View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_high_14 (Length: 239)
Name: NF14447_high_14
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1081874 - 1082092
Alignment:
| Q |
1 |
tgattgacttctccatgttataggcatagcgtctgccgaaaagccaaatattctttccttgagtgatgaagatgcatgttgatgtcatgttactgtttct |
100 |
Q |
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| T |
1081874 |
tgattcacttctccatgttataggcatagcgtctgccgaaaagcctaatattctttccttgagtgatgaagatgcatgttgatgtcatgttactgtttct |
1081973 |
T |
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| Q |
101 |
tttaacaggagtttgctaactaattactatcaaatctgaagttgcgattttgattcttttgctataagaatattgttgtatataacaatgagttaatagt |
200 |
Q |
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| T |
1081974 |
tttaacaggagtttgctaactaattactatcaaatctcaagttgcgattttgattcgtttgctataagaatattgttgtatataacaatgagttaataat |
1082073 |
T |
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| Q |
201 |
cattttagtctccgaatgt |
219 |
Q |
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| T |
1082074 |
cattttagtctcccaatgt |
1082092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 1043293 - 1043346
Alignment:
| Q |
52 |
tctttccttgagtgatgaagatgcatgttgatgtcatgttactgtttcttttaa |
105 |
Q |
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| T |
1043293 |
tctttcattgagtgatgaagatgcatgttgatgttatgttagtgtttcctttaa |
1043346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 18379391 - 18379472
Alignment:
| Q |
24 |
gcatagcgtctgccgaaaagccaaatattctttccttgagtgatgaagatgcatgttgatgtcatgttactgtttcttttaa |
105 |
Q |
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| T |
18379391 |
gcattgcgtcttctgaaaagtcaaatgttattttcttgagtgatgaagatgcatgttgatgttatgttagtgtttcctttaa |
18379472 |
T |
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