View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_high_3 (Length: 633)
Name: NF14447_high_3
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 42464925 - 42465258
Alignment:
| Q |
9 |
tcgaagaatataaatgcctagaatctagactagctaaaaaccactttgaggtatttaagttcaatttcatggacttctatgtactttttgaatatctaaa |
108 |
Q |
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| T |
42464925 |
tcgaaaaatataaatgcctagactctagactagctaaaaaccactttgaggtatttaagttcaatttcatggacttctatgtactttttgaatatctaaa |
42465024 |
T |
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| Q |
109 |
ttcagctagtgaaaatgtttaattatataattaacaacgtgcagctgtgaaagaattgataatcctctg----gatatatcatatgattaaacatgttgg |
204 |
Q |
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| T |
42465025 |
ttcagctagtgaaaatgtttaattatataattaacaacgtgcagctgtgaaagaattgttaatcctctgagaggatatatcatatgattaaacatgttgg |
42465124 |
T |
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| Q |
205 |
cacgactttatattttgtacagtaacaccattttctttacttatttaagaaatacggtaatgatataatattcctggatcattctccatgtaactacatc |
304 |
Q |
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| T |
42465125 |
cacgactttatattttgtacagtaacaccattttctttacttatttaagaaatacggtaatgatataatattcctggatcattctccatgtaactacatc |
42465224 |
T |
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| Q |
305 |
attggctagcaatactgtttctagacaataactt |
338 |
Q |
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| T |
42465225 |
attggctagcaatactgtttctagacaataactt |
42465258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 369 - 533
Target Start/End: Original strand, 42465289 - 42465453
Alignment:
| Q |
369 |
tcagtaatattgttgactagcaaagatagagacatattcgtgggattcacgaaggcaacttctttcaattagtgacgtgctactgaaattgaaagttata |
468 |
Q |
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| T |
42465289 |
tcagtaatattgttgactagcaaagatagagacatattcgtgggattcacgaaggcaacttctttcaattagtgacgtgcaactgaaattgaaagttata |
42465388 |
T |
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| Q |
469 |
tataagaacacatgtacaagtacaaatcaatgagcatccattaatcacattcattaatttataca |
533 |
Q |
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| T |
42465389 |
tataagaacacatgtacaagtacaaatcaatgagcatccattaatcacattcattaatttataca |
42465453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 532 - 616
Target Start/End: Original strand, 42465427 - 42465511
Alignment:
| Q |
532 |
cattaatcacattcattactttatacagaatcttaacaatggctgcaatctatcaatactgtagcttgttcattacacttacatt |
616 |
Q |
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| T |
42465427 |
cattaatcacattcattaatttatacagaatcttaacaatggctgcaatctatcaatattgtagcttgttcattacacttacatt |
42465511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 432 - 530
Target Start/End: Original strand, 23919948 - 23920046
Alignment:
| Q |
432 |
ttcaattagtgacgtgctactgaaattgaaagttatatataagaacacatgtacaagtacaaatcaatgagcatccattaatcacattcattaatttat |
530 |
Q |
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| T |
23919948 |
ttcaattagttacgtgcaactggtattggtggttatatataagaacacacgtacaagtacaaatcaatgagcatccattaatcccattcattaatttat |
23920046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 580
Target Start/End: Original strand, 23920023 - 23920071
Alignment:
| Q |
532 |
cattaatcacattcattactttatacagaatcttaacaatggctgcaat |
580 |
Q |
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| T |
23920023 |
cattaatcccattcattaatttatccagaatcttaacaatggttgcaat |
23920071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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