagcga 38122499  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagc 254  Q
     ||||||||||||||||||| |||||||||| ||||    
T  38122498 cctatggttcgcttaagcgaacaagttccagagagc 38122463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 12168836 - 12168637
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12168836 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 12168737  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    ||||||  |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  12168736 ctgttcaattaagcgaactaattacagagagcaaccattatgttcgcttacaagcacgcttccagttcgctcatgaagaaaggtcagttcgcttaagcga 12168637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 16833410 - 16833150
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    |||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| | |||||||||| ||| |    
T  16833410 gctttacatgcctgattctatccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaggctcctgaaccaaggtcagctcgcttaagcaaaccc 16833311  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcga 218  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||| ||||||||||||| | | ||||||||||||   |   |||||||||||| ||||    
T  16833310 ctgttcgcttaagcgaaccagttccagagagcaaccatcatgttctcttacaagcacgccttcggttcgctcatgagaaaaattcagttcgcttaagcga 16833211  T
Q  219 actatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
     ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||||    
T  16833210 cctatggttcgcttaagcgaacaagttccagagagctccaggaaatttcgctcacatgttc 16833150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 13218695 - 13218435
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |    
T  13218695 gctttacatgcctgattctacccaatttatgcaggaaatgataagcaagaaccaaaagaaggaagctcctgaaccaaggtcagttcgcttaagcgaaccc 13218596  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattct-gttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcg 217  Q
     ||||| ||||||||||| |||| |||||||| ||||   | |||| ||||| |||||||||| ||||||||||||||| | |  ||||||||||| |||    
T  13218595 ttgttctcttaagcgaacaagttccagagagc-accagaatggttcacttactagcacgcttctagttcgctcatgaagaaaggccagttcgcttaagcg 13218497  T
Q  218 aactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    | ||   |||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||    
T  13218496 acctcatgttcgcttaagcgaacaagttccagagagcttcaggaaagttcgctcacaagttc 13218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 38122512 - 38122333
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagca--accattctgttcgcttacaagcacgcttccagttcgctcatgaagta 198  Q
    |||||||||||||| ||   |||||||||||||||| |||| |||||||||  |  |||||  |||||||| |||||||||||||||||||||||||| |    
T  38122512 gttcgcttaagcgacctatggttcgcttaagcgaacaagttccagagagcacaaggattct--tcgcttactagcacgcttccagttcgctcatgaagaa 38122415  T
Q  199 c-gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
      | ||| |||||||| |||| ||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||| ||||    
T  38122414 aaggtcatttcgcttaagcgacctacggttcgcttaagcgaaccagttacagagagctccaggaaagttcgctcacacgttc 38122333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 12168650 - 12168596
Alignment:
Q  225 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  12168650 gttcgcttaagcgacaaagttccagtgagctccaggaaagttcgctcacatgttc 12168596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 13829705 - 13829756
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggac 70  Q
    ||||||||||||||||||||| | |||| ||||||||| |||||||||||||    
T  13829705 gctttacatgcctgattctactcaatttgtgcaggaaatgacaagcaaggac 13829756  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 21717856 - 21717901
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacaga 146  Q
    |||||||||||||| ||| ||||||||||||||||| |||| ||||    
T  21717856 gttcgcttaagcgacctcatgttcgcttaagcgaacaagttccaga 21717901  T

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Target: scaffold0015 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 185304 - 185498
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  185304 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaagggccgttcgcttaagcaaactc 185403  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgctta 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||    
T  185404 ctgttcgcttaagcgaaccagttacagagagcaaccgttctgttcgcttacaaacacgcttccagttcgctcatgaagaaaggtcagttcgctta 185498  T

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Target: scaffold0015; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 174146 - 174224
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaagg 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  174146 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaagg 174224  T

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Target: scaffold0002 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 354400 - 354282
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |    
T  354400 gctttacatgcctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaagctcctgaaccaaggtctgttcgcttaagcgaaccc 354301  T
Q  119 ctgttcgcttaagcgaacc 137  Q
    |||||||||||||||||||    
T  354300 ctgttcgcttaagcgaacc 354282  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 8684100 - 8683964
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||| ||| |    
T  8684100 gctttacatacctgattctacccaatttatgcaggaaatgacaagcaaggaccaaaagaaggaggctcctgaaccaaggtcagtttgcttaagccaaccc 8684001  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaacca 155  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8684000 ctgttcgcttaagcgaaccagttccagagagcaacca 8683964  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 32522487 - 32522619
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||| || |||||||||||| |||| ||||||| |||||||||||||| |||    
T  32522487 gctttacatgcctgattctacccaatttacgcaggaaatgacaagcaaggaccaatagaaggaagctcatgaatcaaggtcagttcgcttaagcgacctc 32522586  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    |||||||||||||||||| ||||  ||||||||    
T  32522587 ctgttcgcttaagcgaacaagttctagagagca 32522619  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 29223215 - 29223345
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||| |||  ||||||||||||    | |||||||||||| |||    
T  29223215 gctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaggac--caagaaagaacttcctgaaccaagagatggtcgcttaagcgacctc 29223312  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||||||| | |||||||||    
T  29223313 ctgttcgcttaagcgaaccagctccagagagca 29223345  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 29336514 - 29336644
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||| |||  ||||||||||||    | |||||||||||| |||    
T  29336514 gctttacatgcctgattctacccaatttatgcaggaaacgacaagcaaggac--caagaaagaacttcctgaaccaagagatggtcgcttaagcgacctc 29336611  T
Q  119 ctgttcgcttaagcgaaccagttacagagagca 151  Q
    ||||||||||||||||||||| | |||||||||    
T  29336612 ctgttcgcttaagcgaaccagctccagagagca 29336644  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 8688139 - 8688062
Alignment:
Q  202 tcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    |||||| ||||| |||| | ||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  8688139 tcagtttgcttaagcgaccaatggttcgcttaagcgaacaagttccagagagctctaggaaagttcgctcacaagttc 8688062  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 270798 - 270843
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacaga 146  Q
    |||||||||||||| ||| ||||||||||||||||| |||| ||||    
T  270798 gttcgcttaagcgacctcatgttcgcttaagcgaacgagttccaga 270843  T

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Target: scaffold0014 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 79919 - 79744
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||||||||| ||| |||||||||| |||| |||||||||||| |||||||||||| ||| |    
T  79919 gctttacatgccttattctacccaatttatgtaggaaatgacaagcaaagaccaaaagaaggaggctcttgaaccaaggtcggttcgcttaagcaaaccc 79820  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatga 194  Q
    || || | ||||| ||||||||| |||||||||||||  |||||||||||||||||||| | | ||||||||||||    
T  79819 ctatttggttaagtgaaccagttccagagagcaaccagcctgttcgcttacaagcacgccttcggttcgctcatga 79744  T

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Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 76881 - 76836
Alignment:
Q  225 gttcgcttaagcgaccaagttccagtgagctccaggaaagttcgct 270  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||    
T  76881 gttcgcttaagcgaacaagttccagagagctccaggaaagttcgct 76836  T

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Target: scaffold0059 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 17133 - 16960
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaactc 118  Q
    ||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| ||  ||| ||||||||||| |||| ||  |||||||||||||| |||    
T  17133 gctttacgtgcttgattctacccaatttatgcaggaaatgacaagcaaggaccaa--gaaagaagctcctgagccaaagtttgttcgcttaagcgacctc 17036  T
Q  119 ctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaa 195  Q
      | ||||||||||||||||||| ||| ||||||||  ||||||||||||||||||||||||| |||||||||||||    
T  17035 a-gctcgcttaagcgaaccagttccagggagcaacccatctgttcgcttacaagcacgcttcctgttcgctcatgaa 16960  T

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Target: scaffold0019 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 117291 - 117194
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcgaac 116  Q
    |||||||||| |||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  117291 gctttacatgtctgattctacccaatttatgcaggaaatgacaaacaaggaccaaaagaaggaagctcatgaaccaaggtccgttcgcttaagcgaac 117194  T

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Target: scaffold0019; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 254
Target Start/End: Complemental strand, 117209 - 117076
Alignment:
Q  121 gttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtacgatcagttcgcttacgcgaac 220  Q
    |||||||||||||||| |||| ||||||||||||| | |||||||| |||||||| ||  ||||||||||||||   | | |  ||||||||| |||| |    
T  117209 gttcgcttaagcgaacaagttccagagagcaaccaatatgttcgctgacaagcacactctcagttcgctcatgagaaaagttatgttcgcttaagcgacc 117110  T
Q  221 tatggttcgcttaagcgaccaagttccagtgagc 254  Q
    ||| ||| |||||||||| | |||||||| ||||    
T  117109 tattgtttgcttaagcgaaccagttccagagagc 117076  T

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Target: scaffold0019; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 117125 - 116947
Alignment:
Q  101 gttcgcttaagcgaactcctgttcgcttaagcgaaccagttacagagagcaaccattctgttcgcttacaagcacgcttccagttcgctcatgaagtac- 199  Q
    |||||||||||||| ||  |||| ||||||||||||||||| ||||||||  |||   ||||||||||| || |||||| ||||| |||| ||||| |      
T  117125 gttcgcttaagcgacctattgtttgcttaagcgaaccagttccagagagcc-ccaaaatgttcgcttaccagtacgctttcagtttgctcctgaagaaaa 117027  T
Q  200 gatcagttcgcttacgcgaactatggttcgcttaagcgaccaagttccagtgagctccaggaaagttcgctcacaggttc 279  Q
    | |||||||||||| |||| || | |||||||||||| | |||||| ||  ||||||||| |  ||||||||||| ||||    
T  117026 gttcagttcgcttaagcgacctcttgttcgcttaagcaaacaagtttcaaagagctccagaattgttcgctcacaagttc 116947  T

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Target: scaffold0744 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 1958 - 2050
Alignment:
Q  19 gctttacatgcctgattctaccccatttatgcaggaaacgacaagcaaggacgaaaagaaggaagctcctgaaccaaggtccgttcgcttaagcg 113  Q
    |||||||||||||||||    ||| ||||||||||||| ||||||||||||  | ||||| ||||||| |||||||| ||| || ||||||||||    
T  1958 gctttacatgcctgatttcctcccttttatgcaggaaatgacaagcaagga--acaagaaagaagctcatgaaccaaagtcagtacgcttaagcg 2050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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