View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14447_low_13 (Length: 270)
Name: NF14447_low_13
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 2917843 - 2918081
Alignment:
| Q |
14 |
agatagcaaaattcaaagcttgtggcttgttccaagttgattgacctaaagttttccatatagatatccattaaccaccaatcaactcaagtattgtctc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2917843 |
agatagcaaaattcaaagcttgtggcttgttccaagttgattgacctaaagttttccatatagatatccattaaccaccaatcaactcaagtattgtctc |
2917942 |
T |
|
| Q |
114 |
gtagaataagtaggctattttgcagaaatagtgtaatgttgaccctttgatttcttagaactgcattcaggtatgtcctgtgtccgactctgaaacatag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2917943 |
gtagaataagtaggctattttgcagaaatagtgtaatgttgaccctttgatttcttagaactgcattcagg--tgtcctgtgtccgactctgaaacatag |
2918040 |
T |
|
| Q |
214 |
ttacattcaattcaatcactttcactttcctaaattgttag |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2918041 |
ttacattcaattcaatcactttcactttcctaaattgttag |
2918081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 37792809 - 37792882
Alignment:
| Q |
14 |
agatagcaaaattcaaagcttgtggcttgttccaagttgattgacctaaagttttccatatagatatccattaa |
87 |
Q |
| |
|
||||| ||||||||| |||||||||||| ||||||||| | ||||||||||| | |||||||| ||||||||| |
|
|
| T |
37792809 |
agatatcaaaattcacagcttgtggcttactccaagttgctggacctaaagttattcatatagagatccattaa |
37792882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 28021380 - 28021429
Alignment:
| Q |
14 |
agatagcaaaattcaaagcttgtggcttgttccaagttgattgacctaaa |
63 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
28021380 |
agatatcaaaattcacagcttgtggtttgctccaagttgatggacctaaa |
28021429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University