View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14446_low_11 (Length: 315)

Name: NF14446_low_11
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14446_low_11
NF14446_low_11
[»] chr4 (1 HSPs)
chr4 (1-300)||(1636579-1636878)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 1636579 - 1636878
Alignment:
Q  1 aatttttacttacaacacatctaaaattaactgaaaaaacaagggctttttataagttcattgatatgttaacaaacaactgtgtgctgtttttatttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1636579 aatttttacttacaacacatctaaaattaactgaaaaaacaagggctttttataagttcattgatatgttaacaaacaactgtgtgctgtttttatttct 1636678  T
Q  101 ttgtttaagggctagagatggattgatacaccaaaactaactccacttaatttttgtaagtgagaaacgatattaagaaataactcagttgcaaaatttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1636679 ttgtttaagggctagagatggattgatacaccaaaactaactccacttaatttttgtaagtgagaaacgatattaagaaataactcagttgcaaaatttg 1636778  T
Q  201 acatgatggagctggaccgagactcaatggaataataagtgagaaaatttgcttacaattcaattcttgtactcttcctttggcttgttactcatgtaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1636779 acatgatggagctggaccgagactcaatggaataataagtgagaaaatttgcttacaattcaattcttgtactcttcctttggcttgttactcatgtaat 1636878  T

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