View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_51 (Length: 266)
Name: NF14445_low_51
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 16109216 - 16108965
Alignment:
| Q |
14 |
caaataacaaggaaatgcagtgtttcaactggtttttgcaacgactgtgcatcggcttgcaattcagaatgtggtaatcgatactatgcagggatagggt |
113 |
Q |
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| T |
16109216 |
caaataaaaaggaaatgcagtgtttcaactggtttttgcaacgacggtgcatcggcttgcaattcagaatgtggtaatcgatactatgcagggatagggt |
16109117 |
T |
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| Q |
114 |
attgtgatggtagtatttacccacaaattgctatttgttactgtcaatatgtttgttaactcgtttatttccccatatctaatgggatcattgatatatt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16109116 |
attgtgatggtagtatttacccacaaattgctatttgttactgccaatatgtttgttaactcgtttatttccccatatctaatgggatcattgatgtatt |
16109017 |
T |
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| Q |
214 |
ttagtgcatcgcctattttgaattaagaaatatttcattatatcaatgaaat |
265 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
16109016 |
ttagtgcatcacctattttgaattaagaaatatttcattatattattgaaat |
16108965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 16326402 - 16326653
Alignment:
| Q |
14 |
caaataacaaggaaatgcagtgtttcaactggtttttgcaacgactgtgcatcggcttgcaattcagaatgtggtaatcgatactatgcagggatagggt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16326402 |
caaataacaaggaaatgcagtgtttcaactggtttttgcaacgacggtgcatcggcttgcaattcagaatgtggtaatcgatactatgcagggatagggt |
16326501 |
T |
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| Q |
114 |
attgtgatggtagtatttacccacaaattgctatttgttactgtcaatatgtttgttaactcgtttatttccccatatctaatgggatcattgatatatt |
213 |
Q |
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| T |
16326502 |
attgtgatggtagtatttacccacaaattcctatttgttactgccaatatgtttgttaactcgtttatttccccatatctcatgggatcattgatgtatt |
16326601 |
T |
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| Q |
214 |
ttagtgcatcgcctattttgaattaagaaatatttcattatatcaatgaaat |
265 |
Q |
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| T |
16326602 |
tgagtacatcacttattttgaattaagaaatatttcatcatatcgatgaaat |
16326653 |
T |
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