View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14446_low_1 (Length: 765)
Name: NF14446_low_1
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14446_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 255 - 755
Target Start/End: Complemental strand, 32531550 - 32531057
Alignment:
| Q |
255 |
aagtgtatagagcttgaacttgtaaacagagttcaaatcctctaattgacaatagtaaattgaattaatctctttaattaatcatagtttccatcacccc |
354 |
Q |
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| T |
32531550 |
aagtgtatagagcttgaaattgtaaacagagttcaaatcctctaattgacaatagtaaattgaattaatctctttaattaatcatagtttccatcacccc |
32531451 |
T |
|
| Q |
355 |
aattgttttgttttaaaatttttgcaaccttttgatgtcatacttccaaaatttctcttgttactacttacttgggtattttgaattttttaaaattcag |
454 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
32531450 |
aattgttttgttttaaaatttttgcaaccttttgatttcatacttccaaaatttctcttgttgct-------tgggtattttgaattttttaaaattcag |
32531358 |
T |
|
| Q |
455 |
tgtttgtaattaatcattactgtttgtttacagtctctgtggaagtagcagcagctgcagcagcacagaggagtttgtggagtactgtatcaacaatgct |
554 |
Q |
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| T |
32531357 |
tgtttgtaattaatcattactgtttgtttacagtctctgtggaagtagcagcagctgcagcagcacagaggagtttgtggagtactgtatcaacaatgct |
32531258 |
T |
|
| Q |
555 |
gagtgcttgacaataggagtaaggaagagaagccaaggcaataatggctaccttatcagcaccaggtggcagaagaacttctggcttttggcttagatta |
654 |
Q |
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| T |
32531257 |
gagtgcttgacaataggagtaaggaagagaagccaaggcaataatggctaccttatcagcaccaggtggcagaagaacttctggcttttggcttagatta |
32531158 |
T |
|
| Q |
655 |
tagtttatctgctagtactagtttaagatctcataagaggggaaaatggggaaataaattaaccttgatatttgtattctcatctagtctagtataatct |
754 |
Q |
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| T |
32531157 |
tagtttatctgctagtactagtttaagatctcatacgaggggaaaatggggaaataaattaaccttgatatttgtattctcatctagtctagtataatct |
32531058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 32531815 - 32531578
Alignment:
| Q |
18 |
agttttaactaacatctctcacttttttgtccccttctcctcaaaacaaagataaaggttactgataatgttatggtctgacataggtggaagtggaagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32531815 |
agttttaactaacatctctcacttttttgtccccttctcctcaaaacaaagataaaggttactgataatgttatggtctgacataggtggaagtggaagc |
32531716 |
T |
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| Q |
118 |
acttgtaattcaaggacctaaactggccacagtgatgagccaggtaaagaaattggaggtctctatcctggtacttggccaaaagaagccatcttctttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32531715 |
acttgtaattcaaggacctaaactggccacagtgatgagccaggtaaagaaattggaggtctctatcctggtacttggccaaaagaagccatcttctttc |
32531616 |
T |
|
| Q |
218 |
tttagctggtaagagtcctatcatccaaacacaagcaa |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32531615 |
tttagctggtaagagtcctatcatccaaacacaagcaa |
32531578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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