View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_60 (Length: 240)
Name: NF14445_low_60
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37068028 - 37067804
Alignment:
| Q |
1 |
tctcaaggtacaggaacttcacttggagtttgggagcagacctaaccctatattgccgctaaggctatttagatccgagtcactcgtggtcttaaaattg |
100 |
Q |
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| T |
37068028 |
tctcaaggtacaggaacttcacttggagtttgggagcagacctaaccctatattgccgctaaggctatttagatccgagtcactcgtggtcttaaaatta |
37067929 |
T |
|
| Q |
101 |
cgtggtcatattgaatttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatctcgatttatttaggcttgatttta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37067928 |
cgtggtcatattgaatttcaaccaacacttgattcttcttttgatatacatttaccgtcactaaagattcttcatctcgatttatttaggcttgatttta |
37067829 |
T |
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| Q |
201 |
atgaggatcgtagtgagtatgatct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
37067828 |
atgaggatcgtagtgagtatgatct |
37067804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 20279211 - 20279116
Alignment:
| Q |
77 |
gagtcactcgtggtcttaaaattgcgtggtcatattgaatttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatc |
176 |
Q |
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| T |
20279211 |
gagtcactcgtggtcttaaaattgcgggg-ca----gaatt-caaccaacactcaattcttcttttcatgtatatttaccgtcactaaagattcttcatc |
20279118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 20431781 - 20431686
Alignment:
| Q |
77 |
gagtcactcgtggtcttaaaattgcgtggtcatattgaatttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatc |
176 |
Q |
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| T |
20431781 |
gagtcactcgtggtcttaaaattgcgggg-ca----gaatt-caaccaacactcaattcttcttttcatgtatatttaccgtcactaaagattcttcatc |
20431688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 20476758 - 20476697
Alignment:
| Q |
117 |
ttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatctc |
178 |
Q |
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| T |
20476758 |
ttcaaccaacactcaattcctcttttcatgtacatttaccgtcactaaagattcttcatctc |
20476697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 20440480 - 20440388
Alignment:
| Q |
77 |
gagtcactcgtggtcttaaaattgcgtggtcatattgaatttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcat |
175 |
Q |
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| T |
20440480 |
gagtcactcgtggtcttaaaattgcgggg-ca----gaatt-caaccaacactcaattcttcatttcatgtatatttaccgtcactaaagattcttcat |
20440388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 20444048 - 20443987
Alignment:
| Q |
117 |
ttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatctc |
178 |
Q |
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| T |
20444048 |
ttcaaccaacactcaattctgcttttcatgtatatttaccgtcactaaagattcttcatctc |
20443987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 20450921 - 20450860
Alignment:
| Q |
117 |
ttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatctc |
178 |
Q |
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| T |
20450921 |
ttcaaccaaaactcaattcttcttttcatgtatatttaccgtcactaaagattcttcatctc |
20450860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 20462544 - 20462483
Alignment:
| Q |
117 |
ttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatctc |
178 |
Q |
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||||||||||||| ||||||||| || || || ||||||||||||||||||||||||||||| |
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| T |
20462544 |
ttcaaccaacactcaattcttctcttcatgtatatttaccgtcactaaagattcttcatctc |
20462483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 14266910 - 14266971
Alignment:
| Q |
117 |
ttcaaccaacacttaattcttcttttgatatacatttaccgtcactaaagattcttcatctc |
178 |
Q |
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||||||||| ||| |||||||||||||| || ||||||| ||| ||||||||||||||||| |
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| T |
14266910 |
ttcaaccaaaactcgattcttcttttgatgtatatttaccatcattaaagattcttcatctc |
14266971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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