View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14446_high_8 (Length: 365)
Name: NF14446_high_8
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14446_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 6216010 - 6216335
Alignment:
| Q |
10 |
aagaatatgcatagaacaagaaatttttgtaagaattaagaactctgatcctaagtataaatatttgaaaaaatagttttttacctcatgtcaaatgtgg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216010 |
aagaaaatgcatagaacaagaaatttttgtaagaattaagaactctgatcctaagtataaatatttgaaaaaatagttttttacctcatgtcaaatgtgg |
6216109 |
T |
|
| Q |
110 |
agacttttatactagctatttttcaacaatgttaaagcatttagaatttacttaatacacactattagtacaagaaaattaaaaagttttacacatttca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216110 |
agacttttatactagctatttttcaacaatgttaaaacatttagaatttacttaatacacactattagtacaagaaaattaaaaagtttta--------- |
6216200 |
T |
|
| Q |
210 |
atccacatttcactatccagacatatttcgagctaagtcatgatagacaatagtaaaattcaaaccagaatacaaagtcaacatacgtgactaccatcat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6216201 |
---cacatttcactatccagacatatttcgagctaagtcatgatagacaatagtaaaattcaaaccagaatacaaattcaacatacgtgactaccatcat |
6216297 |
T |
|
| Q |
310 |
gtaaacaaatgtttgctattttctatgaccatggccat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216298 |
gtaaacaaatgtttgctattttctatgaccatggccat |
6216335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University