View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14446_low_9 (Length: 358)

Name: NF14446_low_9
Description: NF14446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14446_low_9
NF14446_low_9
[»] chr8 (23 HSPs)
chr8 (18-350)||(44426256-44426588)
chr8 (293-341)||(2840237-2840285)
chr8 (293-341)||(2844924-2844972)
chr8 (291-339)||(37353390-37353438)
chr8 (137-232)||(27754412-27754507)
chr8 (292-345)||(37153017-37153070)
chr8 (293-341)||(2833474-2833522)
chr8 (160-240)||(11569447-11569527)
chr8 (293-329)||(24558742-24558778)
chr8 (299-339)||(31751706-31751746)
chr8 (193-240)||(27028831-27028878)
chr8 (300-339)||(31118859-31118898)
chr8 (293-339)||(4389824-4389870)
chr8 (293-339)||(8499087-8499133)
chr8 (218-288)||(26215441-26215511)
chr8 (143-240)||(779034-779131)
chr8 (179-280)||(10079079-10079180)
chr8 (179-240)||(28769348-28769409)
chr8 (303-348)||(31891790-31891835)
chr8 (283-320)||(40637437-40637474)
chr8 (301-341)||(2482740-2482780)
chr8 (293-337)||(30665650-30665694)
chr8 (295-331)||(38189195-38189231)
[»] chr4 (24 HSPs)
chr4 (193-280)||(47800583-47800670)
chr4 (236-345)||(39178323-39178431)
chr4 (295-341)||(50466604-50466650)
chr4 (143-240)||(52754600-52754696)
chr4 (302-339)||(54214895-54214932)
chr4 (293-341)||(2987067-2987115)
chr4 (143-215)||(42461276-42461348)
chr4 (301-341)||(50298409-50298449)
chr4 (293-340)||(26883874-26883921)
chr4 (177-240)||(52315204-52315267)
chr4 (254-339)||(6466137-6466220)
chr4 (293-339)||(17823019-17823065)
chr4 (293-339)||(26520373-26520419)
chr4 (293-331)||(30066910-30066948)
chr4 (301-331)||(43824189-43824219)
chr4 (195-240)||(1706622-1706667)
chr4 (183-240)||(25548542-25548599)
chr4 (193-246)||(27721711-27721764)
chr4 (292-337)||(51560414-51560459)
chr4 (307-339)||(19039661-19039693)
chr4 (293-329)||(22573064-22573100)
chr4 (301-341)||(39886725-39886765)
chr4 (294-346)||(45214251-45214303)
chr4 (301-333)||(45516643-45516675)
[»] chr2 (15 HSPs)
chr2 (149-240)||(29316754-29316845)
chr2 (159-233)||(35379005-35379079)
chr2 (290-339)||(28039457-28039506)
chr2 (292-339)||(450014-450061)
chr2 (149-236)||(35378511-35378598)
chr2 (293-339)||(6167426-6167472)
chr2 (293-331)||(18279826-18279864)
chr2 (301-339)||(40158644-40158682)
chr2 (293-339)||(41880646-41880692)
chr2 (302-336)||(44438992-44439026)
chr2 (283-320)||(5599194-5599231)
chr2 (143-319)||(28677632-28677806)
chr2 (150-239)||(40158719-40158808)
chr2 (200-240)||(13056138-13056178)
chr2 (293-337)||(41406955-41406999)
[»] chr1 (25 HSPs)
chr1 (233-339)||(34619448-34619552)
chr1 (292-341)||(4920893-4920942)
chr1 (300-347)||(48064181-48064228)
chr1 (142-239)||(10199380-10199477)
chr1 (160-280)||(27140438-27140558)
chr1 (218-280)||(7028245-7028307)
chr1 (254-339)||(34404932-34405015)
chr1 (159-240)||(6292493-6292574)
chr1 (143-240)||(7136971-7137068)
chr1 (142-238)||(1565507-1565603)
chr1 (291-339)||(10280522-10280570)
chr1 (132-240)||(11639378-11639486)
chr1 (159-210)||(6031463-6031514)
chr1 (301-336)||(10199544-10199579)
chr1 (265-339)||(33527249-33527321)
chr1 (293-339)||(27820484-27820529)
chr1 (149-240)||(28689431-28689524)
chr1 (142-240)||(34290236-34290334)
chr1 (293-339)||(47498987-47499032)
chr1 (300-341)||(1725246-1725287)
chr1 (161-238)||(27963361-27963438)
chr1 (300-333)||(37841884-37841917)
chr1 (212-272)||(2522597-2522657)
chr1 (301-341)||(10082517-10082557)
chr1 (299-331)||(29128433-29128465)
[»] chr3 (20 HSPs)
chr3 (220-288)||(42808924-42808992)
chr3 (292-339)||(37138242-37138289)
chr3 (293-346)||(46886841-46886893)
chr3 (293-344)||(5435707-5435758)
chr3 (221-317)||(2128309-2128403)
chr3 (307-347)||(31762198-31762238)
chr3 (293-341)||(36887401-36887449)
chr3 (143-231)||(54837007-54837095)
chr3 (293-328)||(55113555-55113590)
chr3 (142-240)||(1217772-1217870)
chr3 (142-240)||(39602182-39602280)
chr3 (193-239)||(41633361-41633407)
chr3 (160-234)||(54180770-54180844)
chr3 (301-330)||(19679859-19679888)
chr3 (290-331)||(36587880-36587921)
chr3 (300-336)||(19679456-19679492)
chr3 (143-242)||(21367665-21367765)
chr3 (293-345)||(30956780-30956831)
chr3 (293-345)||(30972592-30972643)
chr3 (188-240)||(44747426-44747478)
[»] chr5 (21 HSPs)
chr5 (217-288)||(465899-465970)
chr5 (147-240)||(2568658-2568751)
chr5 (143-240)||(6587080-6587177)
chr5 (293-341)||(10772022-10772070)
chr5 (301-349)||(41819482-41819530)
chr5 (222-336)||(11054085-11054196)
chr5 (218-288)||(3237045-3237115)
chr5 (293-347)||(8089671-8089725)
chr5 (295-341)||(40731172-40731218)
chr5 (142-240)||(41957423-41957521)
chr5 (177-240)||(41981872-41981935)
chr5 (301-339)||(6593180-6593218)
chr5 (301-339)||(30291141-30291179)
chr5 (301-330)||(5390203-5390232)
chr5 (298-331)||(8089026-8089059)
chr5 (302-339)||(29845050-29845087)
chr5 (175-239)||(4014429-4014493)
chr5 (307-339)||(5559610-5559642)
chr5 (149-241)||(11707054-11707146)
chr5 (159-239)||(17258872-17258952)
chr5 (291-339)||(38105005-38105053)
[»] chr6 (7 HSPs)
chr6 (160-304)||(32386096-32386238)
chr6 (292-339)||(20368315-20368362)
chr6 (146-240)||(31624090-31624184)
chr6 (149-239)||(33089507-33089597)
chr6 (301-346)||(10657125-10657170)
chr6 (293-342)||(12110989-12111038)
chr6 (192-240)||(31812035-31812083)
[»] chr7 (20 HSPs)
chr7 (292-339)||(31002945-31002992)
chr7 (274-337)||(32156891-32156954)
chr7 (290-328)||(38600420-38600458)
chr7 (174-215)||(6824945-6824986)
chr7 (160-280)||(18749807-18749927)
chr7 (303-339)||(32791904-32791940)
chr7 (300-331)||(7612347-7612378)
chr7 (233-331)||(12110264-12110360)
chr7 (293-339)||(425965-426011)
chr7 (301-339)||(25595986-25596024)
chr7 (300-330)||(30535468-30535498)
chr7 (293-339)||(46945775-46945821)
chr7 (293-339)||(48131229-48131275)
chr7 (147-240)||(9038112-9038204)
chr7 (195-240)||(44821959-44822004)
chr7 (178-234)||(7244686-7244742)
chr7 (274-329)||(7644393-7644446)
chr7 (283-331)||(42656403-42656451)
chr7 (300-336)||(47302822-47302858)
chr7 (150-238)||(47510131-47510219)
[»] scaffold0050 (1 HSPs)
scaffold0050 (295-343)||(58471-58518)
[»] scaffold0024 (1 HSPs)
scaffold0024 (218-262)||(21333-21377)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 44426256 - 44426588
Alignment:
Q  18 aagggggccactgaaacaacaacaaaatgcaatcaatcagagaaaacgtggaaaactgaaccacaagctcacaaaggagctgtttgaattggtttatttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44426256 aagggggccactgaaacaacaacaaaatgcaatcaatcagagaaaacgtggaaaactgaaccacaagctcactaaggagctgtttgaattggtttatttg 44426355  T
Q  118 aatttatctatgcatttttagacaatttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccaca 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44426356 aatttatctatgcatttttagacaatttggaagaacttataaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccaca 44426455  T
Q  218 atagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44426456 atagcttatgaaaacagcttatacaaaaacggattaactttattttgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgca 44426555  T
Q  318 aattaagttgtttacccaaacatgacctaatat 350  Q
    |||||||||||||||||||||||||||||||||    
T  44426556 aattaagttgtttacccaaacatgacctaatat 44426588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 2840285 - 2840237
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  2840285 ataagcacttatgctataagctgcaaaataagttgtttatacaaacatg 2840237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 2844972 - 2844924
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  2844972 ataagcacttatgctataagctgcaaaataagttgtttatacaaacatg 2844924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 37353390 - 37353438
Alignment:
Q  291 tcataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  37353390 tcataagcatttatgctataagctgcaaatcaagttgtttatccaaaca 37353438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 27754507 - 27754412
Alignment:
Q  137 agacaatttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaac 232  Q
    |||| |||||| ||||||||  ||||||| ||| ||| || | ||||||| | || ||||||||||| |||||| |||| ||||||||||||||||    
T  27754507 agactatttgggagaacttatgaaaacagtttatgacatgattataagttgcgttcagcttattttcataagctctccaaaatagcttatgaaaac 27754412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 37153017 - 37153070
Alignment:
Q  292 cataagcacttatgctataagctgcaaattaagttgtttacccaaacatgacct 345  Q
    ||||||| ||||| ||||||| |||||||||||||||| | |||||||||||||    
T  37153017 cataagcgcttatcctataagttgcaaattaagttgttaatccaaacatgacct 37153070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 2833474 - 2833522
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||||||||||||||| ||||  ||||| |||||||||    
T  2833474 ataagcacttatgctataagctgcaaaataagcagtttatccaaacatg 2833522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 11569447 - 11569527
Alignment:
Q  160 aaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||| ||| ||| ||||||||  ||| |||||||||||  || || ||||  |||||||||||||||||||||||    
T  11569447 aaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 24558778 - 24558742
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtt 329  Q
    |||| ||||||||||||||||||||||||||||||||    
T  24558778 ataaacacttatgctataagctgcaaattaagttgtt 24558742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 31751706 - 31751746
Alignment:
Q  299 acttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  31751706 acttatactataagctgcaaattaagttgtttatccaaaca 31751746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 27028878 - 27028831
Alignment:
Q  193 agcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||||| |||||| ||||  |||||||||||||||||||||||    
T  27028878 agcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 31118859 - 31118898
Alignment:
Q  300 cttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  31118859 cttatgctataagctgcacattaagttgtttatccaaaca 31118898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 4389870 - 4389824
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||| |||||||||||||||| |||||| |||| |||||||    
T  4389870 ataagcacttctgctataagctgcaaaataagttatttatccaaaca 4389824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 8499133 - 8499087
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| ||||| ||||||| |||||||||||||||||| |||||||    
T  8499133 ataagcgcttatactataagttgcaaattaagttgtttatccaaaca 8499087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 26215511 - 26215441
Alignment:
Q  218 atagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttat 288  Q
    ||||||||||||||||  |||||| ||||  | ||||||||||||  |||||||| ||||||| |||||||    
T  26215511 atagcttatgaaaacatattatacgaaaatagtttaactttattttatcttttgttatagaaatagcttat 26215441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 779034 - 779131
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||| |||||||||| |||||| |||| ||| ||||||||||||  ||| | |||||||| |||  || ||||  |||| |||||||||||| |||||    
T  779034 tttgaaagaacttacgaaaacaacttatgacatgttcataagttgttttcatcttattttggtacactctccaagatagtttatgaaaacagtttata 779131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 10079079 - 10079180
Alignment:
Q  179 cataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaataga 278  Q
    ||||||||  ||||||||| ||| | ||| || |||| ||||||| ||||||||||||||||| ||||| | || |||| ||||  |||||| | |||||    
T  10079079 cataagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatcttttatcataga 10079178  T
Q  279 aa 280  Q
    ||    
T  10079179 aa 10079180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 28769348 - 28769409
Alignment:
Q  179 cataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||  ||| ||||||||| | ||| || |||| ||||||||||||||||||||||||    
T  28769348 cataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttata 28769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 31891835 - 31891790
Alignment:
Q  303 atgctataagctgcaaattaagttgtttacccaaacatgacctaat 348  Q
    ||||||||| ||||||||||||||||||| ||||| | ||||||||    
T  31891835 atgctataaactgcaaattaagttgtttatccaaataggacctaat 31891790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 40637437 - 40637474
Alignment:
Q  283 gcttattttcataagcacttatgctataagctgcaaat 320  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  40637437 gcttattatgataagcacttatgctataagctgcaaat 40637474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 2482780 - 2482740
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    |||||||||||||| ||||||||| |||||| |||||||||    
T  2482780 ttatgctataagcttcaaattaagctgtttatccaaacatg 2482740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 30665650 - 30665694
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaa 337  Q
    |||||||||||||||||||| || ||||||| ||||||| |||||    
T  30665650 ataagcacttatgctataagatggaaattaaattgtttatccaaa 30665694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 38189195 - 38189231
Alignment:
Q  295 aagcacttatgctataagctgcaaattaagttgttta 331  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  38189195 aagcacttgtgctataagttgcaaattaagttgttta 38189231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 47800670 - 47800583
Alignment:
Q  193 agcttattttcgtaagctgtccacaatagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaa 280  Q
    ||||||||||| |||||| | ||  ||||||||||||||||||||||||||||||   ||||||||||||  |||||||| |||||||    
T  47800670 agcttattttcataagctcttcaagatagcttatgaaaacagcttatacaaaaacattttaactttattttatcttttgttatagaaa 47800583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 39178323 - 39178431
Alignment:
Q  236 ttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgtttaccca 335  Q
    |||||||| ||| | ||||||||||||  ||||  || ||||||| ||||||| |  |||||||||||| |||||||||| ||| ||||||||||| |||    
T  39178323 ttatacaacaactgcttaactttattttatcttgagttatagaaatagcttatatg-ataagcacttatactataagctgtaaaataagttgtttatcca 39178421  T
Q  336 aacatgacct 345  Q
    |||| |||||    
T  39178422 aacaggacct 39178431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 50466604 - 50466650
Alignment:
Q  295 aagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  50466604 aagcagttatgttataagctgcaaattaaattgtttacccaaacatg 50466650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 52754696 - 52754600
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||| ||||  ||||||| ||| ||||||| |||||| | |||| ||||||||| | |||| | |||  ||||||||||||||||||||||||    
T  52754696 tttggaagagcttatgaaaacagtttatgacgtgtccataagctgctttcagcttatttcc-taagatttccgaaatagcttatgaaaacagcttata 52754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 54214932 - 54214895
Alignment:
Q  302 tatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||||||||||||||||||||||| |||||||    
T  54214932 tatgctataagctgcaaattaagttgtttatccaaaca 54214895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 2987115 - 2987067
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    |||| |||||||| ||||||||||||||||| ||||||| |||||||||    
T  2987115 ataaacacttatgttataagctgcaaattaacttgtttatccaaacatg 2987067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 42461348 - 42461276
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtcca 215  Q
    ||||| ||||||||  |||| ||| || ||||||||||||||||  ||| ||||||||||| |||||||||||    
T  42461348 tttgggagaacttatgaaaatagcctatgacgtgttcataagttgatttcagcttattttcataagctgtcca 42461276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 50298449 - 50298409
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  50298449 ttatgctataagcttcaaattaagttgtttatccaaacatg 50298409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 26883921 - 26883874
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacat 340  Q
    |||||| ||||||||||| ||||||||||||||||||||  |||||||    
T  26883921 ataagcgcttatgctatatgctgcaaattaagttgtttatacaaacat 26883874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 52315204 - 52315267
Alignment:
Q  177 ttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||| |||| ||||||||||| |||| | |||| ||||||||||| ||||| ||||||    
T  52315204 ttcataagttgctttcagcttattttcataagttttccaaaatagcttatggaaacaacttata 52315267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 6466137 - 6466220
Alignment:
Q  254 actttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||  |||| ||| ||| ||||| ||||||  ||||||| |||| |||||||||||||||  |||||||||| |||||||    
T  6466137 actttatttgatcttgtgttatataaacaacttatt--cataagcgcttacgctataagctgcaaaagaagttgtttatccaaaca 6466220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 17823065 - 17823019
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| |||||||||| |||||||||||||| |||||| |||||||    
T  17823065 ataagcccttatgctatgagctgcaaattaagctgtttatccaaaca 17823019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 26520373 - 26520419
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||| ||||||||||| |||| ||||||||||||||||| |||||||    
T  26520373 ataaacacttatgctagaagcagcaaattaagttgtttatccaaaca 26520419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 30066910 - 30066948
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgttta 331  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  30066910 ataagcgcttatgctataagctgcaaattaaattgttta 30066948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 331
Target Start/End: Complemental strand, 43824219 - 43824189
Alignment:
Q  301 ttatgctataagctgcaaattaagttgttta 331  Q
    |||||||||||||||||||||||||||||||    
T  43824219 ttatgctataagctgcaaattaagttgttta 43824189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 1706667 - 1706622
Alignment:
Q  195 cttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||| |||||||||||  |||| ||||||||||||||||||    
T  1706667 cttattttcataagctgtccaagatagtttatgaaaacagcttata 1706622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 25548542 - 25548599
Alignment:
Q  183 agttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||| |||| ||||| |||||||||  | |||| ||||||||||||||||||||||||    
T  25548542 agttgctttcagcttgttttcgtaatttctccaaaatagcttatgaaaacagcttata 25548599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 27721764 - 27721711
Alignment:
Q  193 agcttattttcgtaagctgtccacaatagcttatgaaaacagcttatacaaaaa 246  Q
    |||||||||||| ||||| ||||  ||| ||||||||||||||||||| |||||    
T  27721764 agcttattttcgcaagctctccaggataacttatgaaaacagcttatataaaaa 27721711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 51560414 - 51560459
Alignment:
Q  292 cataagcacttatgctataagctgcaaattaagttgtttacccaaa 337  Q
    ||||||| ||||||| |||||||| ||||||||||||||| |||||    
T  51560414 cataagcgcttatgcaataagctgtaaattaagttgtttatccaaa 51560459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 19039693 - 19039661
Alignment:
Q  307 tataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||||||||||||||||| |||||||    
T  19039693 tataagctgcaaattaagttgtttatccaaaca 19039661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 22573100 - 22573064
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtt 329  Q
    |||| |||||||| |||||||||||||||||||||||    
T  22573100 ataaacacttatgttataagctgcaaattaagttgtt 22573064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 39886725 - 39886765
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  39886725 ttatgctataagctgcaaaataatttgtttatccaaacatg 39886765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 45214303 - 45214251
Alignment:
Q  294 taagcacttatgctataagctgcaaattaagttgtttacccaaacatgaccta 346  Q
    ||||| |||||||| ||||| |||||||||||||||||  |||||||| ||||    
T  45214303 taagcgcttatgctttaagccgcaaattaagttgtttattcaaacatggccta 45214251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 45516675 - 45516643
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacc 333  Q
    |||||||||||||||||||||||| ||||||||    
T  45516675 ttatgctataagctgcaaattaagatgtttacc 45516643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 29316754 - 29316845
Alignment:
Q  149 agaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||| ||||||||| | |||| | ||||  |||||| ||||||||||||||||    
T  29316754 agaactaacaaaaacagcttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagcttata 29316845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 35379005 - 35379079
Alignment:
Q  159 aaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaaca 233  Q
    ||||||||| | ||| ||||||||||||  ||| ||||||||||| |||||| ||||  ||||||||||||||||    
T  35379005 aaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 28039457 - 28039506
Alignment:
Q  290 ttcataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| || |||||||||||| ||||||||||||||||||| |||||||    
T  28039457 ttcatatgcgcttatgctataaactgcaaattaagttgtttatccaaaca 28039506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 450014 - 450061
Alignment:
Q  292 cataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||| ||||||||||||||||||| |||| ||||||| |||||||    
T  450014 cataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 450061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 35378511 - 35378598
Alignment:
Q  149 agaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagct 236  Q
    ||||||||  ||||||||| | ||| ||||||||||||  ||| ||||||||||| |||||| ||||  || ||||| ||||||||||    
T  35378511 agaacttatgaaaacagctgatgacttgttcataagttattttcagcttattttcataagctatccaagattgcttacgaaaacagct 35378598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 6167426 - 6167472
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||||||||||||| |||||| | |||||||| |||||||    
T  6167426 ataagcacttatgctataagccgcaaatcatgttgtttatccaaaca 6167472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 18279826 - 18279864
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgttta 331  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  18279826 ataagcacttatgctataagttgcaaataaagttgttta 18279864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 40158682 - 40158644
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  40158682 ttatgctataagctacaaattaagttgtttatccaaaca 40158644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 41880646 - 41880692
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| ||| |||||||||||||||| ||||||||||| |||||||    
T  41880646 ataagcgcttgtgctataagctgcaaagtaagttgtttatccaaaca 41880692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 44438992 - 44439026
Alignment:
Q  302 tatgctataagctgcaaattaagttgtttacccaa 336  Q
    ||||||||||||||||||||||| |||||||||||    
T  44438992 tatgctataagctgcaaattaagctgtttacccaa 44439026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 5599194 - 5599231
Alignment:
Q  283 gcttattttcataagcacttatgctataagctgcaaat 320  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  5599194 gcttattatgataagcacttatgctataagctgcaaat 5599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 319
Target Start/End: Original strand, 28677632 - 28677806
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttataca 242  Q
    ||||| ||||||||  ||||||||||| ||| | ||||||||||  |||  |||||||| | |||||| |||| |||| ||||  || ||| ||||||||    
T  28677632 tttgggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagctctccaaaataacttacaaagacaacttataca 28677731  T
Q  243 aaaacggattaactttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaa 319  Q
     ||||   || |||||||||  ||||||  |||| ||| ||||||  | || ||||||||||| |||||||| ||||    
T  28677732 taaacattttgactttattttatcttttacaataaaaatagctta--tacacaagcacttatgttataagctccaaa 28677806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 40158808 - 40158719
Alignment:
Q  150 gaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttat 239  Q
    |||||||  ||||||||||| ||| |||| |||||||  ||| |||||| || | |||||| |||| |||| |||||||||||| |||||    
T  40158808 gaacttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctctccagaataacttatgaaaacaacttat 40158719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 13056178 - 13056138
Alignment:
Q  200 tttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||||| |||| ||||||||||||||||| ||||||    
T  13056178 tttcgtaagctctccataatagcttatgaaaacaacttata 13056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 41406999 - 41406955
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaa 337  Q
    |||||||||||||| ||||||| |||| ||||||||||| |||||    
T  41406999 ataagcacttatgccataagctacaaaataagttgtttatccaaa 41406955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 34619448 - 34619552
Alignment:
Q  233 agcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgtttac 332  Q
    |||||||||||||||   ||||| ||||||  |||||||| |||||||  ||||||   |||||||| |||||||||||||||||||||||| ||||||     
T  34619448 agcttatacaaaaacaatttaaccttattttatcttttgttatagaaatggcttata--cataagcaattatgctataagctgcaaattaagctgtttat 34619545  T
Q  333 ccaaaca 339  Q
    |||||||    
T  34619546 ccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 4920893 - 4920942
Alignment:
Q  292 cataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  4920893 cataagcacttatgctataagctgcaaattaagctgtttatccaaacatg 4920942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 48064228 - 48064181
Alignment:
Q  300 cttatgctataagctgcaaattaagttgtttacccaaacatgacctaa 347  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  48064228 cttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 48064181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 10199380 - 10199477
Alignment:
Q  142 atttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttat 239  Q
    |||||| |||||| |  |||| |||||| ||| ||||||||||||  ||| ||||||||||| |||||| || | ||||||||||||||| |||||||    
T  10199380 atttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttat 10199477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 27140558 - 27140438
Alignment:
Q  160 aaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttatacaaaaacggattaacttta 259  Q
    |||||||||| ||| ||| ||||||||  ||| ||||||||| | |||||| ||||  ||||||||| ||||||||||||| ||||||   ||||  |||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttatataaaaacaatttaatatta 27140459  T
Q  260 tttcgtcttttgtaatagaaa 280  Q
    |||  |||||||| |||||||    
T  27140458 ttttatcttttgttatagaaa 27140438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 7028307 - 7028245
Alignment:
Q  218 atagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaa 280  Q
    ||||||||||||||||||||||||||||||   ||||||||||||  |||||||  |||||||    
T  7028307 atagcttatgaaaacagcttatacaaaaacaacttaactttattttatcttttgctatagaaa 7028245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 34405015 - 34404932
Alignment:
Q  254 actttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||  |||| ||||| ||||||||||||||  ||||||  |||| | |||||||| |||||||||||||||| |||||||    
T  34405015 actttattttatcttgtgtaaaagaaacagcttatt--cataagtgcttacgttataagcttcaaattaagttgtttatccaaaca 34404932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 6292574 - 6292493
Alignment:
Q  159 aaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||||| ||| |||||||||| |  ||| ||||||||||| |||||| |||| ||||| ||| ||||| ||||||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctctccaaaatagtttacgaaaatagcttata 6292493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 7136971 - 7137068
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||| |||||||||  ||||  ||||| ||| | ||||||||||  ||| ||||||||||| |||| | ||||  |||||||||||||||||||||||    
T  7136971 tttgaaagaacttatgaaaatcgcttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 1565507 - 1565603
Alignment:
Q  142 atttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagctta 238  Q
    |||||||||||||||  || |||||||| ||| ||| |||||| |  ||| ||||||||||| | |||| |||| ||||| ||| ||||||||||||    
T  1565507 atttggaagaacttaggaagacagcttatgacatgtgcataagctgttttcagcttattttcatgagctctccaaaatagattaagaaaacagctta 1565603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 10280570 - 10280522
Alignment:
Q  291 tcataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||| |||||||||||||||| ||| ||||||||||| |||||||    
T  10280570 tcataagcgcttatgctataagctgtaaactaagttgtttatccaaaca 10280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 11639378 - 11639486
Alignment:
Q  132 tttttagacaatttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaa 231  Q
    |||| ||||||||| ||||| ||||  ||||||||||| ||| ||| |||||| |  ||| ||||||||||| |||||| || | |||| |||||| |||    
T  11639378 ttttgagacaatttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttatgcaaa 11639477  T
Q  232 cagcttata 240  Q
    ||| |||||    
T  11639478 cagtttata 11639486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 6031463 - 6031514
Alignment:
Q  159 aaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagct 210  Q
    ||||||||||| |||||| |||||||||| ||| | ||||||||||||||||    
T  6031463 aaaacagcttatgacgtgctcataagttcttttcaccttattttcgtaagct 6031514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 10199544 - 10199579
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaa 336  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10199544 ttatgctataagctgcaaaataagttgtttacccaa 10199579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 33527249 - 33527321
Alignment:
Q  265 tcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||  |||||| ||||||||  ||||||| |||||||| ||||||||||| |||| |||||| |||||||    
T  33527249 tcttttgttttagaaatagcttatt--cataagcgcttatgctctaagctgcaaaataagctgtttatccaaaca 33527321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 27820484 - 27820529
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||||    
T  27820484 ataagcgcttatgctataagctgcaaa-taagttgtttatccaaaca 27820529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 28689431 - 28689524
Alignment:
Q  149 agaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagct--tatgaaaacagcttata 240  Q
    |||||||||  |||||||||| ||| ||| ||||||||  ||| ||||||||||| |||||| ||||  ||||||  |||||||||| ||||||    
T  28689431 agaacttacggaaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaacaacttata 28689524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 34290334 - 34290236
Alignment:
Q  142 atttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||| |||| |||  |||| |||||| ||| | ||||||||||  ||| ||||||||||| |||| | | ||  |||||||||||||||||||||||    
T  34290334 atttgggagaatttattaaaaaagcttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttata 34290236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 47498987 - 47499032
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||||    
T  47498987 ataagcacttgtgctataagctgcaaa-taagttgtttatccaaaca 47499032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 1725246 - 1725287
Alignment:
Q  300 cttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  1725246 cttatgctataagctccaaattaagttgtttatacaaacatg 1725287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 27963361 - 27963438
Alignment:
Q  161 aacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagctta 238  Q
    ||||||||| ||| ||| ||||||||  ||| |||||||||   |||||| |||| ||||||||||||||||| ||||    
T  27963361 aacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacaactta 27963438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 37841917 - 37841884
Alignment:
Q  300 cttatgctataagctgcaaattaagttgtttacc 333  Q
    |||||||||| |||||||||||||||||||||||    
T  37841917 cttatgctattagctgcaaattaagttgtttacc 37841884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 2522657 - 2522597
Alignment:
Q  212 tccacaatagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgt 272  Q
    |||| ||||| |||||||||||||||||| |||| | | ||||||||||||  ||||||||    
T  2522657 tccagaatagtttatgaaaacagcttatataaaatcagtttaactttattttatcttttgt 2522597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 10082517 - 10082557
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  10082517 ttatgctataagctgaaatttaagttgtttatccaaacatg 10082557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 29128433 - 29128465
Alignment:
Q  299 acttatgctataagctgcaaattaagttgttta 331  Q
    |||||||||||||||||||||||||| ||||||    
T  29128433 acttatgctataagctgcaaattaagctgttta 29128465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 42808992 - 42808924
Alignment:
Q  220 agcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttat 288  Q
    ||||||||||||||||||||| ||||||   ||||||||||||  |||||||| |||||||||||||||    
T  42808992 agcttatgaaaacagcttatataaaaacaatttaactttattttatcttttgttatagaaacagcttat 42808924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 37138289 - 37138242
Alignment:
Q  292 cataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  37138289 cataagcacttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 46886841 - 46886893
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatgaccta 346  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  46886841 ataagcacttatgctataagctgcaaa-taagttgtttatccaaacaggaccta 46886893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 5435758 - 5435707
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatgacc 344  Q
    ||||||||||||||||||||||| |||||||||||  || ||||||||||||    
T  5435758 ataagcacttatgctataagctgtaaattaagttgcctatccaaacatgacc 5435707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 2128309 - 2128403
Alignment:
Q  221 gcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgca 317  Q
    |||||||||||||||||| |  |||||   ||||||||||||  |||||||| ||||||| ||||||  | ||||| | ||||||||||||||||||    
T  2128309 gcttatgaaaacagcttacagtaaaacaatttaactttattttatcttttgttatagaaatagctta--tacataaacgcttatgctataagctgca 2128403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 31762238 - 31762198
Alignment:
Q  307 tataagctgcaaattaagttgtttacccaaacatgacctaa 347  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  31762238 tataagctgcaaattaagttgtttatccaaacaagacctaa 31762198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 36887449 - 36887401
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||    
T  36887449 ataagcacttatcctataagctacaaattaagatgtttatccaaacatg 36887401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 54837007 - 54837095
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaa 231  Q
    |||||||||| |||  ||||||||||| ||| ||||||||| ||  |||  |||||||||  |||||||||||  ||||||||||||||    
T  54837007 tttggaagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataagctgtccaagatagcttatgaaaa 54837095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 55113590 - 55113555
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgt 328  Q
    |||| |||||||||||||||||||||||||||||||    
T  55113590 ataaacacttatgctataagctgcaaattaagttgt 55113555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 1217772 - 1217870
Alignment:
Q  142 atttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||| |||||  |||||||||| ||| ||| ||||||||  ||| | |||| |||| |||| | || |  |||||||||||||||||||||||    
T  1217772 atttggaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttata 1217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 39602182 - 39602280
Alignment:
Q  142 atttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||| ||||  || |||||||| ||| ||||||||| ||  ||| | ||||||||| |||| | || |  |||||||||||||||||||||||    
T  39602182 atttggaagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttata 39602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 41633407 - 41633361
Alignment:
Q  193 agcttattttcgtaagctgtccacaatagcttatgaaaacagcttat 239  Q
    ||||||||||| |||||| |||| ||||||| |||||||||||||||    
T  41633407 agcttattttcataagctctccaaaatagctgatgaaaacagcttat 41633361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 54180770 - 54180844
Alignment:
Q  160 aaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacag 234  Q
    |||||||||| ||| ||| ||||||||  ||| |||||||||   |||||| |||| ||||||||||||||||||    
T  54180770 aaacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacag 54180844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 19679859 - 19679888
Alignment:
Q  301 ttatgctataagctgcaaattaagttgttt 330  Q
    ||||||||||||||||||||||||||||||    
T  19679859 ttatgctataagctgcaaattaagttgttt 19679888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 36587921 - 36587880
Alignment:
Q  290 ttcataagcacttatgctataagctgcaaattaagttgttta 331  Q
    ||||||||| |||||||||||||||| ||||||| |||||||    
T  36587921 ttcataagcgcttatgctataagctgtaaattaaattgttta 36587880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 19679456 - 19679492
Alignment:
Q  300 cttatgctataagctgcaaattaagttgtttacccaa 336  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  19679456 cttatactataagctgcaaattaagttgtttatccaa 19679492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 21367765 - 21367665
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgt-gttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttatac 241  Q
    ||||| ||||||||  ||||||||||| ||| | ||||| ||| |  ||| ||||||||||| |||| | ||||  |||||||||||||||| |||||||    
T  21367765 tttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaacttatac 21367666  T
Q  242 a 242  Q
    |    
T  21367665 a 21367665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 30956780 - 30956831
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatgacct 345  Q
    |||||| ||| |||||||||||||||| |||| |||||| |||||||||||||    
T  30956780 ataagcccttgtgctataagctgcaaa-taagctgtttatccaaacatgacct 30956831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 30972592 - 30972643
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatgacct 345  Q
    |||||| ||| |||||||||||||||| |||| |||||| |||||||||||||    
T  30972592 ataagcccttgtgctataagctgcaaa-taagctgtttatccaaacatgacct 30972643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 44747426 - 44747478
Alignment:
Q  188 ctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||| ||||||||||| |||| | ||||  |||||||||||||||||||||||    
T  44747426 ctttcagcttattttcataagttttccaagatagcttatgaaaacagcttata 44747478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 465970 - 465899
Alignment:
Q  217 aatagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttat 288  Q
    ||||||||||| |||||||||||||||||||   ||||||||||||  |||||||| ||||||| |||||||    
T  465970 aatagcttatgtaaacagcttatacaaaaacaatttaactttattttatcttttgtcatagaaatagcttat 465899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 2568751 - 2568658
Alignment:
Q  147 gaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||||  ||||||||||| ||| | ||||||||||  ||| ||||||||||| | |||| ||||  |||||||||||||||| ||||||    
T  2568751 gaagaacttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttata 2568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 6587080 - 6587177
Alignment:
Q  143 tttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||||||| |||||||||||| |||  ||||||||| |  ||  |||||||||||  ||| | ||||| |||||||||||||||| ||||||    
T  6587080 tttggaagaacttaaaaaaacagcttatgacaggttcataagctgtttacagcttattttcacaagttctccactatagcttatgaaaacaacttata 6587177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 10772022 - 10772070
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  10772022 ataagcacttatgctataagctgcaaattaagttgtatattcaaacatg 10772070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 41819530 - 41819482
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaacatgacctaata 349  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  41819530 ttatgctataagctgtaaattaagttgcttacccaaacatggcctaata 41819482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 11054196 - 11054085
Alignment:
Q  222 cttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaatt 321  Q
    |||||||||||| ||||||| |||||  |||| ||||||||  |||||| | ||||||| |||||||   |||||||  ||||||||||||| | |||||    
T  11054196 cttatgaaaacatcttatacgaaaactaatta-ctttattttatcttttattatagaaatagcttata--cataagcgtttatgctataagccggaaatt 11054100  T
Q  322 aagttgtttacccaa 336  Q
    |||||||||| ||||    
T  11054099 aagttgtttatccaa 11054085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 3237115 - 3237045
Alignment:
Q  218 atagcttatgaaaacagcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttat 288  Q
    |||||||||||||||||||||||  |||| || || | | ||||| ||||||||||||||||| |||||||    
T  3237115 atagcttatgaaaacagcttatatgaaaatggtttgattctattttgtcttttgtaatagaaatagcttat 3237045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 8089725 - 8089671
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatgacctaa 347  Q
    |||| |||||||||||| |||| |||||||||||||||| ||||||||| |||||    
T  8089725 ataaacacttatgctatgagctacaaattaagttgtttatccaaacatggcctaa 8089671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 40731218 - 40731172
Alignment:
Q  295 aagcacttatgctataagctgcaaattaagttgtttacccaaacatg 341  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  40731218 aagcacttatgctataagctgcaaaataatttgtttatccaaacatg 40731172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 41957423 - 41957521
Alignment:
Q  142 atttggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||| |||||  |||||||||| ||| ||| ||||||||  ||| | ||||||||| |||| | || |  |||||||||||||||||||||||    
T  41957423 atttggaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttata 41957521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 41981872 - 41981935
Alignment:
Q  177 ttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||| | |||| |||||||||||||||| | || | ||||| ||||||||||||||||||    
T  41981872 ttcataagctgcttttagcttattttcgtaagttctcaaaaatagtttatgaaaacagcttata 41981935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 6593218 - 6593180
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  6593218 ttatgctataagctgtaaattaagttgtttatccaaaca 6593180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 30291179 - 30291141
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  30291179 ttatgctataagctgcaaattaagttggttatccaaaca 30291141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 5390203 - 5390232
Alignment:
Q  301 ttatgctataagctgcaaattaagttgttt 330  Q
    ||||||||||||||||||||||||||||||    
T  5390203 ttatgctataagctgcaaattaagttgttt 5390232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 8089059 - 8089026
Alignment:
Q  298 cacttatgctataagctgcaaattaagttgttta 331  Q
    |||||| |||||||||||||||||||||||||||    
T  8089059 cacttacgctataagctgcaaattaagttgttta 8089026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 29845050 - 29845087
Alignment:
Q  302 tatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  29845050 tatgctataagttgcaaattaagttgtttatccaaaca 29845087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 4014429 - 4014493
Alignment:
Q  175 tgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttat 239  Q
    |||||||||| |  ||| ||||||||||| |||| | ||||  ||||||||||||||||||||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 4014493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 5559642 - 5559610
Alignment:
Q  307 tataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||||||||||||||||| |||||||    
T  5559642 tataagctgcaaattaagttgtttatccaaaca 5559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 11707146 - 11707054
Alignment:
Q  149 agaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttatac 241  Q
    ||||||||  |||| || ||| ||| |||| |||||||  ||| |||||||||||  ||||| | ||  ||||||||||||||||||||||||    
T  11707146 agaacttatcaaaatagattatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttatac 11707054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 17258872 - 17258952
Alignment:
Q  159 aaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttat 239  Q
    |||| |||||| ||| |||||||||| |  ||| ||||||||||| |||||| | ||  |||| |||||||||||||||||    
T  17258872 aaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 38105005 - 38105053
Alignment:
Q  291 tcataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| | |||| ||||||||||||||| ||||||||||| |||||||    
T  38105005 tcataaacgcttacgctataagctgcaaaataagttgtttatccaaaca 38105053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 32386096 - 32386238
Alignment:
Q  160 aaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttatacaaaaacggattaacttta 259  Q
    ||||||||||| || ||| ||||||||  ||| |||||| |||| |||||| ||||  ||| || |||||||||||||||| |||||| | || ||||||    
T  32386096 aaacagcttacaacatgtccataagttgttttcagcttactttcataagctttccaggataactaatgaaaacagcttatataaaaacagttttacttta 32386195  T
Q  260 tttcgtcttttgtaatagaaacagcttattttcataagcacttat 304  Q
    |||  |||||| |||  |||| ||||||  | |||||||||||||    
T  32386196 ttttatcttttctaagtgaaatagctta--tacataagcacttat 32386238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 20368315 - 20368362
Alignment:
Q  292 cataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||||| | |||||||||| |||||||||||||| |||||||    
T  20368315 cataagcacttagggtataagctgccaattaagttgtttatccaaaca 20368362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 31624184 - 31624090
Alignment:
Q  146 ggaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||||  ||||||||||| ||| |||||||||| |  ||| | ||||||||| |||  | ||||  ||||| |||||||||||||||||    
T  31624184 ggaagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttata 31624090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 33089597 - 33089507
Alignment:
Q  149 agaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttat 239  Q
    ||||||||  ||||||||||| ||| |||| |||||||  |||| |||||||||| || |||  |||  ||||||||||||||||| ||||    
T  33089597 agaacttatgaaaacagcttaggacatgtttataagttgttttacgcttattttcataggctccccaagatagcttatgaaaacagtttat 33089507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 10657170 - 10657125
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaacatgaccta 346  Q
    |||||||||| |||||||| ||||||||||| || |||||||||||    
T  10657170 ttatgctatatgctgcaaaataagttgtttatccgaacatgaccta 10657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 12111038 - 12110989
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatga 342  Q
    |||||||||||| ||||||| ||||||||||| ||||||  |||||||||    
T  12111038 ataagcacttatactataagatgcaaattaagctgtttattcaaacatga 12110989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 31812035 - 31812083
Alignment:
Q  192 aagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||||| |||||| ||||  |||||||||||||||| ||||||    
T  31812035 aagcttattttcataagctctccaagatagcttatgaaaacaacttata 31812083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 31002945 - 31002992
Alignment:
Q  292 cataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  31002945 cataagcgcttatgctataagatgcaaattaagttgtttatccaaaca 31002992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 32156954 - 32156891
Alignment:
Q  274 atagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgtttacccaaa 337  Q
    ||||||| |||||||  | ||||||  ||||||||||||||||||||||||||||||| |||||    
T  32156954 atagaaatagcttatactgataagcgtttatgctataagctgcaaattaagttgtttatccaaa 32156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 38600420 - 38600458
Alignment:
Q  290 ttcataagcacttatgctataagctgcaaattaagttgt 328  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  38600420 ttcataagcgcttatgctataagctgcaaattaagttgt 38600458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 6824986 - 6824945
Alignment:
Q  174 gtgttcataagttcctttaagcttattttcgtaagctgtcca 215  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  6824986 gtgttcataagttcctttcagcttattttcataagctgtcca 6824945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 18749807 - 18749927
Alignment:
Q  160 aaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttatacaaaaacggattaacttta 259  Q
    |||||||||||||| ||||||||||    ||| ||||||||| | |||| | |||   ||||||||||||||||||||||| |||||  | || ||||||    
T  18749807 aaacagcttacgacatgttcataagcagttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttatataaaaatagtttgacttta 18749906  T
Q  260 tttcgtcttttgtaatagaaa 280  Q
     ||  |||||||| |||||||    
T  18749907 ctttatcttttgttatagaaa 18749927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 32791904 - 32791940
Alignment:
Q  303 atgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| ||||||||||||||||||||||||||||||    
T  32791904 atgctacaagctgcaaattaagttgtttacccaaaca 32791940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 331
Target Start/End: Complemental strand, 7612378 - 7612347
Alignment:
Q  300 cttatgctataagctgcaaattaagttgttta 331  Q
    ||||||||||||||||||||||||||||||||    
T  7612378 cttatgctataagctgcaaattaagttgttta 7612347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12110360 - 12110264
Alignment:
Q  233 agcttatacaaaaacggattaactttatttcgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgttta 331  Q
    ||||||||| |||||   || |||||||||  |||| ||||||||||| || |||||  ||||||  ||||||||||||| ||||||||||| ||||||    
T  12110360 agcttataccaaaacaatttgactttattttatcttgtgtaatagaaataggttatt--cataagtgcttatgctataagttgcaaattaagctgttta 12110264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 425965 - 426011
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| |||||||||||||||||||| |||||| |||| |||||||    
T  425965 ataagcgcttatgctataagctgcaaaataagttatttatccaaaca 426011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 25596024 - 25595986
Alignment:
Q  301 ttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  25596024 ttatgctataagctgcaagttaagttgtttatccaaaca 25595986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 30535498 - 30535468
Alignment:
Q  300 cttatgctataagctgcaaattaagttgttt 330  Q
    |||||||||||||||||||||||||||||||    
T  30535498 cttatgctataagctgcaaattaagttgttt 30535468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 46945821 - 46945775
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    |||||| |||| ||||||||||||||| ||||||||||| |||||||    
T  46945821 ataagcgcttaagctataagctgcaaactaagttgtttatccaaaca 46945775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 48131275 - 48131229
Alignment:
Q  293 ataagcacttatgctataagctgcaaattaagttgtttacccaaaca 339  Q
    ||||||||||||||| ||||||||||| |||||||| || |||||||    
T  48131275 ataagcacttatgctgtaagctgcaaaataagttgtgtatccaaaca 48131229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 9038204 - 9038112
Alignment:
Q  147 gaagaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    |||||||||| |||||||||||| ||| ||||||||| ||  ||| |||||||||||  ||| | ||||  |||| |||||||||||| |||||    
T  9038204 gaagaacttataaaaacagcttatgacatgttcataa-ttgttttcagcttattttcacaagttctccatgatagtttatgaaaacagtttata 9038112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 44822004 - 44821959
Alignment:
Q  195 cttattttcgtaagctgtccacaatagcttatgaaaacagcttata 240  Q
    ||||||||| |||| | |||| ||||||||||||||||||||||||    
T  44822004 cttattttcataagttctccagaatagcttatgaaaacagcttata 44821959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 7244742 - 7244686
Alignment:
Q  178 tcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacag 234  Q
    |||||||||  ||| ||||||||||| |||||| ||||  |||||||||||||||||    
T  7244742 tcataagttgttttcagcttattttcataagctctccaatatagcttatgaaaacag 7244686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 7644393 - 7644446
Alignment:
Q  274 atagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgtt 329  Q
    ||||||| ||||||||  |||||||||||||||||||||| | ||| |||||||||    
T  7644393 atagaaatagcttatt--cataagcacttatgctataagccgaaaaataagttgtt 7644446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 42656451 - 42656403
Alignment:
Q  283 gcttattttcataagcacttatgctataagctgcaaattaagttgttta 331  Q
    ||||||||| |||||| ||||||||||||||| | ||| ||||||||||    
T  42656451 gcttattttgataagcgcttatgctataagctactaatgaagttgttta 42656403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 47302858 - 47302822
Alignment:
Q  300 cttatgctataagctgcaaattaagttgtttacccaa 336  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  47302858 cttatgctacaagctgcaaattaagttgtttatccaa 47302822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 47510219 - 47510131
Alignment:
Q  150 gaacttacaaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagctta 238  Q
    |||||||  |||||||||||  ||  ||||||||| |||||| |||||||||||  ||| ||||||  | || ||||||||||||||||    
T  47510219 gaacttatgaaaacagcttataactagttcataagctccttttagcttattttcacaagttgtccaagagagtttatgaaaacagctta 47510131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 58518 - 58471
Alignment:
Q  295 aagcacttatgctataagctgcaaattaagttgtttacccaaacatgac 343  Q
    |||||||| |||| |||||||||||| |||||||||| |||||||||||    
T  58518 aagcacttgtgctctaagctgcaaat-aagttgtttatccaaacatgac 58471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 21333 - 21377
Alignment:
Q  218 atagcttatgaaaacagcttatacaaaaacggattaactttattt 262  Q
    |||||||||||||||||||||||| |||||   ||||||||||||    
T  21333 atagcttatgaaaacagcttatacgaaaacaatttaactttattt 21377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University