View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14446_low_10 (Length: 325)
Name: NF14446_low_10
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14446_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 42850536 - 42850223
Alignment:
| Q |
1 |
agacttctcggtcgatctctgatgtggcatgaatttatctcggataaatgggaacaatgacgataatactcacaagtagaagcgacacacaatggttgat |
100 |
Q |
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| T |
42850536 |
agacttctcggtcgatctctgatgtggcatgaatttatctctgataaatgggaacaatgacgataatactcacaagtagaagcgacacacaatggttgat |
42850437 |
T |
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| Q |
101 |
tcacagattcgcataacaacttgtcgatgtttgtgctagtcttgtggaattatatgtgtttggtgttatttgtttgtgataggtt-ttttgacaatgggt |
199 |
Q |
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| T |
42850436 |
tcacagattcgcataacaacttgtcgatgtttgtgctagtcttgtggaattatatgtgtttggtgttatttgtttgtgataggtttttttgacaatgggt |
42850337 |
T |
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| Q |
200 |
tcagtcttcttgtgagagggcttattataaatagtgattcttatgtcatgtgtgatcactaattcatggtagtaatccaattgaagtgctattagtgttc |
299 |
Q |
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| T |
42850336 |
tcagtcttcttgtgaaagggcttattataaatagtgattcttatgtcatgtgtgatcactaattcatggtagtaatccaattgaagtgctattagtgttc |
42850237 |
T |
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| Q |
300 |
caattttcccccct |
313 |
Q |
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|||||||||||||| |
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| T |
42850236 |
caattttcccccct |
42850223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 30941513 - 30941696
Alignment:
| Q |
127 |
atgtttgtgctagtcttgtggaattatatgtgtttggtgttatttgtttgtgataggttttttgacaatgggttcagtcttcttgtgagagggcttatta |
226 |
Q |
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| T |
30941513 |
atgtttttgctagtctggcggaattataggtgtttggtgttattggtttgtgatagg--ttttgacattgggttcagtcttcctgtgaaaggacatttta |
30941610 |
T |
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| Q |
227 |
taaatagtgattc-ttatgtcatgtgtgatcactaattcatggtagtaatccaattgaagtgctattagtgttcc-aattttcccc |
310 |
Q |
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| T |
30941611 |
caaatagtgactctttatgtcatgagtgatcactacttcgtggtattaatccaattgcagtgctattggtgttccaaattttcccc |
30941696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 30941117 - 30941156
Alignment:
| Q |
59 |
gacgataatactcacaagtagaagcgacacacaatggttg |
98 |
Q |
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| T |
30941117 |
gacgataatactcacaagtagaagcgacatacaatggttg |
30941156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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