View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_high_1 (Length: 687)
Name: NF14447_high_1
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 51201903 - 51201485
Alignment:
| Q |
16 |
tttctttattcttctaatatttttgctgttctaagaagaagtttatttaactgtgttaattaagggaagtactcaacattgtaggtgccatgacgatgct |
115 |
Q |
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| T |
51201903 |
tttctttattcttctaatatttttgctgttctaagaagaagtttatttaactgtgttaattaagggaagtactcaacattgtaggtgccatgacgatgct |
51201804 |
T |
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| Q |
116 |
ctaaattgttgctagtcataaagtaactggttgtggggtattcactttaattagtcccgatcgtgttggtgaatccttgtcttgagctgttgtattattg |
215 |
Q |
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| T |
51201803 |
ctaaattgttgctagtcataaagtaactggttgtggggtattcactttaattagtcccgatcgtgttggtgaatccttgtcttgagctgttgtattattg |
51201704 |
T |
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| Q |
216 |
agctgctgtttttaataacaaattgttcttgctggatttattgatcttgtaaactttttgcgcatagtttatggctgttagttgtgattaattaactttg |
315 |
Q |
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| T |
51201703 |
agctgctgtttttaataacaaattgttcttgctggatttattgatcttgtaaactttttgcgcatagtttatggctgttagt--tgattaattaactttg |
51201606 |
T |
|
| Q |
316 |
cttctgcgaaaaaaggaatattcgaatgtgttgaaagctccaaataaagccaaaaaccggatttcacctactagtgcatagagatgcgtctcttttctag |
415 |
Q |
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| T |
51201605 |
cttctgcgaaaaaaggaatattcgaatgtgttgaaagctccaaataaagccaaaaaccggattttacctactagtgcatagagatgcgtctcttttctag |
51201506 |
T |
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| Q |
416 |
atgtaaactcatgtttatgcc |
436 |
Q |
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| T |
51201505 |
atgtaaactcatgtttatgcc |
51201485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 528 - 674
Target Start/End: Complemental strand, 51201398 - 51201263
Alignment:
| Q |
528 |
ctcctttctcaagtgtacaatcttattaatgtccaatccaaattcaaaagcaaaatcaattggttgagctcaaatgatcaacaagtttataaattgttct |
627 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
51201398 |
ctcctttctcaagtgtataatcttattaatgtccaatccaaattcaaaagcaaaatcaattggttgaactcaa-----------gtttataaattgttct |
51201310 |
T |
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| Q |
628 |
taacaaagttcatattaccactagtacttcattatcaatttattatt |
674 |
Q |
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| T |
51201309 |
taacaaagttcatattaccactagtacttcattatcaatttattatt |
51201263 |
T |
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