View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_58 (Length: 250)

Name: NF14445_low_58
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_58
NF14445_low_58
[»] chr8 (4 HSPs)
chr8 (21-243)||(26890468-26890697)
chr8 (1-68)||(10844589-10844656)
chr8 (1-68)||(22548523-22548590)
chr8 (83-127)||(25307998-25308042)
[»] chr2 (2 HSPs)
chr2 (2-68)||(83123-83189)
chr2 (1-68)||(29804787-29804854)
[»] chr1 (5 HSPs)
chr1 (1-74)||(52250311-52250384)
chr1 (1-68)||(20056790-20056857)
chr1 (1-68)||(50002681-50002748)
chr1 (1-68)||(52250648-52250715)
chr1 (1-68)||(52250985-52251052)
[»] chr7 (2 HSPs)
chr7 (1-68)||(13122479-13122546)
chr7 (1-54)||(35474109-35474162)
[»] chr6 (1 HSPs)
chr6 (1-68)||(20850426-20850493)
[»] chr4 (2 HSPs)
chr4 (1-68)||(44471293-44471360)
chr4 (1-68)||(49998741-49998808)
[»] chr3 (2 HSPs)
chr3 (1-68)||(50347851-50347918)
chr3 (1-63)||(39641042-39641104)
[»] chr5 (1 HSPs)
chr5 (1-69)||(8642007-8642075)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 26890468 - 26890697
Alignment:
Q  21 attcgataataactctatatttgagcgtgtttgatttgaagcaattttagaatgagagtctaaaaagactcgtgttaatttatgtgatcaatcggcaatc 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||     
T  26890468 attcgataataactttatatttgagcgtgtttgatttgaagcaattttaaaatgagagtctgaaaagactcgtgttaatttatgtaatcaatcgacaatt 26890567  T
Q  121 ttaaaagcaattcaaaatgttacagttttgattgatattatgtcaatataaata-------aataaaagtgaatataagtaactctaccatcttttaagg 213  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||| |||||||||||    
T  26890568 ctaaaagcaattcaaaatgttacagttttgattgatattatgtcaatataaataacttcttaaaaaaagtgaatataagtaactctactatcttttaagg 26890667  T
Q  214 gctattaccttttattgatgagtattatat 243  Q
    ||||||||||||||||||||||||||||||    
T  26890668 gctattaccttttattgatgagtattatat 26890697  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10844656 - 10844589
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||| |||||||||||||    
T  10844656 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgacttgaagcaatttt 10844589  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 22548590 - 22548523
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||||||||| | | || |||||| |||| ||| |||||||||    
T  22548590 catcttcttttcggtagctcattccataataactccacagttaagcgtgcttgacttggagcaatttt 22548523  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 25307998 - 25308042
Alignment:
Q  83 aaaagactcgtgttaatttatgtgatcaatcggcaatcttaaaag 127  Q
    |||||||||||||| ||||||| ||||| ||||||||| ||||||    
T  25307998 aaaagactcgtgttgatttatgggatcagtcggcaatcctaaaag 25308042  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 83123 - 83189
Alignment:
Q  2 atcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||| ||||||||||||||||| |||| ||||||| | || ||||||||||||||| | |||||||    
T  83123 atcttttttttggtagctcattccataagaactctacagttaagcgtgtttgatttggaacaatttt 83189  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29804787 - 29804854
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||| |||||||||||||    
T  29804787 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgacttgaagcaatttt 29804854  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52250311 - 52250384
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaattttagaatg 74  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||| ||||||||||||| |||||    
T  52250311 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgacttgaagcaattttggaatg 52250384  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20056857 - 20056790
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || ||||||||||| ||| |||||||||    
T  20056857 catcttcttttcggtagctcattccataagaactccacagttaagcgtgtttgacttggagcaatttt 20056790  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 50002748 - 50002681
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| ||||||||||||  ||| ||||| ||| || ||||||||||| ||| |||||||||    
T  50002748 catcttcttttcggtagctcattctttaagaactccatagttaagcgtgtttgacttggagcaatttt 50002681  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 52250648 - 52250715
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||| |||||||||||||    
T  52250648 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgacttgaagcaatttt 52250715  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 52250985 - 52251052
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||| |||||||||||||    
T  52250985 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgacttgaagcaatttt 52251052  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 13122546 - 13122479
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||||||| |||||||||    
T  13122546 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgatttggagcaatttt 13122479  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35474162 - 35474109
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttga 54  Q
    |||||||||||||||||||||||| |||| ||||| | | || |||||||||||    
T  35474162 catcttctttttggtagctcattccataagaactccacagttaagcgtgtttga 35474109  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 20850426 - 20850493
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||||| | || |||||| |||| ||| |||||||||    
T  20850426 catcttcttttcggtagctcattccataagaactctacagttaagcgtgcttgacttggagcaatttt 20850493  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 44471360 - 44471293
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||||||| |||||||||    
T  44471360 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgatttggagcaatttt 44471293  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 49998741 - 49998808
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    ||||||||||| |||||||||||| |||| ||||| | | || ||||||||||| ||| |||||||||    
T  49998741 catcttcttttcggtagctcattccataagaactccacagttaagcgtgtttgacttggagcaatttt 49998808  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 50347851 - 50347918
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttt 68  Q
    |||||||||||||||||||||||| |||| ||||| | | || |||||| |||| ||| |||||||||    
T  50347851 catcttctttttggtagctcattccataagaactccacagttaagcgtgcttgacttggagcaatttt 50347918  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39641042 - 39641104
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagca 63  Q
    |||||||||||||||||||||||| |||| ||||| | | || ||||||||||| ||| ||||    
T  39641042 catcttctttttggtagctcattccataagaactccacagttaagcgtgtttgacttggagca 39641104  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8642075 - 8642007
Alignment:
Q  1 catcttctttttggtagctcattcgataataactctatatttgagcgtgtttgatttgaagcaatttta 69  Q
    ||||||||||| |||||||||||| |||| ||||| | | || |||||| |||| ||| ||||||||||    
T  8642075 catcttcttttcggtagctcattccataagaactccacagttaagcgtgcttgacttggagcaatttta 8642007  T

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