View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14446_high_2 (Length: 553)
Name: NF14446_high_2
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14446_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 16 - 538
Target Start/End: Original strand, 34190100 - 34190631
Alignment:
| Q |
16 |
atccacaccctctttcttaaactacgaaacttgtagcatccttttcaacaccaaatcttattacataaaccaaaacatacctttcatgttctcaaacaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34190100 |
atccacaccctctttcttaaactacgaaacttgtagcatccttttcaacaccaaatcttattacataaaccaaaacatacctttcatgttttcaaacaat |
34190199 |
T |
|
| Q |
116 |
tgaaaaccaaacaacaaagaacaatagattcatgtccatatgtacgtttaacagttgaatcattagccctaaaccttccatcaccaacaaaaccatcacc |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34190200 |
tgaaaaccaaacaacaaagaacaatggattcatgtccatatgtacgcttaacagttgaatcattagccctaaaccttccatcaccaacaaaaccatcacc |
34190299 |
T |
|
| Q |
216 |
actttcacgtattcatccttcaacaacaacaataccatgtttttgcaccattcatataccaaatttcccttctcaaaccacacttcttccactc------ |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34190300 |
actttcacgtattcatccttcaacaacaacaataccatgtttttgcaccattcatataccaaatttcccttctcaaaccacacttcttccactctcttca |
34190399 |
T |
|
| Q |
310 |
---tcttcatcatcacctgaaaccaccagctctgctgatggtttccatctcgactccaatgcactccagcgtctcacaggcaaacctatccctctgcgtt |
406 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34190400 |
tcatcttcatcatcacctgaaaccactagctctgctgatggtttccatctcgactccaatgcactccagcgtctcacaggcaaacctatccctctgcgtt |
34190499 |
T |
|
| Q |
407 |
tgtctgtgtacgctggaagcatgggtcaaacttgcggtatagcaaattcgaagcttttaggtcgtgttgttgttaatattgatcttaaaaactctttgtc |
506 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34190500 |
tgtctgtgtacgctggaagcatgggtcgaacttgcggtatagcaaattcgaagcttttaggtcgtgttgttgttaatattgatcttaaaaactctttgtc |
34190599 |
T |
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| Q |
507 |
tcgttcagttatgtttcatagtggatggcttg |
538 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34190600 |
tcgttcagttatgtttcatagtggatggcttg |
34190631 |
T |
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