View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14447_low_11 (Length: 358)

Name: NF14447_low_11
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14447_low_11
NF14447_low_11
[»] chr7 (2 HSPs)
chr7 (12-341)||(8131853-8132182)
chr7 (22-167)||(21549585-21549730)
[»] chr8 (3 HSPs)
chr8 (22-106)||(5211236-5211320)
chr8 (25-164)||(33823812-33823951)
chr8 (22-107)||(28437307-28437392)
[»] chr2 (1 HSPs)
chr2 (25-179)||(3945850-3946004)
[»] chr4 (3 HSPs)
chr4 (22-179)||(22483385-22483542)
chr4 (25-77)||(35721705-35721757)
chr4 (14-76)||(7435185-7435247)
[»] chr5 (1 HSPs)
chr5 (25-74)||(13481016-13481065)
[»] chr3 (1 HSPs)
chr3 (44-164)||(41086156-41086276)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 8132182 - 8131853
Alignment:
Q  12 agcagcacagaaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8132182 agcagcacagaaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgt 8132083  T
Q  112 cgtcgttattggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaataaaagaagaagaggaaattcagtatcaaaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8132082 cgtcgttattggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaataaaagaagaaaaggaaattcagtatcaaaat 8131983  T
Q  212 cacctctaaaacctaatcataatgatcatctccagatcggtaccggtgctgctgctggtggttctagctcagcaagtgcaaattcttcttctaataatgg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8131982 cacctctaaaacctaatcataatgatcatctccagatcggtaccggtgctgctgctggtggttctagctcagcaagtgcaaattcttcttctaataatgg 8131883  T
Q  312 ttgcactaattctaatctgaatattggaat 341  Q
    |||||||||||||||| |||||||||||||    
T  8131882 ttgcactaattctaatgtgaatattggaat 8131853  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 21549585 - 21549730
Alignment:
Q  22 aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttatt 121  Q
    ||||||||||| ||||| || || ||||||||||| ||||||| ||||||||||| ||| || || || || || || |||||  |||||||  | ||||    
T  21549585 aaatgtccaaggtgtgattccaccaacacaaagttttgctacttcaacaactacagtctctcgcagccgcgacacttctgcaaggcttgtcgaaggtatt 21549684  T
Q  122 ggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttg 167  Q
    |||| || |||||||| ||| |||  || || ||||| ||||||||    
T  21549685 ggacaaagggtggtgcccttagaagtgtcccggttggcggtggttg 21549730  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 5211320 - 5211236
Alignment:
Q  22 aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaa 106  Q
    ||||||||| | ||||||||||  |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5211320 aaatgtccacgttgtgaatcaaacaacacaaaattctgctactacaacaactacaatctctcacaaccacgccatttttgcaaaa 5211236  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 33823812 - 33823951
Alignment:
Q  25 tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga 124  Q
    ||||||||||| || ||| |||||||||| || || |||||||||||||| || ||  | || || |||||||| ||||| || || |||||||||||||    
T  33823812 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgga 33823911  T
Q  125 ctaaaggtggtgcacttcgaaacgttcctgttggaggtgg 164  Q
    | ||||| |||||  |  ||||||||||  ||||||||||    
T  33823912 caaaaggaggtgctttaagaaacgttccaattggaggtgg 33823951  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 28437307 - 28437392
Alignment:
Q  22 aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaac 107  Q
    ||||||||||||||||| ||  |||||||||| ||||| |||||||||||||||| |||  | |||||| | ||||| ||||||||    
T  28437307 aaatgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaac 28437392  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 3946004 - 3945850
Alignment:
Q  25 tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga 124  Q
    |||||| | ||||| ||| ||||||||||||| || |||||||||||||||| | | ||||||||| | ||||| || ||| ||||    ||||||||||    
T  3946004 tgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattgga 3945905  T
Q  125 ctaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa 179  Q
    | | ||||||| | ||| |||| ||||||||||| |||||||  ||||| |||||    
T  3945904 caagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaa 3945850  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 22483542 - 22483385
Alignment:
Q  22 aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttatt 121  Q
    ||||||||||||||||| ||||  ||||| || || || ||||||||||| |||| ||||||||||||| |  |||| |||||  ||||| |  | ||||    
T  22483542 aaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatatt 22483443  T
Q  122 ggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa 179  Q
    |||||||||||||| ||||  | || ||||||||||| || || ||| ||| ||||||    
T  22483442 ggactaaaggtggtacactaaggaatgttcctgttggtggggggtgtcgaaagaacaa 22483385  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 35721705 - 35721757
Alignment:
Q  25 tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaa 77  Q
    |||||||||||||| ||||||||||||||||| || ||||||||||| |||||    
T  35721705 tgtccaagatgtgattcaacaaacacaaagttttgttactacaacaattacaa 35721757  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 7435185 - 7435247
Alignment:
Q  14 cagcacagaaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactaca 76  Q
    |||||| |||||||||| | ||||||||||| |||||||| || ||||||| |||||||||||    
T  7435185 cagcactgaaatgtccacgttgtgaatcaaccaacacaaaattttgctacttcaacaactaca 7435247  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 13481016 - 13481065
Alignment:
Q  25 tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaacta 74  Q
    |||||||||||||| ||| | |||||||| ||||||||||||||||||||    
T  13481016 tgtccaagatgtgactcacccaacacaaaattctgctactacaacaacta 13481065  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 41086276 - 41086156
Alignment:
Q  44 caaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaaaggtggtgcacttcg 143  Q
    ||||||| || ||||| ||||||||||| ||||   | || || |||||  |||||||||||  |||| | ||||||||||| ||||||||  | |||||    
T  41086276 caaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcg 41086177  T
Q  144 aaacgttcctgttggaggtgg 164  Q
     || ||||||||||| |||||    
T  41086176 gaatgttcctgttggtggtgg 41086156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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