View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14446_low_12 (Length: 301)

Name: NF14446_low_12
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14446_low_12
NF14446_low_12
[»] chr6 (4 HSPs)
chr6 (77-200)||(25522644-25522767)
chr6 (101-205)||(24141181-24141285)
chr6 (215-271)||(32007677-32007733)
chr6 (18-62)||(25522565-25522609)
[»] chr5 (8 HSPs)
chr5 (77-205)||(42123850-42123978)
chr5 (17-62)||(42124016-42124061)
chr5 (122-204)||(42129236-42129318)
chr5 (122-195)||(34240203-34240276)
chr5 (122-195)||(41713215-41713288)
chr5 (77-195)||(34232415-34232533)
chr5 (231-293)||(42116324-42116386)
chr5 (16-59)||(42129394-42129437)
[»] chr4 (1 HSPs)
chr4 (77-205)||(11118495-11118623)
[»] chr2 (2 HSPs)
chr2 (77-205)||(32681569-32681693)
chr2 (10-51)||(9423146-9423187)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 25522644 - 25522767
Alignment:
Q  77 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 176  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||    
T  25522644 ttgatcttagtgataatttactggatgatgaaatacctttggttgtttgcaatatcagttcacttgaatttctcaacttgggatacaacaatttgactgg 25522743  T
Q  177 tatcattccacaatgtcttactga 200  Q
    ||||||||||||||||||| ||||    
T  25522744 tatcattccacaatgtcttgctga 25522767  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 24141285 - 24141181
Alignment:
Q  101 atggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtcttactga 200  Q
    |||||||||||| ||||| | |||||||||| ||||||||| ||||||| ||||||  ||||||| ||||||| ||||||||||||||||||||| ||||    
T  24141285 atggtgaaatccatttggctatttgcaatatcagttcacttgaatttcttaacttggaatacaacaatttgaccggtatcattccacaatgtctttctga 24141186  T
Q  201 ttcac 205  Q
    |||||    
T  24141185 ttcac 24141181  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 32007733 - 32007677
Alignment:
Q  215 tgaatctttatggtttttgtttcacatgtattgactgtttcataatgaaaaaacaat 271  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  32007733 tgaatctttatggcttttgtttcacatgtattgactgtttcataatgaaacaacaat 32007677  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25522565 - 25522609
Alignment:
Q  18 tttttgaacctctctcaaaacttgttcatgtcaatagatcaatgg 62  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||    
T  25522565 tttttgaacctctctcaaaactatttcatgtcaatagaccaatgg 25522609  T

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Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 42123978 - 42123850
Alignment:
Q  77 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 176  Q
    ||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  42123978 ttgatcttagtcataatttactgaatggtgaaatccctttggcagtttgcaatatgagttcacttcaatttctcaacttgggttacaacgatttgactgg 42123879  T
Q  177 tatcattccacaatgtcttactgattcac 205  Q
    |||||||||||||||| || |||| ||||    
T  42123878 tatcattccacaatgttttgctgaatcac 42123850  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 42124061 - 42124016
Alignment:
Q  17 atttttgaacctctctcaaaacttgttcatgtcaatagatcaatgg 62  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  42124061 atttttgaacctctctcaaaacttgttcacgtcaatagatcaatgg 42124016  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 42129318 - 42129236
Alignment:
Q  122 tttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtcttactgattca 204  Q
    |||||||| |||||||||||||||| |||||||||  | ||||  ||||||| | ||||||||||||||||||| || |||||    
T  42129318 tttgcaatttgagttcacttcaattactcaacttggcacacaatcatttgacagatatcattccacaatgtcttgctaattca 42129236  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 34240203 - 34240276
Alignment:
Q  122 tttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtctt 195  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||| |||| || |||| ||||||||||||||||    
T  34240203 tttgcaatttgagttcccttgaatttctcaacttgggacacaacaatttcacaggtaacattccacaatgtctt 34240276  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 41713215 - 41713288
Alignment:
Q  122 tttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactggtatcattccacaatgtctt 195  Q
    |||||||||||||||||||   |||||||||||||  | ||||| | |||||||||| ||||||||||||||||    
T  41713215 tttgcaatatgagttcactgggatttctcaacttggcaaacaacaaattgactggtaccattccacaatgtctt 41713288  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 34232415 - 34232533
Alignment:
Q  77 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 176  Q
    |||||||||||| ||| |||||||| ||||| ||| |||||    |||||| |||||  ||||||| |||||||||||||    ||||| | ||||| ||    
T  34232415 ttgatcttagttctaacttactggaaggtgatatctctttgtcgatttgcagtatgaaatcacttcgatttctcaacttggcgcacaacaaattgaccgg 34232514  T
Q  177 tatcattccacaatgtctt 195  Q
    |||||||||||||| ||||    
T  34232515 tatcattccacaatatctt 34232533  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 42116386 - 42116324
Alignment:
Q  231 ttgtttcacatgtattgactgtttcataatgaaaaaacaatattccatgtattatgatgatgt 293  Q
    ||||| ||| || ||||||||||||||||||  | ||||||||||||||||||||||| ||||    
T  42116386 ttgttacacgtgcattgactgtttcataatgttacaacaatattccatgtattatgatcatgt 42116324  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 42129437 - 42129394
Alignment:
Q  16 catttttgaacctctctcaaaacttgttcatgtcaatagatcaa 59  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||    
T  42129437 catttttgaacctctctcaaaacatgttcacatcaatagatcaa 42129394  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 11118623 - 11118495
Alignment:
Q  77 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 176  Q
    |||||||||||| |||||||||| ||||||||||||||||||  |||||| |||| ||||||||| ||||| | |||||| || ||||| ||||||||||    
T  11118623 ttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgactgg 11118524  T
Q  177 tatcattccacaatgtcttactgattcac 205  Q
    | ||||||||||||||||| |||| ||||    
T  11118523 tgtcattccacaatgtcttgctgaatcac 11118495  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 32681569 - 32681693
Alignment:
Q  77 ttgatcttagttataatttactggatggtgaaatccctttggttgtttgcaatatgagttcacttcaatttctcaacttgcgatacaactatttgactgg 176  Q
    |||||||||||| ||||   ||||||||||||| ||||||||  ||||||||||||   |||||| |||||||||||||  |||||||||||||||||||    
T  32681569 ttgatcttagttttaatcagctggatggtgaaa-ccctttggcagtttgcaatatg---tcacttgaatttctcaactttagatacaactatttgactgg 32681664  T
Q  177 tatcattccacaatgtcttactgattcac 205  Q
    ||||||||||||| |||||| | ||||||    
T  32681665 tatcattccacaacgtcttattaattcac 32681693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 9423146 - 9423187
Alignment:
Q  10 catcatcatttttgaacctctctcaaaacttgttcatgtcaa 51  Q
    ||||| ||| |||||||||||||||||||||||||| |||||    
T  9423146 catcagcatatttgaacctctctcaaaacttgttcacgtcaa 9423187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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