View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14446_low_14 (Length: 251)
Name: NF14446_low_14
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14446_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 14436162 - 14435940
Alignment:
| Q |
15 |
tacttagaaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgt |
114 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
14436162 |
tacttggaaaatcatattacttgcaaatttctgctactgttcttgaagtggaaaccattgggttgctagaagctatgaagatgacaatctccaatggtgt |
14436063 |
T |
|
| Q |
115 |
gcataatgttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgt |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14436062 |
gcataatgttatatttgaaactgacggtagatccttggtgaatgcactttactctactactactcccctcaatgaatttggagaccttgtggttcaatgt |
14435963 |
T |
|
| Q |
215 |
-aaaatatcttgttaagtaatca |
236 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
14435962 |
aaaaatatcttgttaagtaatca |
14435940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 30927971 - 30928088
Alignment:
| Q |
15 |
tacttagaaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgt |
114 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
30927971 |
tacttggaaaatcatattacatgcaattttctgctact--tcttgaagtggaaactattgggctgctagaagctatgaagatggcaatctccaatggcat |
30928068 |
T |
|
| Q |
115 |
gcataatgttatatttgaaa |
134 |
Q |
| |
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|||||||||| | ||||||| |
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| T |
30928069 |
gcataatgttttttttgaaa |
30928088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 30928091 - 30928201
Alignment:
| Q |
108 |
atggcgtgcataatgttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggt |
207 |
Q |
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||||| ||||||||||||||||||||| ||| ||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||| |||||| | |
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| T |
30928091 |
atggcatgcataatgttatatttgaaactgaaagtagatccttggtgaatacactctagtctactactactcccctcaatgaatttggagatcttgtgat |
30928190 |
T |
|
| Q |
208 |
tcaatgtaaaa |
218 |
Q |
| |
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||||||||||| |
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| T |
30928191 |
tcaatgtaaaa |
30928201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 2333416 - 2333633
Alignment:
| Q |
22 |
aaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgtgcataat |
121 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
2333416 |
aaaatcagattacatgcaaaattctgctactattcttaaggtggaaaccattgggctgctagaagctatggagatggcaatctccaatggcatgcataat |
2333515 |
T |
|
| Q |
122 |
gttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagacc--ttgtggttcaatgt-aaaa |
218 |
Q |
| |
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||||||||||||| |||| |||||||| ||| ||||||||| ||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |||| |
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| T |
2333516 |
gttatatttgaaactgacagtagatccatggagaatgcactctactctactaccactcccctcaatgaatttggagaccttttgtgattcaatgtaaaaa |
2333615 |
T |
|
| Q |
219 |
tatcttgttaagtaatca |
236 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2333616 |
catcttgttaagtaatca |
2333633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 34297766 - 34297544
Alignment:
| Q |
15 |
tacttagaaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||| || | | |||||| | |
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|
| T |
34297766 |
tacttggaaaatcatattacttgcaaatttccgctactgttcttgaagtggaaaccattggatggctagaagaaatgaagatggcagttttcaatggtat |
34297667 |
T |
|
| Q |
115 |
gcataatgttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgt |
214 |
Q |
| |
|
|||| ||||||| ||||||| |||| ||||||| || ||||||||||| ||| |||||||||||| ||||||| |||||| |||| ||||| ||| ||| |
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|
| T |
34297666 |
gcatgatgttatctttgaaactgacagtagatctttagtgaatgcactctacactactactactctcctcaatgaatttgaagactttgtgattcggtgt |
34297567 |
T |
|
| Q |
215 |
-aaaatatcttgttaagtaatca |
236 |
Q |
| |
|
||||||| |||| ||||||||| |
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|
| T |
34297566 |
aaaaatattttgtcaagtaatca |
34297544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 55640946 - 55641141
Alignment:
| Q |
23 |
aaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgtgcataatg |
122 |
Q |
| |
|
|||||| ||||| ||| |||||| |||| ||||||| |||||| ||||||||| |||||||||||||||||||| |||| | |||||| ||||| | | |
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|
| T |
55640946 |
aaatcagattacttgcgaatttccgctattgttcttgaagtgggaaccattggattgctagaagctatgaagatggcaattttcaatggtatgcatgaag |
55641045 |
T |
|
| Q |
123 |
ttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgtaaaa |
218 |
Q |
| |
|
|||||||||||| ||| |||||| || | |||||||| ||| |||||| ||||||| ||||| ||||| | |||||||| |||||||||||| |
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|
| T |
55641046 |
ttatatttgaaacggacaatagatctttagaaaatgcactatacactactaatactcccttcaatgaatttaaaaaccttgtgattcaatgtaaaa |
55641141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 42661309 - 42661503
Alignment:
| Q |
23 |
aaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgtgcataatg |
122 |
Q |
| |
|
|||||| ||||| ||| ||||| |||| ||||||| |||||||||||||||| ||||||||||||| |||||| |||| | |||||| ||||| | | |
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|
| T |
42661309 |
aaatcaaattacttgcgaattttcgctattgttcttgaagtggaaaccattggattgctagaagctataaagatggcaattttcaatggtatgcatgaag |
42661408 |
T |
|
| Q |
123 |
ttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgtaaaa |
218 |
Q |
| |
|
||||||||||| ||| |||||| || || |||||||| ||| |||||||||||||| ||||| ||||| | |||||||| ||| |||||||| |
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|
| T |
42661409 |
ttatatttgaacg-gacactagatctttagtaaatgcactatacactactactactcccttcaatgaatttaaaaaccttgtgattccatgtaaaa |
42661503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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