View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_low_61 (Length: 238)

Name: NF14445_low_61
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_low_61
NF14445_low_61
[»] chr4 (2 HSPs)
chr4 (13-238)||(18420965-18421187)
chr4 (13-86)||(11251784-11251857)
[»] chr7 (5 HSPs)
chr7 (177-238)||(17842845-17842908)
chr7 (13-87)||(17151655-17151729)
chr7 (13-87)||(15818166-15818241)
chr7 (38-87)||(16195082-16195132)
chr7 (131-196)||(18083396-18083459)
[»] scaffold0097 (2 HSPs)
scaffold0097 (13-87)||(22589-22663)
scaffold0097 (116-172)||(22687-22743)
[»] chr6 (4 HSPs)
chr6 (13-87)||(19971533-19971607)
chr6 (13-87)||(24216733-24216809)
chr6 (132-238)||(12478647-12478751)
chr6 (114-172)||(24216831-24216889)
[»] chr2 (2 HSPs)
chr2 (13-87)||(20718752-20718826)
chr2 (116-172)||(20718850-20718906)
[»] scaffold0115 (1 HSPs)
scaffold0115 (13-87)||(41698-41772)
[»] chr3 (1 HSPs)
chr3 (30-83)||(25487962-25488015)
[»] scaffold0111 (2 HSPs)
scaffold0111 (116-238)||(28360-28482)
scaffold0111 (18-87)||(28266-28336)
[»] chr5 (1 HSPs)
chr5 (21-87)||(37277475-37277541)
[»] scaffold0613 (1 HSPs)
scaffold0613 (13-86)||(3238-3311)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 18421187 - 18420965
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatcgacnnnnnnnnnnnnntaa-ctcca 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              || ||||     
T  18421187 catcttcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatcgacaaataataaaaaaaaaactcct 18421088  T
Q  112 agagtagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacatactactgagtgatagtctcatcaaacataaaataaatgat 211  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  18421087 -gagtagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacatact---gagtgatagtctcatcaaacataaaataaatgat 18420992  T
Q  212 aaaataccgacatcctaatcagagccc 238  Q
    |||||||||||||||||||||||||||    
T  18420991 aaaataccgacatcctaatcagagccc 18420965  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 11251784 - 11251857
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcat 86  Q
    |||| ||||| ||||||| ||||| ||||||||||||||| ||||| |  |||||||| ||||||||| |||||    
T  11251784 catcttcaataaatccaagacatgcataaataatttttcaaaactcgccgcggaataacatcataacaactcat 11251857  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 17842845 - 17842908
Alignment:
Q  177 tgagtgatagtctcatcaaacat--aaaataaatgataaaataccgacatcctaatcagagccc 238  Q
    ||||||||||||||||||||||   |||||||||||||||| ||||||||| ||||||||||||    
T  17842845 tgagtgatagtctcatcaaacaagaaaaataaatgataaaagaccgacatcataatcagagccc 17842908  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 17151729 - 17151655
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatc 87  Q
    |||| |||||||||||||| |||| ||| ||||||||| | |||||||| ||||| |||||||||||||| ||||    
T  17151729 catcttcaattaatccaaatcatgcatagataattttttataactcacatcggaaaaatatcataacatcacatc 17151655  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 15818241 - 15818166
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataattttt-cacaactcacaacggaataatatcataacatctcatc 87  Q
    |||| |||||||||| |||||||| ||| ||||||||| || |||||||| |||||||||||  ||||||||||||    
T  15818241 catcttcaattaatctaaaacatgcatagataattttttcaaaactcacagcggaataatattgtaacatctcatc 15818166  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 16195082 - 16195132
Alignment:
Q  38 ataaataatttttcacaac-tcacaacggaataatatcataacatctcatc 87  Q
    ||||||||||||||| ||| || ||||||||||||||||||| ||||||||    
T  16195082 ataaataatttttcaaaacatcgcaacggaataatatcataatatctcatc 16195132  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 18083459 - 18083396
Alignment:
Q  131 tatcataatacttcaccaaata-aaatatccaatctcaacatactactgagtgatagtctcatcaaa 196  Q
    ||||||||||| |||||||||| |||| || ||||||||||||||   |||||||| ||||||||||    
T  18083459 tatcataatacatcaccaaatataaatctcaaatctcaacatact---gagtgataatctcatcaaa 18083396  T

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Target: scaffold0097 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 22589 - 22663
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatc 87  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||   |  ||||||||||||||||||||||||    
T  22589 catcttcaattaatccaaaacatgcataattaatttttcaaaacttgaagaggaataatatcataacatctcatc 22663  T

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Target: scaffold0097; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 22687 - 22743
Alignment:
Q  116 tagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacata 172  Q
    ||||||| ||| |||||||||||  |  ||||||||||||| |||||||||||||||    
T  22687 tagccatgtcacatgtatcataacgcaacaccaaataaaatctccaatctcaacata 22743  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 19971607 - 19971533
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatc 87  Q
    |||| |||||||||||||||||||||||| |||||| ||| || || || || ||||| ||||||||||||||||    
T  19971607 catcttcaattaatccaaaacatgtataactaatttgtcaaaattcgcagcgaaataacatcataacatctcatc 19971533  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 24216733 - 24216809
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatt--tttcacaactcacaacggaataatatcataacatctcatc 87  Q
    |||| ||||||||||||||||||| |||| |||||  ||||| ||||| || |||| ||| ||||||||||||||||    
T  24216733 catcttcaattaatccaaaacatgcataattaatttatttcaaaactcgcagcggactaacatcataacatctcatc 24216809  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 12478751 - 12478647
Alignment:
Q  132 atcataatacttcaccaaataaaatatccaatctcaacatactactgagtgatagtctcatcaaacat--aaaataaatgataaaataccgacatcctaa 229  Q
    |||||||||| ||||||||  |||| |||||||||||||   | ||||||||||||||||  | ||||  ||||||||||| | || ||||||| |||||    
T  12478751 atcataatacatcaccaaaataaatctccaatctcaaca---tgctgagtgatagtctcaaaagacatgaaaaataaatgacataagaccgaca-cctaa 12478656  T
Q  230 tcagagccc 238  Q
    |||||||||    
T  12478655 tcagagccc 12478647  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 24216831 - 24216889
Alignment:
Q  114 agtagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacata 172  Q
    ||||| ||| ||||||||| |||||||| | |||||||||||| || ||||||||||||    
T  24216831 agtagtcatgtcatatgtaccataatacataaccaaataaaatctcaaatctcaacata 24216889  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 20718752 - 20718826
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatc 87  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||   |  ||||||||||||||||||||||||    
T  20718752 catcttcaattaatccaaaacatgcataattaatttttcaaaacttgaagaggaataatatcataacatctcatc 20718826  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 20718850 - 20718906
Alignment:
Q  116 tagccatatcatatgtatcataatacttcaccaaataaaatatccaatctcaacata 172  Q
    ||||||| ||| |||||||||||  |  ||||||||||||| |||||||||||||||    
T  20718850 tagccatgtcacatgtatcataacgcaacaccaaataaaatctccaatctcaacata 20718906  T

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Target: scaffold0115 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 41772 - 41698
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatc 87  Q
    |||| ||||||||||||||||||| |||| |  |||| || ||||| || | |||||||||||||||||||||||    
T  41772 catcttcaattaatccaaaacatgcataattttttttccaaaactcgcagcagaataatatcataacatctcatc 41698  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 25488015 - 25487962
Alignment:
Q  30 aaacatgtataaataatttttcacaactcacaacggaataatatcataacatct 83  Q
    ||||||| ||||||||||||||| || |  ||||||||||||||||||||||||    
T  25488015 aaacatgaataaataatttttcaaaatttgcaacggaataatatcataacatct 25487962  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 238
Target Start/End: Original strand, 28360 - 28482
Alignment:
Q  116 tagccatatcatatgtatcataatacttcaccaaata-aaatatccaatctcaacatactactgagtgatagtctcatc-aaacat-aaaataaatgata 212  Q
    ||||||| ||| |||||||||||||  |||||||| | |||| || ||||| |||||||||   ||||||| ||||||| |||||| |||||||| || |    
T  28360 tagccatgtcacatgtatcataatatatcaccaaaaataaatctcaaatcttaacatacta---agtgataatctcatcaaaacatgaaaataaacgaca 28456  T
Q  213 aaataccgacatcctaatcagagccc 238  Q
    ||| ||||||| ||| ||||||||||    
T  28457 aaagaccgacaccctgatcagagccc 28482  T

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Target: scaffold0111; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 28266 - 28336
Alignment:
Q  18 tcaattaatccaaaacatgtataaataatttttcacaac-tcacaacggaataatatcataacatctcatc 87  Q
    ||||||||||||||||||| | ||||||||||| | ||| || || |||||||||||||||| || |||||    
T  28266 tcaattaatccaaaacatgcaaaaataattttttaaaacatcgcagcggaataatatcataatatatcatc 28336  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 37277475 - 37277541
Alignment:
Q  21 attaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcatc 87  Q
    ||||||| |||||| | ||||||||||||||| |  ||||| | |||||||||||||| ||||||||    
T  37277475 attaatctaaaacacgcataaataatttttcaaacatcacatcagaataatatcataatatctcatc 37277541  T

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Target: scaffold0613 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 3311 - 3238
Alignment:
Q  13 catcatcaattaatccaaaacatgtataaataatttttcacaactcacaacggaataatatcataacatctcat 86  Q
    |||| ||||||||||||||| ||| |||| |  ||||||| ||||  || ||||||| ||||||||||||||||    
T  3311 catcttcaattaatccaaaatatgcataatttttttttcaaaacttgcagcggaatagtatcataacatctcat 3238  T

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