View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14446_high_12 (Length: 275)
Name: NF14446_high_12
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14446_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 1142494 - 1142750
Alignment:
| Q |
1 |
tttaaaagagaagaataaagattgaggaaacaatacttttgcattgaagtggaacaccaggcaagttacaagcacgaggaagagagatagctaaggttct |
100 |
Q |
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| T |
1142494 |
tttaaaagagaagaataaagattgaggaaacaatacttttgcattgaagtggaacaccaggcaagttacaagcacgaggaagagagatagctaaggttct |
1142593 |
T |
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| Q |
101 |
attgattggtaatgcaaaaggaacattgccagtggcaataagacacatacaatccttgcttccacttgtgagggtcttgattgcattgcagcaatcagca |
200 |
Q |
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| T |
1142594 |
attgattggtaatgcaaaaggaacattgccagtggcaataagacacatacaatccttgcttccacttgtgagggtcttgattgcattgcagcaatcagca |
1142693 |
T |
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| Q |
201 |
gtgggagaggttccattgccactactatttgtgaggaaactcaagcaagggctaatg |
257 |
Q |
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| T |
1142694 |
gtgggagaggttccattgccactactatttgtgaggaaactcaagcaagggctaatg |
1142750 |
T |
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Back To:
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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 46817121 - 46817192
Alignment:
| Q |
38 |
tttgcattgaagtggaacaccaggcaagttacaagcacgaggaagagagatagctaaggttctattgattgg |
109 |
Q |
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||||||||||| |||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
46817121 |
tttgcattgaactggaacaccaggcatgttacaagcacgggggagagagatagccaaggttctattgattgg |
46817192 |
T |
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