View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14447_high_12 (Length: 261)

Name: NF14447_high_12
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14447_high_12
NF14447_high_12
[»] chr2 (20 HSPs)
chr2 (1-221)||(8237773-8237978)
chr2 (1-135)||(21265728-21265855)
chr2 (1-143)||(22563210-22563345)
chr2 (25-143)||(12232563-12232673)
chr2 (1-120)||(156971-157082)
chr2 (25-144)||(22563400-22563512)
chr2 (1-135)||(20296270-20296397)
chr2 (25-143)||(29892989-29893098)
chr2 (1-77)||(12232728-12232804)
chr2 (25-143)||(17200078-17200189)
chr2 (25-143)||(20296606-20296717)
chr2 (1-77)||(34645606-34645681)
chr2 (1-80)||(17200244-17200323)
chr2 (1-123)||(29892820-29892934)
chr2 (1-58)||(13979710-13979767)
chr2 (25-144)||(21265562-21265673)
chr2 (39-143)||(4371454-4371551)
chr2 (25-80)||(34645736-34645791)
chr2 (25-76)||(13979822-13979873)
chr2 (95-127)||(33491421-33491453)
[»] chr8 (17 HSPs)
chr8 (1-143)||(41403925-41404061)
chr8 (1-143)||(14999171-14999306)
chr8 (1-143)||(41721993-41722128)
chr8 (1-77)||(6911195-6911271)
chr8 (1-80)||(40621693-40621772)
chr8 (1-143)||(43801637-43801772)
chr8 (25-136)||(6911036-6911140)
chr8 (1-145)||(16325010-16325149)
chr8 (8-77)||(22781226-22781294)
chr8 (25-143)||(8489373-8489484)
chr8 (29-143)||(14999365-14999476)
chr8 (33-143)||(15009056-15009159)
chr8 (25-143)||(16324844-16324955)
chr8 (25-142)||(41403760-41403870)
chr8 (1-44)||(8489539-8489582)
chr8 (28-143)||(43801470-43801579)
chr8 (25-73)||(22781118-22781166)
[»] chr3 (21 HSPs)
chr3 (1-136)||(43797518-43797646)
chr3 (1-142)||(4041349-4041483)
chr3 (1-126)||(29828847-29828965)
chr3 (1-77)||(46883578-46883654)
chr3 (1-143)||(38499819-38499953)
chr3 (1-140)||(25349876-25350008)
chr3 (1-77)||(8799482-8799558)
chr3 (1-143)||(53196988-53197123)
chr3 (1-80)||(43797699-43797778)
chr3 (24-143)||(38500011-38500122)
chr3 (7-76)||(48346054-48346123)
chr3 (25-143)||(43797352-43797463)
chr3 (25-80)||(46883471-46883526)
chr3 (28-143)||(8799317-8799425)
chr3 (25-80)||(4041238-4041294)
chr3 (106-144)||(29828684-29828722)
chr3 (28-65)||(20383228-20383265)
chr3 (25-80)||(29828732-29828788)
chr3 (86-137)||(53197227-53197278)
chr3 (86-143)||(48346223-48346280)
chr3 (29-77)||(43797836-43797883)
[»] chr1 (22 HSPs)
chr1 (1-143)||(3385477-3385612)
chr1 (1-80)||(13946978-13947057)
chr1 (1-142)||(27171800-27171934)
chr1 (1-143)||(24883135-24883269)
chr1 (1-80)||(37948844-37948923)
chr1 (1-135)||(33156621-33156747)
chr1 (1-80)||(34970151-34970230)
chr1 (3-77)||(43297019-43297093)
chr1 (1-134)||(33401023-33401148)
chr1 (1-80)||(38338833-38338912)
chr1 (25-136)||(49777013-49777117)
chr1 (25-137)||(34969991-34970096)
chr1 (1-54)||(42082895-42082948)
chr1 (1-52)||(39781148-39781199)
chr1 (1-144)||(49776818-49776953)
chr1 (25-80)||(27171989-27172044)
chr1 (86-145)||(24882969-24883028)
chr1 (25-80)||(38338723-38338778)
chr1 (28-143)||(3385308-3385419)
chr1 (25-80)||(13947112-13947167)
chr1 (34-80)||(5771964-5772010)
chr1 (25-57)||(39781253-39781285)
[»] chr7 (20 HSPs)
chr7 (1-152)||(26903423-26903563)
chr7 (17-148)||(25048205-25048330)
chr7 (1-77)||(6408420-6408496)
chr7 (25-152)||(19318138-19318258)
chr7 (1-143)||(19318313-19318449)
chr7 (1-115)||(48006290-48006397)
chr7 (1-143)||(35207344-35207476)
chr7 (1-144)||(2834367-2834501)
chr7 (25-127)||(35207194-35207289)
chr7 (1-143)||(35363318-35363453)
chr7 (28-80)||(26903621-26903673)
chr7 (90-135)||(6408261-6408306)
chr7 (1-37)||(29474512-29474548)
chr7 (25-65)||(48006195-48006235)
chr7 (104-143)||(19318481-19318520)
chr7 (25-138)||(29474603-29474708)
chr7 (28-79)||(35363511-35363562)
chr7 (7-49)||(46409617-46409659)
chr7 (86-135)||(39983881-39983930)
chr7 (106-142)||(2830833-2830869)
[»] chr4 (26 HSPs)
chr4 (1-137)||(5465859-5465988)
chr4 (1-77)||(9551283-9551359)
chr4 (1-77)||(19037781-19037857)
chr4 (8-143)||(24673894-24674022)
chr4 (1-144)||(11789858-11789994)
chr4 (1-66)||(46993235-46993300)
chr4 (1-77)||(26297479-26297555)
chr4 (5-77)||(3556534-3556607)
chr4 (1-77)||(23655233-23655310)
chr4 (9-69)||(21785775-21785835)
chr4 (28-144)||(50544255-50544364)
chr4 (1-77)||(1024966-1025041)
chr4 (25-77)||(11790052-11790104)
chr4 (1-144)||(17914916-17915050)
chr4 (27-137)||(46993073-46993176)
chr4 (29-144)||(7061971-7062079)
chr4 (28-143)||(9551418-9551526)
chr4 (106-143)||(26297323-26297360)
chr4 (36-127)||(42475892-42475976)
chr4 (25-77)||(1025096-1025148)
chr4 (25-77)||(17914772-17914824)
chr4 (86-137)||(54316073-54316124)
chr4 (28-77)||(23655126-23655175)
chr4 (28-77)||(26297373-26297421)
chr4 (1-37)||(32591247-32591283)
chr4 (1-65)||(53769551-53769615)
[»] chr5 (16 HSPs)
chr5 (1-143)||(31193965-31194100)
chr5 (1-143)||(36955460-36955595)
chr5 (1-77)||(42546408-42546484)
chr5 (1-80)||(39634860-39634938)
chr5 (1-143)||(14076834-14076970)
chr5 (25-144)||(31194155-31194267)
chr5 (5-66)||(32346967-32347028)
chr5 (25-143)||(17370067-17370178)
chr5 (25-80)||(304068-304122)
chr5 (25-144)||(8754657-8754769)
chr5 (25-77)||(42546539-42546591)
chr5 (25-134)||(32347087-32347189)
chr5 (1-42)||(304177-304218)
chr5 (1-32)||(17370233-17370264)
chr5 (25-80)||(39634993-39635048)
chr5 (86-143)||(36955303-36955360)
[»] chr6 (8 HSPs)
chr6 (1-144)||(16125521-16125657)
chr6 (1-136)||(22748754-22748882)
chr6 (1-80)||(11014377-11014456)
chr6 (25-143)||(22748588-22748699)
chr6 (1-80)||(24565270-24565347)
chr6 (28-77)||(11014514-11014563)
chr6 (28-77)||(33277365-33277414)
chr6 (25-77)||(16125712-16125764)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8237978 - 8237773
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||| ||       ||| |||||||||    
T  8237978 tatgtatttttattaaacaaatatttgtttttaa-tttaaaatctcaactattagatacttttttgccacatgtcttgca-------tcctaatcctaaa 8237887  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactcgatttttatggtta--agcttgttctaaacataatgccatattacgtctagaaaagg 198  Q
    |         ||||||||||||||||| |||||||| |||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||    
T  8237886 t---------ggagcttagcctaaatggagcatacctaaactcgatttttacggttataagcttgttctaaacataatgccatattacgtctagaaaagg 8237796  T
Q  199 tggaatgacaatttacggtggtg 221  Q
    |||||||||||||||||||||||    
T  8237795 tggaatgacaatttacggtggtg 8237773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 21265728 - 21265855
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||       || |||||||| ||||||    
T  21265728 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccattagatacttttttgccacatgtc-------ttgcatccaaaccctaaa 21265820  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatac 135  Q
    || ||||||||||||||||| |||||  |||||||    
T  21265821 tagagtaaatggagcttagcttaaatagagcatac 21265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 22563345 - 22563210
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||       || |||||||| ||||||    
T  22563345 tatgtagttttattaaacaaatatttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtc-------ttgcatccaaaccctaaa 22563253  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  |||||||||||||||||||||||| ||||||||| |||||    
T  22563252 tggagtaaatggagcttagcctaaatggagcatacccgaactc 22563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 12232673 - 12232563
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||       |||||| |||||||| |||||||||||||||||||||    
T  12232673 ttgttttttaatttaaaatctcaaccgttagata-ttttttgccacatgtcttaca-------tccaaaccctaaatagagtaaatggagcttagcctaa 12232582  T
Q  125 atgaagcatacccaaactc 143  Q
    ||| |||||| ||||||||    
T  12232581 atggagcatatccaaactc 12232563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 157082 - 156971
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| || || |||||       ||||||||||||||||||    
T  157082 tatgtatttttattaaacaaatatttgttttttaatttcaaatctcaaccgttagatatttttctgcca-atgtc-------ttacatccaaatcctaaa 156991  T
Q  101 taaagtaaatggagcttagc 120  Q
    |  |||||||||||||||||    
T  156990 tggagtaaatggagcttagc 156971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 22563400 - 22563512
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||       || ||||||||||||||||  ||||||||||| |||||||||    
T  22563400 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtc-------ttgcatccaaatcctaaatggagtaaatggagtttagcctaa 22563492  T
Q  125 atgaagcatacccaaactcg 144  Q
    ||| ||||||||| ||||||    
T  22563493 atggagcatacccgaactcg 22563512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20296397 - 20296270
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||||| | |||| |||||||||||| ||||||| |||||||||||| || |||||       || |||||||| ||||||    
T  20296397 tatgtatttttattaaacaaatattcggtttttaatttaaaatcttaaccgttggatacttttttgccatatgtc-------tttcatccaaaccctaaa 20296305  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatac 135  Q
    | ||||||||||| ||||||| ||||| |||||||    
T  20296304 tgaagtaaatggatcttagccaaaatggagcatac 20296270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 29892989 - 29893098
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||||       || |||||||| |||||||| ||||||| |||||||||||||    
T  29892989 ttgttttttaatttaaaatctcaaccgttagata--tttttgtcacatgtc-------ttgcatccaaaccctaaatagagtaaatagagcttagcctaa 29893079  T
Q  125 atgaagcatacccaaactc 143  Q
    ||| ||||||||| |||||    
T  29893080 atggagcatacccgaactc 29893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12232728 - 12232804
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| | |||||||| ||||||| ||||||||||    
T  12232728 tatgtatttttattaaacaaatatttgttttttaatttaatatctcacctgttagatatttttttgccacatgtctt 12232804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 17200189 - 17200078
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||| ||||||| || |||| |||||||||||||       ||||||||||||||  |||||||||||||| ||||||    
T  17200189 ttgttttttaatttaaaatctcaaccattagatatttatttgccacatgtcttaca-------tccaaatcctaaatggagtaaatggagctttgcctaa 17200097  T
Q  125 atgaagcatacccaaactc 143  Q
    ||| ||||||||| |||||    
T  17200096 atggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 20296606 - 20296717
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||||||||||||| |||| ||||||| ||||||||       |||||||||| || |||||  |||||||||||||||||||||    
T  20296606 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtc-------ttacatccaattcttaaatggagtaaatggagcttagcctaa 20296698  T
Q  125 atgaagcatacccaaactc 143  Q
    ||  |||||||||||||||    
T  20296699 atagagcatacccaaactc 20296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34645681 - 34645606
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  34645681 tatgtatttttattaaataaatatttgttttttaatttaaaatctcaatcgttagata-ttttttgccacatgtctt 34645606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17200244 - 17200323
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||| ||||||  |||||||||| |||| ||||||||| ||||||| |||||||||||||    
T  17200244 tatgtatttttattaaacaaatatctgttttataatttaaaatatcaatcgttagatatttttttgccacatgtcttaca 17200323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 29892934 - 29892820
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||||| ||||||  ||||| ||       ||||||||||||||||||    
T  29892934 tatgtatttttattaaataaatatttattttttaatttaaaatctcgaccattagata-tttttttccacatatc-------ttacatccaaatcctaaa 29892843  T
Q  101 taaagtaaatggagcttagccta 123  Q
    |||| ||||||||||||| ||||    
T  29892842 taaaataaatggagcttaaccta 29892820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13979767 - 13979710
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagata 58  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  13979767 tatgtatttttattaaacaaatatttattttttaatttaaaatctcaatcgttagata 13979710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 21265673 - 21265562
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||       || |||||||| |||||||  ||||||| |||||||| ||||    
T  21265673 ttgttttttaatttaaaatctcaaccgttagata-ttttttgccacatgtc-------ttgcatccaaaccctaaatggagtaaattgagcttagtctaa 21265582  T
Q  125 atgaagcatacccaaactcg 144  Q
    ||| ||||||||| ||||||    
T  21265581 atggagcataccctaactcg 21265562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 4371551 - 4371454
Alignment:
Q  39 aaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccca 138  Q
    |||||||||||| ||||||| ||||||| |||||||||| ||       |||||| |||||||  |||||||||||||||||||||||| |||||||||     
T  4371551 aaaatctcaaccattagatatttttttgccacatgtcttgca-------tccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccg 4371459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 34645736 - 34645791
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  34645736 ttgttttttaatttaaaatctcaaccgttagatattttcttgccacatgtcttaca 34645791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 13979822 - 13979873
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtct 76  Q
    |||||||| ||||||||||||||| ||||||||| ||||||| || ||||||    
T  13979822 ttgttttttaatttaaaatctcaatcgttagatatttttttgccatatgtct 13979873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 33491421 - 33491453
Alignment:
Q  95 cctaaataaagtaaatggagcttagcctaaatg 127  Q
    |||||||| ||||||||||||||||||||||||    
T  33491421 cctaaatagagtaaatggagcttagcctaaatg 33491453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 41403925 - 41404061
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttt-tttgtcacatgtcttacaagttacatccaaatcctaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||       || |||||||| |||||    
T  41403925 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttaaatattttgtttgtcacatgtc-------ttgcatccaaaccctaa 41404017  T
Q  100 ataaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    ||| ||||||| || |||| |||||||| |||||||||||||||    
T  41404018 atagagtaaattgaacttaacctaaatggagcatacccaaactc 41404061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 14999306 - 14999171
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||| ||| ||||||||       || |||||||| ||||||    
T  14999306 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaactattagatactttattgccacatgtc-------ttgcatccaaaccctaaa 14999214  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  ||||||| |||||||||||||||| |||||| || |||||    
T  14999213 tggagtaaattgagcttagcctaaatggagcatatccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 41721993 - 41722128
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||||  |||||||       || |||||||   |||||    
T  41721993 tatgtatttttattaaacaaatatttgtttttttatttaaaatcttaaccgttagatatttttttgcaacatgtc-------ttgcatccaagctctaaa 41722085  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |||||||||| |||||||||||||||||| ||||||| |||||    
T  41722086 taaagtaaatagagcttagcctaaatgaaacatacccgaactc 41722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6911195 - 6911271
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||    
T  6911195 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtctt 6911271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 40621693 - 40621772
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  ||||||| |||||    
T  40621693 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttaccacatgttttaca 40621772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 43801637 - 43801772
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||| ||||||| ||||| ||       || ||||||||  |||||    
T  43801637 tatgtatttttattaaacaaatattagttttttaatttaaaatttcaactgttagatatttttttgccacatatc-------ttgcatccaaactctaaa 43801729  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  |||||||||||||||||||||||| | ||||||| |||||    
T  43801730 tggagtaaatggagcttagcctaaatggaacatacccgaactc 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 6911140 - 6911036
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||| ||||||||| ||||||| |||||||||       |||||||||| |||||||  |||||||||||||||||||||    
T  6911140 ttgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtct-------tacatccaaaccctaaatggagtaaatggagcttagcctaa 6911048  T
Q  125 atgaagcatacc 136  Q
    ||| ||||||||    
T  6911047 atggagcatacc 6911036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 16325010 - 16325149
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtc--acatgtcttacaagttacatccaaatccta 98  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||  |  |||||||       || |||||||| ||||    
T  16325010 tatgtatttttatcaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttaccatacatgtc-------ttgcatccaaacccta 16325102  T
Q  99 aataaagtaaatggagcttagcctaaatgaagcatacccaaactcga 145  Q
    |||  ||||||||||| || || |||||||||||||| | |||||||    
T  16325103 aatggagtaaatggagtttggcttaaatgaagcatactcgaactcga 16325149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 22781226 - 22781294
Alignment:
Q  8 ttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||    
T  22781226 ttttattaaacaaatatttgttttttaatttaaaatctcaaccgttaaata-ttttttgtcacatatctt 22781294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 8489484 - 8489373
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||| ||||||||| ||||||| |||||||||       |||||||||| |||||||  | |||||| |||||| |||||    
T  8489484 ttgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtct-------tacatccaaaccctaaatggaataaatgaagcttaacctaa 8489392  T
Q  125 atgaagcatacccaaactc 143  Q
    ||| |||||||||||||||    
T  8489391 atggagcatacccaaactc 8489373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 14999365 - 14999476
Alignment:
Q  29 ttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatga 128  Q
    |||| |||||||||||| ||| |||| ||||||||||||||||||| || ||   | |||||||||||||||| ||||||||| |||||| ||||||||     
T  14999365 tttttaatttaaaatcttaactgttatatacttttttgtcacatgttttgca---tccatccaaatcctaaatgaagtaaatgtagcttaacctaaatgg 14999461  T
Q  129 agcatacccaaactc 143  Q
    |||||| || |||||    
T  14999462 agcatatccgaactc 14999476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 15009056 - 15009159
Alignment:
Q  33 aaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagca 132  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||||       ||||||| |||||||  |||||||| ||||||||||||||| ||||    
T  15009056 aaatttaaaatcttaactgttagatacttttttgccacatgtcttac-------atccaaaccctaaatggagtaaatgaagcttagcctaaatggagca 15009148  T
Q  133 tacccaaactc 143  Q
    ||||| |||||    
T  15009149 tacccgaactc 15009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 16324955 - 16324844
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||       || |||||||| |||||||  | ||||| |||||||||||||    
T  16324955 ttgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtc-------ttgcatccaaaccctaaatggattaaattgagcttagcctaa 16324863  T
Q  125 atgaagcatacccaaactc 143  Q
    ||| ||||| ||| |||||    
T  16324862 atggagcatgcccgaactc 16324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 41403870 - 41403760
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||| ||       ||||||| |||||||||||  ||||||| |||||||  ||||    
T  41403870 ttgttttttaatttaaaatctcaactgttagatatttttttgtcacatatc-------ttacatcaaaatcctaaatggagtaaattgagcttaatctaa 41403778  T
Q  125 atgaagcatacccaaact 142  Q
    ||||||||||||| ||||    
T  41403777 atgaagcatacccgaact 41403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8489539 - 8489582
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatc 44  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  8489539 tatgtatttttattaaacaaatatttgttttttaatttaaaatc 8489582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 43801579 - 43801470
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatactttttt-gtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaat 126  Q
    ||||| ||||||||||||||||||||| ||  |||||| | |||||||||||||       ||||||  ||||||  |||||||| || |||||||||||    
T  43801579 ttttttaatttaaaatctcaaccgttatattttttttttgccacatgtcttaca-------tccaaactctaaatggagtaaatgaagtttagcctaaat 43801487  T
Q  127 gaagcatacccaaactc 143  Q
    ||||||||||| |||||    
T  43801486 gaagcatacccgaactc 43801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 22781166 - 22781118
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatg 73  Q
    |||||||| |||||||||||||||| ||||||||  |||||| ||||||    
T  22781166 ttgttttttaatttaaaatctcaactgttagatatctttttgccacatg 22781118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 43797518 - 43797646
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||||||||||||||       || |||||||| ||||||    
T  43797518 tatgtatttttattaaacaaatatttggtttttaatttaaaatcttaaccgttggatacttttttgtcacatgtc-------tttcatccaaaccctaaa 43797610  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacc 136  Q
    || |||||||||| ||||||||||||| ||||||||    
T  43797611 tagagtaaatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4041349 - 4041483
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||       || |||||||| ||||||    
T  4041349 tatgtatttttagtaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtc-------ttgcatccaaaccctaaa 4041441  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaact 142  Q
    |  |||||||| ||||||||||||||| ||||||||| ||||    
T  4041442 tggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 29828847 - 29828965
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||       ||||||||||||||||||    
T  29828847 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatatc-------ttacatccaaatcctaaa 29828939  T
Q  101 taaagtaaatggagcttagcctaaat 126  Q
    |  | ||||||||||||||| |||||    
T  29828940 tggaataaatggagcttagcttaaat 29828965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46883578 - 46883654
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  46883578 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtctt 46883654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38499953 - 38499819
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||  ||||||| ||||||||||    ||   ||||||| ||||||    
T  38499953 tatgtatttttattaaacaaatatttggtttttagtttaaaatctcaaccgttagat-tttttttgccacatgtctt----gt---atccaaaccctaaa 38499862  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  |||||||||||||||||||||||| ||||||||| |||||    
T  38499861 tggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25349876 - 25350008
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||  ||||||| ||||||||       ||||||||||| ||||||    
T  25349876 tatgtatttttgttaaacaaatatttattttttaatttaaaatctcaaccgttagatgtttttttggcacatgtc-------ttacatccaaaccctaaa 25349968  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaa 140  Q
    || | |||||||||||||   |||||| ||||||||||||    
T  25349969 tagaataaatggagcttaatttaaatggagcatacccaaa 25350008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8799482 - 8799558
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||    
T  8799482 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttatatatttttttgccacatgtctt 8799558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 53197123 - 53196988
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||        || |||||||| ||||||    
T  53197123 tatgtatttttattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgt-------tttgcatccaaaccctaaa 53197031  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    || |||||||| || ||||| ||||||  |||||||| |||||    
T  53197030 tagagtaaatgaagtttagcttaaatggggcatacccgaactc 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43797778 - 43797699
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||| ||||||||||||||||||| ||||| |||||||||| |||||| ||||||| ||||||| |||||||||||||    
T  43797778 tatgtaattttattaaacaaatatttattttttaatttaaaatttcaaccattagatatttttttgccacatgtcttaca 43797699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 38500011 - 38500122
Alignment:
Q  24 tttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagccta 123  Q
    ||||||||| |||||||||||||||| |||||||| ||||||  ||||||||||||       ||||||| ||||| |  ||||||||||||||||||||    
T  38500011 tttgttttttaatttaaaatctcaactgttagatatttttttc-cacatgtcttac-------atccaaaccctaattggagtaaatggagcttagccta 38500102  T
Q  124 aatgaagcatacccaaactc 143  Q
    |||| ||||||||| |||||    
T  38500103 aatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 48346123 - 48346054
Alignment:
Q  7 tttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtct 76  Q
    |||||||||||||||||||| |||||  ||||||||||| |||||||||||| |||||||||| ||||||    
T  48346123 tttttattaaacaaatatttatttttttatttaaaatctaaaccgttagatatttttttgtcatatgtct 48346054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 43797463 - 43797352
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||||||||||||| |||| ||||||| ||||||||       || |||||||| | |||||  |||||||||||||||||||||    
T  43797463 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtc-------ttgcatccaaaccttaaatggagtaaatggagcttagcctaa 43797371  T
Q  125 atgaagcatacccaaactc 143  Q
    ||| ||||||  |||||||    
T  43797370 atggagcatattcaaactc 43797352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 46883526 - 46883471
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  46883526 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttaca 46883471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 8799425 - 8799317
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatg 127  Q
    ||||| |||||||||||||||| ||||||||  |||||| |||||||||| ||       |||||| |||||||  |||||||||||| |||||||||||    
T  8799425 ttttttaatttaaaatctcaactgttagatatatttttgccacatgtcttgca-------tccaaaccctaaatggagtaaatggagcctagcctaaatg 8799333  T
Q  128 aagcatacccaaactc 143  Q
     ||||||||| |||||    
T  8799332 gagcatacccgaactc 8799317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 4041294 - 4041238
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagata-cttttttgtcacatgtcttaca 80  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  4041294 ttgttttttaatttaaaatctcaaccgttagatattttttttgtcacatgtcttaca 4041238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 29828722 - 29828684
Alignment:
Q  106 taaatggagcttagcctaaatgaagcatacccaaactcg 144  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  29828722 taaatggagcttagcctaaatgaagcatacccgaactcg 29828684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 20383228 - 20383265
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatactttttt 65  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  20383228 ttttttaatttaaaatctcaaccgttagatactttttt 20383265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 29828788 - 29828732
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagata-cttttttgtcacatgtcttaca 80  Q
    |||||||| ||||||||||||||||||||| |||  |||||||||||| ||||||||    
T  29828788 ttgttttttaatttaaaatctcaaccgttaaatattttttttgtcacaagtcttaca 29828732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 53197227 - 53197278
Alignment:
Q  86 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccc 137  Q
    |||||||| |||||||  |||||||| ||||||||||||||| |||||||||    
T  53197227 catccaaaccctaaatggagtaaatgaagcttagcctaaatggagcataccc 53197278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 48346223 - 48346280
Alignment:
Q  86 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    ||||||||| ||||||||||||||| || || | |||||||| ||||||||| |||||    
T  48346223 catccaaattctaaataaagtaaatagaactcaacctaaatggagcatacccgaactc 48346280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 43797836 - 43797883
Alignment:
Q  29 ttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||||    
T  43797836 tttttaatttaaaatctcatccgttagata-ttttttgccacatgtctt 43797883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 3385477 - 3385612
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||  ||||| ||       ||||||||||| ||||||    
T  3385477 tatgtatttttattaaacaaatatttattttttaatttaaaatctcaaccgttagatatttttttaccacatatc-------ttacatccaaaccctaaa 3385569  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  |||||||||||||| ||||||||| ||||||||| |||||    
T  3385570 tggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13947057 - 13946978
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  13947057 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttaca 13946978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 27171934 - 27171800
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||       |||||||||| | ||||    
T  27171934 tatgtatttctgttaaacaaatatttgttttttaatttaaaatctcgaccgttagatatttttttgccacatgtct-------tacatccaaaccataaa 27171842  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaact 142  Q
    |  |||||||| ||||||||||||||||||||||||| ||||    
T  27171841 tggagtaaatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 24883135 - 24883269
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||| ||       || |||||||| ||||||    
T  24883135 tatgtatttttattaaacaaatatttttttttaa-tttaaaatctcaaccgttagatatttttttgccacatatc-------ttgcatccaaaccctaaa 24883226  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  |||||||||||||||||||||||| | ||||||| |||||    
T  24883227 tggagtaaatggagcttagcctaaatggaacatacccgaactc 24883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 37948923 - 37948844
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||    
T  37948923 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgcaacatgtcttaca 37948844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 33156621 - 33156747
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||    ||   ||||||| ||||||    
T  33156621 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagat-tttttttgccacatgtctt----gt---atccaaaccctaaa 33156712  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatac 135  Q
    |  |||||||  ||||||||||||||| |||||||    
T  33156713 tggagtaaataaagcttagcctaaatggagcatac 33156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 34970151 - 34970230
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||| |||||||||||||    
T  34970151 tatgtatttttattaaacaaatatttattttttaatttaaaatcttaaccgttagatatttttttgccacatgtcttaca 34970230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 43297019 - 43297093
Alignment:
Q  3 tgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  43297019 tgtatttttattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttggcacatgtctt 43297093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 33401023 - 33401148
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||  ||||||| ||||||||       ||||||| ||| | ||||    
T  33401023 tatgtatttttattaaacaaatatttattttttaatttaaaatcttaaccgtta-atttttttttgccacatgtc-------ttacatctaaaccttaaa 33401114  T
Q  101 taaagtaaatggagcttagcctaaatgaagcata 134  Q
    |||||||||| |||||||||||||||| ||||||    
T  33401115 taaagtaaattgagcttagcctaaatgtagcata 33401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 38338833 - 38338912
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||| ||||||| |||||||||||||    
T  38338833 tatgtatttttattaaacaaatatttattttttaatttaaaatttcaactgttagatatttttttgccacatgtcttaca 38338912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 49777013 - 49777117
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||       || |||||||| |||||||| | ||||||||| |||||||||    
T  49777013 ttgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtc-------ttgcatccaaaccctaaatagaataaatggagtttagcctaa 49777105  T
Q  125 atgaagcatacc 136  Q
    ||| ||||||||    
T  49777106 atggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 34970096 - 34969991
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||  ||||||||       || ||||||||||||||||  ||||||||||| ||| |||||    
T  34970096 ttgttttttaatttaaaatctcaaccgttagatatttttttaccacatgtc-------ttgcatccaaatcctaaattgagtaaatggagtttaacctaa 34970004  T
Q  125 atgaagcataccc 137  Q
    |||||||||||||    
T  34970003 atgaagcataccc 34969991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42082948 - 42082895
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgtta 54  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42082948 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgtta 42082895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39781199 - 39781148
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgt 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39781199 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgt 39781148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 49776953 - 49776818
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||| || | ||| ||||||||||||||||||||  ||| ||||||  ||||||||       || |||||||||||||||    
T  49776953 tatgtatttttattaaacaaata-ttatcttttaatttaaaatctcaaccgttcaatatttttttaccacatgtc-------ttgcatccaaatcctaaa 49776862  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactcg 144  Q
    |  |||||||  |||||||| |||||| ||||||||| ||||||    
T  49776861 tggagtaaataaagcttagcttaaatggagcatacccgaactcg 49776818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 27171989 - 27172044
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||    
T  27171989 ttgttttttaattgaaaatctcaaccgttagatatttttttgccacatgtcttaca 27172044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 24883028 - 24882969
Alignment:
Q  86 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcga 145  Q
    |||||||| |||||||  ||||||||||| |||||||||||| ||||||||| |||||||    
T  24883028 catccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactcga 24882969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 38338778 - 38338723
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||| ||||||||||||||||||||||||| ||||||| || || |||||||    
T  38338778 ttgttttttaatttaaaatctcaaccgttagatatttttttgccatatatcttaca 38338723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 3385419 - 3385308
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgt---cacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    ||||| |||||||||||| |||||||||||| |||||| |   |||||||||||||       |||||| |||||||   ||||| | ||||||||||||    
T  3385419 ttttttaatttaaaatcttaaccgttagatattttttttttgccacatgtcttaca-------tccaaaccctaaatggggtaaacgaagcttagcctaa 3385327  T
Q  125 atgaagcatacccaaactc 143  Q
    ||||||||||||| |||||    
T  3385326 atgaagcatacccgaactc 3385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 13947112 - 13947167
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||||    
T  13947112 ttgttttttaatttaaaatatcaaccgttacatatttttttaccacatgtcttaca 13947167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 5772010 - 5771964
Alignment:
Q  34 aatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    ||||||||||||||||||||||||| ||||||| || || |||||||    
T  5772010 aatttaaaatctcaaccgttagatatttttttgccatatatcttaca 5771964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 39781253 - 39781285
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagat 57  Q
    |||||||| ||||||||||||||||||||||||    
T  39781253 ttgttttttaatttaaaatctcaaccgttagat 39781285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26903563 - 26903423
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||| |         |||| ||||||    
T  26903563 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttcgatacttttttgccacatgt-ttaaa---------caaaccctaaa 26903474  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactcgatttttat 152  Q
    | ||||||||| ||||||||||||||| ||||||||| ||||| ||||||||    
T  26903473 tgaagtaaatgaagcttagcctaaatg-agcatacccgaactcaatttttat 26903423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 25048205 - 25048330
Alignment:
Q  17 acaaatatttgtttttaaatttaaaatctcaaccgttaga-tacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagc 115  Q
    |||||||||| ||||| |||||||||||||||||||| || || |||||||||||||||||| ||       |||||||||||||| |||||||||||||    
T  25048205 acaaatatttattttttaatttaaaatctcaaccgtttgaatatttttttgtcacatgtcttgca-------tccaaatcctaaatgaagtaaatggagc 25048297  T
Q  116 ttagcctaaatgaagcatacccaaactcgattt 148  Q
    |||||||||||| ||||||||| ||||| ||||    
T  25048298 ttagcctaaatggagcatacccgaactccattt 25048330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6408420 - 6408496
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  6408420 tatgtatttttattagacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtctt 6408496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 19318258 - 19318138
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||       ||||||||||  ||||||  ||||||||| ||||| |||||    
T  19318258 ttgttttttaatttaaaatctcaatcgttagatatttttttgtcacatgtct-------tacatccaaactctaaatggagtaaatggcgcttaacctaa 19318166  T
Q  125 atgaagcatacccaaactcgatttttat 152  Q
    ||| |||||||||||||||| |||||||    
T  19318165 atggagcatacccaaactcggtttttat 19318138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 19318313 - 19318449
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttt-taaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaa 99  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||       || |||| ||| | |||    
T  19318313 tatgtatgtttattaaacaaatatttgttttcttaatttaaaatctcaaccgttagatatttttttgccacatgtc-------ttgcatctaaaccttaa 19318405  T
Q  100 ataaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    ||  |||||||| ||||||||||||||| ||||||||| |||||    
T  19318406 atggagtaaatgaagcttagcctaaatggagcatacccgaactc 19318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 48006290 - 48006397
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||| |||||||        || |||||||||||||||    
T  48006290 tatgtattttcattaaacaaatatttattttttaatttaaaatctcaaccgttaaatatttttttgccacatgt-------tttgcatccaaatcctaaa 48006382  T
Q  101 taaagtaaatggagc 115  Q
    || ||||||||||||    
T  48006383 tagagtaaatggagc 48006397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 35207344 - 35207476
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||     ||||||| ||||||||       || |||||||| ||||||    
T  35207344 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcgaccgtta---ttttttttgccacatgtc-------ttgcatccaaaccctaaa 35207433  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  ||||||||||| |||||||||||| |||||| || |||||    
T  35207434 tggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 2834367 - 2834501
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||||| |||| ||| | ||||| ||||||| ||    ||   ||||||| ||||||    
T  2834367 tatgtatttttattaaacaaatatt--ttttttaatttaaaatctcaactgttacatattattttgccacatgtttt----gt---atccaaaccctaaa 2834457  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactcg 144  Q
    |  | |||||||| ||||||||||||| ||||||||||||||||    
T  2834458 tggaataaatggaacttagcctaaatggagcatacccaaactcg 2834501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 35207289 - 35207194
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||       || |||||||| |||||||  |||||||||||||||||||||    
T  35207289 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtc-------ttgcatccaaaccctaaatggagtaaatggagcttagcctaa 35207197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 35363453 - 35363318
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||  ||||||| |||||||       ||| |||| |||  |||||    
T  35363453 tatgtatttttattaaacaaatacttattttttaatttaaaatctcaaccgttatatttttttttgccacatgt-------gttgcatctaaactctaaa 35363361  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  |||||||| | ||||||||||||| ||||||||| |||||    
T  35363360 tggagtaaatgaaacttagcctaaatggagcatacccgaactc 35363318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 26903621 - 26903673
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  26903621 ttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttaca 26903673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 6408306 - 6408261
Alignment:
Q  90 caaatcctaaataaagtaaatggagcttagcctaaatgaagcatac 135  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||    
T  6408306 caaatcctaaatgaagtaaatggagcttagactaaatggagcatac 6408261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29474548 - 29474512
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatt 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29474548 tatgtatttttattaaacaaatatttgttttttaatt 29474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 48006235 - 48006195
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatactttttt 65  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  48006235 ttgttttttaatttaaaatctcaaccgttagatattttttt 48006195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 19318481 - 19318520
Alignment:
Q  104 agtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  19318481 agtaaatggagcttagcctaaatggagcatacccgaactc 19318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 29474603 - 29474708
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||| |||||||||||||| |||||| | |||||||       || |||||||   ||||||| ||||||||||| |||||||||    
T  29474603 ttgttttttaatttaaaatttcaaccgttagatatttttttct-acatgtc-------ttgcatccaagctctaaatagagtaaatggagtttagcctaa 29474694  T
Q  125 atgaagcataccca 138  Q
    ||| |||| |||||    
T  29474695 atggagcacaccca 29474708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 35363511 - 35363562
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttac 79  Q
    ||||| ||||||||||||||||| ||||||| ||||||| ||||| ||||||    
T  35363511 ttttttaatttaaaatctcaaccattagatatttttttgccacatatcttac 35363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 46409617 - 46409659
Alignment:
Q  7 tttttattaaacaaatatttgtttttaaatttaaaatctcaac 49  Q
    ||||||||||||||||||||||||||  |||| ||||||||||    
T  46409617 tttttattaaacaaatatttgtttttttattttaaatctcaac 46409659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 39983881 - 39983930
Alignment:
Q  86 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatac 135  Q
    |||||||| |||||||  |||||||||||||| ||||||||| |||||||    
T  39983881 catccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatac 39983930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 2830869 - 2830833
Alignment:
Q  106 taaatggagcttagcctaaatgaagcatacccaaact 142  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  2830869 taaatggagcttaacctaaatgaagcatacccgaact 2830833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 5465988 - 5465859
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||       |||||| ||| ||||||    
T  5465988 tatgtattattattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtct-------tacatctaaaccctaaa 5465896  T
Q  101 taaagtaaatggagcttagcctaaatgaagcataccc 137  Q
    | ||||||||| | ||||||||||||| |||||||||    
T  5465895 tgaagtaaatgaaacttagcctaaatggagcataccc 5465859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9551359 - 9551283
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  9551359 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgacacatgtctt 9551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19037857 - 19037781
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||    
T  19037857 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatttttttttgtcgcatgtctt 19037781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 24673894 - 24674022
Alignment:
Q  8 ttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagta 107  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||| |||||       |||||||||||  ||||||| ||||    
T  24673894 ttttattaaataaatatttgttttttaatttaaaatctcaatcgttagatatttttttgtcatatgtc-------ttacatccaaactctaaatagagta 24673986  T
Q  108 aatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |||| || |||||||||||| |||||| || |||||    
T  24673987 aatgaagtttagcctaaatggagcatatccgaactc 24674022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 11789994 - 11789858
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||| ||||| ||       || |||| ||| ||||||    
T  11789994 tatgtatttctattaaacaaatatttgttttttaatttaaaatctcaaccgttgaatatttttttgccacatatc-------ttgcatctaaaccctaaa 11789902  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactcg 144  Q
    |  |||||||| ||||| ||||||||| ||||||||| ||||||    
T  11789901 tggagtaaatgaagctttgcctaaatggagcatacccgaactcg 11789858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 46993235 - 46993300
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttg 66  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||    
T  46993235 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaatcgttagatatttttttg 46993300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26297479 - 26297555
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||| ||||||||||||| ||||    
T  26297479 tatgtatttttattaaacgaatatttattttttaatttaaaatctcaactgttagatatttttttgtcacatatctt 26297555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 3556534 - 3556607
Alignment:
Q  5 tatttttattaaacaaatatttgtttttaa-atttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||||||||||||||||||||||||||   | |||||||||||||||||||||| ||||||| ||||||||||    
T  3556534 tatttttattaaacaaatatttgttttttctaattaaaatctcaaccgttagatatttttttgccacatgtctt 3556607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23655233 - 23655310
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatact-tttttgtcacatgtctt 77  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||  | |||||| ||||||||||    
T  23655233 tatgtatttttattaaacaaatatttgatttttaatttaaaatttcaaccgttagattttctttttgccacatgtctt 23655310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 21785835 - 21785775
Alignment:
Q  9 tttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtca 69  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||    
T  21785835 tttattaaacaaatatttattttttaatttaaaatctcaactgttagatactgttttgtca 21785775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 50544364 - 50544255
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatg 127  Q
    ||||| |||||||||||||| ||||||||||  |||||| |||||||||| ||       |||||| |||||||| | ||||||||||||||||||||||    
T  50544364 ttttttaatttaaaatctcatccgttagatatctttttgccacatgtcttgca-------tccaaaccctaaatagaataaatggagcttagcctaaatg 50544272  T
Q  128 aagcatacccaaactcg 144  Q
     |||||| || ||||||    
T  50544271 gagcatatccgaactcg 50544255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1025041 - 1024966
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||  ||||| |||||||||| |||||||||||| | ||||||| ||||| ||||    
T  1025041 tatgtatttttattaaacaaatattaattttttaatttaaaatatcaaccgttagaca-ttttttgccacatatctt 1024966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 11790052 - 11790104
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  11790052 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtctt 11790104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 17914916 - 17915050
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||| ||||||||||  |||| ||||| |||||||||| ||||||||| |||| ||||||| ||||||||       || ||||||||   ||||    
T  17914916 tatgtatttctattaaacaa--attttttttttaatttaaaatatcaaccgttggatatttttttgccacatgtc-------ttgcatccaaactttaaa 17915006  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactcg 144  Q
    |  |||||||||| ||||||||||||| |||||| || ||||||    
T  17915007 tggagtaaatggaacttagcctaaatggagcatatccgaactcg 17915050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 46993176 - 46993073
Alignment:
Q  27 gtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaat 126  Q
    |||||| ||||||| ||||||||||||||||| |||||||  |||| |||| ||       |||||| |||||||| | ||||||||||||| |||||||    
T  46993176 gttttttaatttaacatctcaaccgttagatatttttttgctacatatcttgca-------tccaaaccctaaatagaataaatggagcttaacctaaat 46993084  T
Q  127 gaagcataccc 137  Q
    | |||||||||    
T  46993083 ggagcataccc 46993073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 7062079 - 7061971
Alignment:
Q  29 ttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatga 128  Q
    |||| |||| |||||||||||||||| ||| ||||||| ||||||||       || |||||||| | |||||  ||||||| ||| ||||||||||||     
T  7062079 tttttaattaaaaatctcaaccgttatatatttttttgccacatgtc-------ttgcatccaaaccataaatggagtaaatagaggttagcctaaatgg 7061987  T
Q  129 agcatacccaaactcg 144  Q
    ||||||||| ||||||    
T  7061986 agcatacccgaactcg 7061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 9551418 - 9551526
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatg 127  Q
    ||||| ||||||||||||||||||| ||||| ||||||| || |||||       || |||||||  |||||||  ||||||||||| |||| |||||||    
T  9551418 ttttttaatttaaaatctcaaccgtgagatatttttttgccaaatgtc-------ttccatccaagccctaaatggagtaaatggagtttagtctaaatg 9551510  T
Q  128 aagcatacccaaactc 143  Q
     ||||||||| |||||    
T  9551511 gagcatacccgaactc 9551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 26297360 - 26297323
Alignment:
Q  106 taaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26297360 taaatggagcttagcctaaatggagcatacccaaactc 26297323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 42475976 - 42475892
Alignment:
Q  36 tttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatg 127  Q
    ||||||||||||| ||||||||| ||||||| ||| |||||| ||       |||||| |||||||| |||||||| |||||||||||||||    
T  42475976 tttaaaatctcaatcgttagatatttttttgccacgtgtcttgca-------tccaaaccctaaatagagtaaatgaagcttagcctaaatg 42475892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 1025096 - 1025148
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||| ||||||||||||||||||||| ||| |||||| |||||| ||||    
T  1025096 ttgttttttaatttaaaatctcaaccgttatatatttttttatcacatatctt 1025148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 17914824 - 17914772
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||| |||||||||||||||| ||| |||| ||||||| ||||||||||    
T  17914824 ttgttttttaatttaaaatctcaactgttggatatttttttgccacatgtctt 17914772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 54316073 - 54316124
Alignment:
Q  86 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccc 137  Q
    |||||||| |||||||  ||||||| |||||||||||||||| |||||||||    
T  54316073 catccaaaccctaaatggagtaaatagagcttagcctaaatggagcataccc 54316124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 23655175 - 23655126
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||| |||||||||| |||||||||||||| ||||||| | ||||||||    
T  23655175 ttttttaatttaaaatttcaaccgttagatatttttttgccgcatgtctt 23655126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 26297421 - 26297373
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||| ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  26297421 ttttttaatttaaaatctcaatcgttagata-ttttttgccacatgtctt 26297373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32591283 - 32591247
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatt 37  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  32591283 tatgtatttttattaaacaaatatttattttttaatt 32591247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53769551 - 53769615
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatactttttt 65  Q
    ||||||||||||||||| |||||||| |||||  ||||||||| | ||| |||| ||| ||||||    
T  53769551 tatgtatttttattaaataaatatttatttttttatttaaaattttaactgttaaatattttttt 53769615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 31194100 - 31193965
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||| |||| ||||||| ||||||||       || |||||||| | ||||    
T  31194100 tatgtatttttattaaacaaatatttagtttttaatttaaaatctcaaccgttggatatttttttgccacatgtc-------ttgcatccaaaccttaaa 31194008  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |  |||||||||||||||||||||||| ||||||||| |||||    
T  31194007 tggagtaaatggagcttagcctaaatggagcatacccgaactc 31193965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 36955460 - 36955595
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||  | |||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||| |||       ||||| ||||||    
T  36955460 tatgtatttttattaatgagatatttgttttttaatttaaaatcgcaaccgttagatatttttttgccacatgtcttgcaa-------ccaaaccctaaa 36955552  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    || ||||||| |||||||||||||||| ||| |||||||||||    
T  36955553 tagagtaaatagagcttagcctaaatggagcgtacccaaactc 36955595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42546484 - 42546408
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| || |||||||    
T  42546484 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccaaatgtctt 42546408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39634938 - 39634860
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||    
T  39634938 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagat-tttttttgccacatgtcttaca 39634860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 14076834 - 14076970
Alignment:
Q  1 tatgtatttttattaaacaaa-tatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaa 99  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||       || |||||||| |||||    
T  14076834 tatgtatttttattaaaaaaaatatttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtc-------ttgcatccaaaccctaa 14076926  T
Q  100 ataaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    ||  ||||||| || ||||||||||||| |||||| || |||||    
T  14076927 atggagtaaatagaacttagcctaaatggagcatatccgaactc 14076970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 31194155 - 31194267
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||||||||||||| |||| ||||||| ||||||||       || |||||||| | |||||  |||||||||||||||||||||    
T  31194155 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtc-------ttgcatccaaaccttaaatggagtaaatggagcttagcctaa 31194247  T
Q  125 atgaagcatacccaaactcg 144  Q
    ||| ||||||||| ||||||    
T  31194248 atggagcatacccgaactcg 31194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 32347028 - 32346967
Alignment:
Q  5 tatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttg 66  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  32347028 tatttttattaaacaaatatttgttttttaatttaaaatctcaaccgtaagatatttttttg 32346967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 17370178 - 17370067
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||       || |||||||| |||||||  ||||||||||| ||||| |||    
T  17370178 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtc-------ttgcatccaaaccctaaatggagtaaatggagtttagcataa 17370086  T
Q  125 atgaagcatacccaaactc 143  Q
    ||| ||||||||| |||||    
T  17370085 atggagcatacccgaactc 17370067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 304122 - 304068
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  304122 ttgtttttaaatttaaaatctcaaccgttatata-ttttttgtcacatgtcttaca 304068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 8754769 - 8754657
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||| |||||||||||||  ||||||| ||||||||       || |||||||| |||||||| ||||||||||| |||| ||||    
T  8754769 ttgttttttaatttaaaatttcaaccgttagatctttttttgccacatgtc-------ttccatccaaaccctaaatagagtaaatggagtttagtctaa 8754677  T
Q  125 atgaagcatacccaaactcg 144  Q
    ||| || |||||| ||||||    
T  8754676 atggaggatacccgaactcg 8754657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 42546539 - 42546591
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  42546539 ttgttttttaatttaaaatctcaaccgttagatgtttttttgtcacatgtctt 42546591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 32347087 - 32347189
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| ||||||| |||| ||| |||||||| ||||||||||||||||       ||||||||||| | |||||  ||||| |||||||||||||||    
T  32347087 ttgttttttaatttaagatctaaacagttagatatttttttgtcacatgtc-------ttacatccaaaccttaaatggagtaattggagcttagcctaa 32347179  T
Q  125 atgaagcata 134  Q
    ||| ||||||    
T  32347180 atggagcata 32347189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 304177 - 304218
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaa 42  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  304177 tatgtatttttattaaataaatatttgttttttaatttaaaa 304218  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 17370233 - 17370264
Alignment:
Q  1 tatgtatttttattaaacaaatatttgttttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  17370233 tatgtatttttattaaacaaatatttgttttt 17370264  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 39634993 - 39635048
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||| ||||||||||||||||||||| ||| ||||||| | ||| |||||||    
T  39634993 ttgttttttaatttaaaatctcaaccgttacatatttttttgccgcatatcttaca 39635048  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 36955360 - 36955303
Alignment:
Q  86 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 143  Q
    |||||||| |||||||  |||||||| ||||||||||||||| ||| ||||| |||||    
T  36955360 catccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactc 36955303  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 16125657 - 16125521
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||| ||||||| ||||||||       || |||||||| ||||||    
T  16125657 tatgtatttttattaaacaaatatttgttttttaatttaaaatttcaatcgttaaatatttttttgccacatgtc-------ttgcatccaaaccctaaa 16125565  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacccaaactcg 144  Q
    | || |||||| || |||||||||||| ||||||||| ||||||    
T  16125564 tgaaataaatgaagtttagcctaaatggagcatacccgaactcg 16125521  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22748754 - 22748882
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaa 100  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||| |||||||  ||||||||       || |||||||||||||||    
T  22748754 tatgtatttttattaaacaaatatttgatttttaatttaaaatcttaaccgttggatgcttttttaccacatgtc-------tttcatccaaatcctaaa 22748846  T
Q  101 taaagtaaatggagcttagcctaaatgaagcatacc 136  Q
    |  |||||||||| ||||| ||||||| ||||||||    
T  22748847 tggagtaaatggatcttagtctaaatggagcatacc 22748882  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11014456 - 11014377
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    ||||| ||||||||||||||||||||  |||| |||||||||||||||| |||| ||| |||||| ||||||||||||||    
T  11014456 tatgtgtttttattaaacaaatatttactttttaatttaaaatctcaactgttaaatatttttttatcacatgtcttaca 11014377  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 22748699 - 22748588
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaa 124  Q
    |||||||| |||||||||||||||||||| |||| ||||||| ||||||||       || |||||||||| |||||  |||||||||||| ||||||||    
T  22748699 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtc-------ttgcatccaaatcttaaatggagtaaatggagcatagcctaa 22748607  T
Q  125 atgaagcatacccaaactc 143  Q
    ||  ||||||||| |||||    
T  22748606 attgagcatacccgaactc 22748588  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24565270 - 24565347
Alignment:
Q  1 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtcttaca 80  Q
    |||||||||||||||||||| | ||| ||||  ||||||||||||||||||||||||  ||||||| |||||||||||||    
T  24565270 tatgtatttttattaaacaattttttttttt--aatttaaaatctcaaccgttagatgtttttttgccacatgtcttaca 24565347  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 11014514 - 11014563
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||| |||||||||| |||||||||| ||| ||||||||||||| ||||    
T  11014514 ttttttaatttaaaatttcaaccgttaaatatttttttgtcacatatctt 11014563  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 33277414 - 33277365
Alignment:
Q  28 tttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    ||||| ||||||||||||||||| ||| ||| ||||||| ||||||||||    
T  33277414 ttttttaatttaaaatctcaaccattaaatatttttttgccacatgtctt 33277365  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 16125712 - 16125764
Alignment:
Q  25 ttgtttttaaatttaaaatctcaaccgttagatacttttttgtcacatgtctt 77  Q
    |||||||| |||||||||||||| | |||||||| | ||||||||||| ||||    
T  16125712 ttgttttttaatttaaaatctcatctgttagatattattttgtcacatatctt 16125764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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