View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_57 (Length: 250)
Name: NF14445_low_57
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 44098224 - 44098428
Alignment:
| Q |
34 |
agacgaccaaagactgcaagctaaagatgatgaactcttatctcaaatacgggccaaaaggaacttcatattactaag-aaatatctcaaggattatgtg |
132 |
Q |
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| T |
44098224 |
agacgaccaaggactgcaagcttaagatgatgaactcttatctcaaatacgggccaaaaggaacatagtaaaatcatccaaatatctcaaggattatgtg |
44098323 |
T |
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| Q |
133 |
gtaccaaagaagaaagccaacttaaatctaaaagttacctctgctagccgagtcatcatcaatggaaattactaagaaatgtatgtgttagagacataat |
232 |
Q |
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|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
44098324 |
gtaccaaagaagaaagccaacttagatctagaaggtacctctgctagccgagtcatcatcaatgggaattactaagaaatgtatgtgttagagacagaat |
44098423 |
T |
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| Q |
233 |
gtatt |
237 |
Q |
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||||| |
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| T |
44098424 |
gtatt |
44098428 |
T |
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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 48610984 - 48611071
Alignment:
| Q |
150 |
caacttaaatctaaaagttacctctgctagccgagtcatcatcaatggaaattactaagaaatgtatgtgttagagacataatgtatt |
237 |
Q |
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| T |
48610984 |
caacttaaatctaaaagttacctttgctagctgagtcatcatcgatggaaattactaagaaatgtatgtgttagagacataatgtatt |
48611071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 48610920 - 48610986
Alignment:
| Q |
13 |
attcttaaaggggcatgcgatagacgaccaaagactgcaagctaaagatgatgaactcttatctcaa |
79 |
Q |
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| T |
48610920 |
attcttaaaggggcatgcgatagacgaccaaagactacaagctaaagatgatgaactcttatctcaa |
48610986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 43281621 - 43281465
Alignment:
| Q |
34 |
agacgaccaaagactgcaagctaaagatgatgaactcttatctcaaatacgggccaaaaggaacttcatattactaag-aaatatctcaaggattatgtg |
132 |
Q |
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|||||||||| ||||||||||| |||||||||||||||| | |||||| ||||||||||||| | || | | ||||||||||||||||||||| |
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| T |
43281621 |
agacgaccaaggactgcaagctgaagatgatgaactcttgta--aaatacaggccaaaaggaacatagtaaaatcatccaaatatctcaaggattatgtg |
43281524 |
T |
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| Q |
133 |
gtaccaaagaagaaagccaacttaaatctaaaagttacctctgctagccgagtcatcat |
191 |
Q |
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| T |
43281523 |
gtatcaaagaagaaagccaacttagatctaaaaggtacctctgctagctgggtcatcat |
43281465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 6442872 - 6443065
Alignment:
| Q |
50 |
caagctaaagatgatgaactcttatctcaaatacgggccaaaaggaacttcatattactaagaaa-tatctcaaggattatgtggtaccaaagaagaaag |
148 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||| | || | | || |||||||||||||||||| |||||||||||||| |
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| T |
6442872 |
caagctgatgatgatgaactcttatctcaaatacgggccaaaaggaacatagtaaaatcatccaagtatctcaaggattatgtgataccaaagaagaaaa |
6442971 |
T |
|
| Q |
149 |
ccaacttaaatctaaaagttacctctgctagccgagtca-----tcatcaatggaaattactaagaaatgtatgtgttagagacataatgtatt |
237 |
Q |
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||| |||| ||||| ||| |||||||||||| |||||| ||||| ||| |||||||||||||||||| |||||| || | |||||||| |
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| T |
6442972 |
ccagcttagatctagaaggcacctctgctagctgagtcagcatcgcatcagtgggaattactaagaaatgtatctgttagtgatagaatgtatt |
6443065 |
T |
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