View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14447_low_12 (Length: 354)
Name: NF14447_low_12
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_12 |
 | |
|
| [»] scaffold0755 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 32955360 - 32955036
Alignment:
| Q |
18 |
gcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955360 |
gcagggaggttggatctgtttgaaagattttgaacaagaaaactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
32955261 |
T |
|
| Q |
118 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955260 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctctcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
32955161 |
T |
|
| Q |
218 |
attaaataaannnnnnnnnnnnnnnnnnnnggttagtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattgg |
317 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955160 |
attaaatcattttttttcaatttattttttggttagtattatgctttgtcatgatttcttcataacaatggttactcttgattgaaaacaatggtattgg |
32955061 |
T |
|
| Q |
318 |
tactgttttgaatcaattgtagaat |
342 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
32955060 |
tgctgttttgaatcaattgtagaat |
32955036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 48577572 - 48577366
Alignment:
| Q |
18 |
gcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48577572 |
gcaggaaggttggatctgtttgaaggattttgaacaagaagattggacagctgttattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
48577473 |
T |
|
| Q |
118 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48577472 |
tattcaattaagtcagattttgattacatgtatattagattaagtctctatcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
48577373 |
T |
|
| Q |
218 |
attaaat |
224 |
Q |
| |
|
|| |||| |
|
|
| T |
48577372 |
atgaaat |
48577366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 248 - 342
Target Start/End: Complemental strand, 48577341 - 48577247
Alignment:
| Q |
248 |
ggttagtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattggtactgttttgaatcaattgtagaat |
342 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
48577341 |
ggttagtattatgctttctcatgatttcttcataacaatggttactcttgattgaaaacaatagtattggtgctgttttgaatcaattgtagaat |
48577247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 5913126 - 5912815
Alignment:
| Q |
18 |
gcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5913126 |
gcaggaaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
5913027 |
T |
|
| Q |
118 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
217 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5913026 |
tattcaattaattca-ttttttattacatgtatattagattaagtcgctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
5912928 |
T |
|
| Q |
218 |
attaaataaannnnnnnnnnnnnnnnnnnnggttagtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattgg |
317 |
Q |
| |
|
|| |||| | |||||||||||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5912927 |
atgaaatca------------tttttttttggttagtattatgctttctcattatttcttcataacaatggttactcttgattgaaaacaatggtattgg |
5912840 |
T |
|
| Q |
318 |
tactgttttgaatcaattgtagaat |
342 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
5912839 |
tgctgttttgaatcaattgtagaat |
5912815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 25864203 - 25863998
Alignment:
| Q |
18 |
gcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25864203 |
gcaggaaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
25864104 |
T |
|
| Q |
118 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
217 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25864103 |
tattcaattaattca-tttttgattacatgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
25864005 |
T |
|
| Q |
218 |
attaaat |
224 |
Q |
| |
|
|| |||| |
|
|
| T |
25864004 |
atgaaat |
25863998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 25863970 - 25863877
Alignment:
| Q |
249 |
gttagtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattggtactgttttgaatcaattgtagaat |
342 |
Q |
| |
|
||||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25863970 |
gttagtattatgctttctcattatttcttcataacaatggttactcttgattgaaaacaatggtattggtgctgttttgaatcaattgtagaat |
25863877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 32327573 - 32327660
Alignment:
| Q |
252 |
agtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattggtactgttttgaatcaattgtag |
339 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||||||||| || ||||||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
32327573 |
agtattatgctttctcatgatttcttcataacaatggttactcttggtttaaaacaatgttattggtgctgttatgaatcaattgtag |
32327660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 32327398 - 32327452
Alignment:
| Q |
25 |
ggttggatctgtttgaaggattttgaacaagaagactggacagctgctattggga |
79 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32327398 |
ggttggatctgtttgaagggttttgaacaagaagactggacagctgctactggga |
32327452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 32327460 - 32327538
Alignment:
| Q |
139 |
gattacatgtatattagattaagtctctcttatgtaatttgg-atctcaatgtgtatatgaaattaagttttatccatc |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||| || || |||||||||| |||||||||||||||||||||| |
|
|
| T |
32327460 |
gattacatgtatattagattaactctctttcatgtaatctgttatgtcaatgtgtacatgaaattaagttttatccatc |
32327538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 10463368 - 10463573
Alignment:
| Q |
18 |
gcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463368 |
gcaggaaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggatggaaagtctctaaagaaggcttagatcttgttatgtg |
10463467 |
T |
|
| Q |
118 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
217 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463468 |
tattcaattaattca-tttttgattacatgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
10463566 |
T |
|
| Q |
218 |
attaaat |
224 |
Q |
| |
|
|| |||| |
|
|
| T |
10463567 |
atgaaat |
10463573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 43733022 - 43733227
Alignment:
| Q |
18 |
gcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43733022 |
gcaggaaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggatggaaagtctctaaagaaggcttagatcttgttatgtg |
43733121 |
T |
|
| Q |
118 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
217 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43733122 |
tattcaattaattca-tttttgattacatgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
43733220 |
T |
|
| Q |
218 |
attaaat |
224 |
Q |
| |
|
|| |||| |
|
|
| T |
43733221 |
atgaaat |
43733227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 50672183 - 50672388
Alignment:
| Q |
18 |
gcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50672183 |
gcaggaaggttggatctgtttgaaggattttgaacaagaagactggacaactgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtg |
50672282 |
T |
|
| Q |
118 |
tattcaatcaagtcagattttgattacatgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
217 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50672283 |
tattcaattaattca-tttttgattacatgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatca |
50672381 |
T |
|
| Q |
218 |
attaaat |
224 |
Q |
| |
|
|| |||| |
|
|
| T |
50672382 |
atgaaat |
50672388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 50672414 - 50672507
Alignment:
| Q |
249 |
gttagtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattggtactgttttgaatcaattgtagaat |
342 |
Q |
| |
|
||||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50672414 |
gttagtattatgctttctcattatttcttcataacaatggttactcttgattgaaaacaatggtattggtgatgttttgaatcaattgtagaat |
50672507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 10463599 - 10463691
Alignment:
| Q |
249 |
gttagtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattggtactgttttgaatcaattgtagaat |
342 |
Q |
| |
|
||||||||||| |||| |||| || |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
10463599 |
gttagtattatgctttctcattatttcttcataacaatggttactcttgattgaaaacaat-gtattggtgctgttttgaatcaattgtagaat |
10463691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 43733253 - 43733345
Alignment:
| Q |
249 |
gttagtattatactttgtcatgatatcttcataacaatggttactcttgattgaaaacaatggtattggtactgttttgaatcaattgtagaat |
342 |
Q |
| |
|
||||||||||| |||| |||| || |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
43733253 |
gttagtattatgctttctcattatttcttcataacaatggttactcttgattgaaaacaat-gtattggtgctgttttgaatcaattgtagaat |
43733345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 4730 - 4784
Alignment:
| Q |
25 |
ggttggatctgtttgaaggattttgaacaagaagactggacagctgctattggga |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4730 |
ggttggatctgtttgaaggattttgaacaagaagactggacagctgctattggga |
4784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 332
Target Start/End: Original strand, 22681044 - 22681207
Alignment:
| Q |
168 |
ttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaattaaataaannnnnnnnnnnnnnnnnnnnggttagtattatactttgtc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||| |||| || |
|
|
| T |
22681044 |
ttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaataaaatca-tttttttcaatttattttttggtcagtattatgctttctc |
22681142 |
T |
|
| Q |
268 |
atgatatcttcataacaatggttactcttgattgaaaacaatggtattggtactgttttgaatca |
332 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||| ||||||| || |||||||||| |
|
|
| T |
22681143 |
atgatttcttcataacaatggttactcttggtttaaaacaatgttattggtgctattttgaatca |
22681207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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