View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14446_high_3 (Length: 542)
Name: NF14446_high_3
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14446_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 31451502 - 31452027
Alignment:
| Q |
1 |
caacaatggttcgattatcattagggtgttttaaattggggatctgcagaaggatgacattgttcttctgagtat--ttacttctgtccctccattttta |
98 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
31451502 |
caacaatggttcaattatcattagggtgttttaaattggggatctgcaaaaggatgacattgttcttctgaatatatttacttctgtccctccattttta |
31451601 |
T |
|
| Q |
99 |
gttggactgtggggattgtttatttaattatcttatgtacttctttctcttaatgatttttcggttaataaaaaggcatttaaatgaatatttgaaatct |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31451602 |
gttggactgtggggattgtttatttaattatcttatgtacttctttctcttaatgatttttcggttaataaaaaggcatttaaatgaatatttggaatct |
31451701 |
T |
|
| Q |
199 |
gtgtaaaactattcattcatttgctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaacacatgcaagatgccaacgtaa |
298 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31451702 |
gtgtaaaactattcattcattttctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaaaacatgcaagatgccaacgtaa |
31451801 |
T |
|
| Q |
299 |
tgcctgattcacagacttttcgctttttggttggcatttgtgaaacagaagacgatataaataaggtaagttgagttgaataattccatatatccagact |
398 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31451802 |
tgcctgattcacagacttttcgctatttggttggcatttgtgaaacagaagacgatataaataaggtaagttgagttgaataattccatatatccagact |
31451901 |
T |
|
| Q |
399 |
tttaactatttggttctgtagtttttaatcaagtactcctttccctttgtaatctgtaaattttaatgtcgacgtagtctacacgattatacttcttgaa |
498 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31451902 |
tttaactatttggttctgtaggtttgaatcaagtactcctttccctttgtaatctgtaaattttaatgtcgacgtagtctacacgattatacttcttgaa |
31452001 |
T |
|
| Q |
499 |
aatgggtggttcgtgttggtaagtct |
524 |
Q |
| |
|
||||||||||||||||| |||||||| |
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|
| T |
31452002 |
aatgggtggttcgtgttcgtaagtct |
31452027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 31464596 - 31464985
Alignment:
| Q |
5 |
aatggttcgattatcattagggtgttttaaattggggatctgcagaaggatgacattgttcttctgagt--atttacttctgtccc-tccatttttagtt |
101 |
Q |
| |
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|||||||| ||||||||||||| ||||| ||||| |||||||||||||||| |||| |||||| ||||| |||||||| | ||| ||||||||||||| |
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| T |
31464596 |
aatggttcaattatcattagggggttttcaattgcggatctgcagaaggatcacatagttcttttgagtttatttacttttcccccctccatttttagtt |
31464695 |
T |
|
| Q |
102 |
ggactgtggggattgtttatttaattatcttatgtacttctttctcttaatgatttttcggttaataaaaaggcatttaaatgaatatttgaaatctgtg |
201 |
Q |
| |
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| || ||||||||||||||||||||| | || |||||||||||||| |||| || || | ||| |||| |||||||||||||||| || || ||| |
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| T |
31464696 |
tgtatggggggattgtttatttaattatttcatttacttctttctcttgatgaattctcattcaattaaaaagcatttaaatgaatatatggaacatgtt |
31464795 |
T |
|
| Q |
202 |
taaaactattcattcatttgctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaacacatgcaagatgccaacgtaatgc |
301 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||||| | ||||||||| || |||||| |||||||||||||||| ||||| |||| || |
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| T |
31464796 |
taaaataattcattcattttctcaccttttccgaaattgtagaaaaacatcagtggtgccttaagggtcctcaaacacatgcaagaggccaatgtaaagc |
31464895 |
T |
|
| Q |
302 |
ctgattcacagacttttcgctttttggttggcatttgtgaaacagaagacgatataaataaggtaagttgagttgaataattccatatat |
391 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||| |||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
31464896 |
ctgattcacagactttcagctatttgattggcaattgtgaaacaaaagatgatataaatatggtaagttgagtttaataattccatatat |
31464985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 391
Target Start/End: Complemental strand, 55804718 - 55804599
Alignment:
| Q |
272 |
tcaaacacatgcaagatgccaacgtaatgcctgattcacagacttttcgctttttggttggcatttgtgaaacagaagacgatataaataaggtaagttg |
371 |
Q |
| |
|
||||||| |||| |||||||||||||| || |||||| | ||||| ||| |||| ||| | |||||||||| |||| || || || || |||||||| |
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|
| T |
55804718 |
tcaaacaaatgcgagatgccaacgtaaagctcgattcatacactttcagctatttgattgaaaattgtgaaacaaaagaagagattaagaaagtaagttg |
55804619 |
T |
|
| Q |
372 |
agttgaataattccatatat |
391 |
Q |
| |
|
|||| ||||||| ||||||| |
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| T |
55804618 |
agtttaataatttcatatat |
55804599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 391
Target Start/End: Original strand, 15169607 - 15169822
Alignment:
| Q |
176 |
atttaaatgaatatttgaaatctgtgtaaaactattcattcatttgctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaa |
275 |
Q |
| |
|
|||||||||| | | |||||||| | ||||| ||| ||||| | ||||| |||| ||| | |||||||| | ||| |||||| |||||||| |||| |
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|
| T |
15169607 |
atttaaatgagtgtatgaaatctatttaaaatagttctttcatattctcacttttttcgatattgtagaaaaacatcattggtgggttgagggttctcaa |
15169706 |
T |
|
| Q |
276 |
acacatgcaagatgccaacgtaatgcctgattcacagacttttcgctttttggttggcatttgtgaaacagaagacgatataaataaggtaagttgagtt |
375 |
Q |
| |
|
||| |||| |||||||||| ||| || |||||| | ||||| ||| |||| |||||| |||||||||| |||| || || || || |||||||||||| |
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| T |
15169707 |
acaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagattaaaaaagtaagttgagtt |
15169806 |
T |
|
| Q |
376 |
gaataattccatatat |
391 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
15169807 |
taataatttcatatat |
15169822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 391
Target Start/End: Original strand, 29710724 - 29710860
Alignment:
| Q |
255 |
tggtggattgagggtcatcaaacacatgcaagatgccaacgtaatgcctgattcacagacttttcgctttttggttggcatttgtgaaacagaagacgat |
354 |
Q |
| |
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|||||| |||| ||| ||||||| |||| |||||||||| ||| || |||||| | ||||| ||| |||| ||| | |||||||||| |||| || |
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| T |
29710724 |
tggtgggttgaaggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattgaaaattgtgaaacaaaagaagag |
29710823 |
T |
|
| Q |
355 |
ataaataaggtaagttgagttgaataattccatatat |
391 |
Q |
| |
|
|| || || |||||||||||| ||||||| ||||||| |
|
|
| T |
29710824 |
attaagaaagtaagttgagtttaataatttcatatat |
29710860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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