View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_low_62 (Length: 235)
Name: NF14445_low_62
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 28929658 - 28929498
Alignment:
| Q |
1 |
tgttaatttgttagtatttgttgagttgggagtcgatctcaagaccacccttatcactccacttcttaactctcccaccttagccaatagccgccaa--- |
97 |
Q |
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| T |
28929658 |
tgttaatttgttagtatttgttgaggtgggagtcgatctcaagaccacccttatcactccacttcttaactgtcccaccttagccaatagccgccaagtc |
28929559 |
T |
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| Q |
98 |
-----tatatctaccgatttactaaccttcctacaggaacctaagtgcaatttcacaacat |
153 |
Q |
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| T |
28929558 |
aaccttatatctaccgatttactaaccttcctacaggaacctaagtgcaatttcacaacat |
28929498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 602550 - 602629
Alignment:
| Q |
8 |
ttgttagtatttgtt-gagttgggagtcgatctcaagaccacccttatcactccacttcttaactctcccaccttagcca |
86 |
Q |
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| T |
602550 |
ttgttagtatttgttagaggtgggaattgaatccaagaccacccttatcactccactccttaactctcccaccctagcca |
602629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 28929462 - 28929434
Alignment:
| Q |
189 |
gttcattccataaagttacatgggctaat |
217 |
Q |
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| T |
28929462 |
gttcattccataaagttacatgggctaat |
28929434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 36837776 - 36837804
Alignment:
| Q |
51 |
ttatcactccacttcttaactctcccacc |
79 |
Q |
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| T |
36837776 |
ttatcactccacttcttaactctcccacc |
36837804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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