View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_52 (Length: 263)
Name: NF14445_low_52
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 41 - 245
Target Start/End: Complemental strand, 449885 - 449682
Alignment:
| Q |
41 |
tttccgtgaaatgcttggctgaagataagtatttgtataactatacattggttgttgattctgaaactgtcaaagatataatgcatggatgagaagctat |
140 |
Q |
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| T |
449885 |
tttccgtgaaatgcttggctaaagataagtatttgtataactatacattggttgttgattgtgaaactgtcaaagatataatgcatggatgagaagctat |
449786 |
T |
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| Q |
141 |
aatgaagtctggataagaggaagcatatgttgattatctttgtttgtttaaaactgtatgtgaaaactttataaaaaattttgaaatatgtggaaggtac |
240 |
Q |
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| T |
449785 |
aatgaagtctggataagaggaagcatatgttgattatctttctttgtttaaaactgtatgtgaaaactttata-aaaattttgaaatatgtggaaggtac |
449687 |
T |
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| Q |
241 |
tatat |
245 |
Q |
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||||| |
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| T |
449686 |
tatat |
449682 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 34620191 - 34620137
Alignment:
| Q |
47 |
tgaaatgcttggctgaagataagtatttgtataactatacattggttgttgattc |
101 |
Q |
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|||||||||||| ||||||||||||| | |||||||||| |||| || ||||||| |
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| T |
34620191 |
tgaaatgcttggttgaagataagtatgtttataactatagattgctttttgattc |
34620137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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