View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_low_2 (Length: 640)
Name: NF14447_low_2
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 629
Target Start/End: Complemental strand, 34671695 - 34671084
Alignment:
| Q |
18 |
agaaatgtgatgataatactcttcttttccagatatattaaacttccaaatgtgcttaatgaagctctgaaatcacttaagcgcctcttaatcgccgcgg |
117 |
Q |
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| T |
34671695 |
agaaatgtgatgataatactcttcttttccagatatattaaacttccaaatgtgcttaatgaagctctgaaatcacttaagcgcctcttaatcgccgcgg |
34671596 |
T |
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| Q |
118 |
ttaaacaatgttgggattaattaatagtgttgcaatgcttattagaagaatcgattgcggcggtgtttggttgttgaagaagattgataagtgaccaaaa |
217 |
Q |
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| T |
34671595 |
ttaaacaatgttgggattaattaatagtgttgcaatgcttattagaagaatcgattgcggcggtgtttggttgttgaagaagattgataagtgaccaaaa |
34671496 |
T |
|
| Q |
218 |
cacatctatcctcgtcacatgtctatttgcctgttgtacaatacgataattgatatgtaaaccgacatttttagcttaagtagaaaaatgacaaagtaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671495 |
cacatctatcctcgtcacatgtctatttgcctgttgtacaatacgataattgatatgtaaaccgacatttttagcttaagtagaaaaatgacaaagtaaa |
34671396 |
T |
|
| Q |
318 |
aattgaaatcacttatatgccaccatttacttgttttattttaaatatttcaatcaaatattaaatattttacctcaacaataaagtgtgcccatagttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671395 |
aattgaaatcacttatatgccaccatttacttgttttattttaaatatttcaatcaaatattaaatattttacctcaacaataaagtgtgcccatagttt |
34671296 |
T |
|
| Q |
418 |
tttcttccttgtttccatctttgcttttaagatattcagcccgaaacctcgaattatgtcgactatctcaaggaagaaaccttgatcttcacaaagaatc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671295 |
tttcttccttgtttccatctttgcttttaagatattcagcccgaaacctcgaattatgtcgactatctcaaggaagaaaccttgatcttcacaaagaatc |
34671196 |
T |
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| Q |
518 |
tgcagcagaacaatgcaaatgagttcacatagcatagactataaaattttcaaatcatatacattcttattcggtttcttacctctataagcatttggcc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671195 |
tgcagcagaacaatgcaaatgagttcacatagcatagactataaaattttcaaatcatatacattcttattcggtttcttacctctataagcatttggcc |
34671096 |
T |
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| Q |
618 |
aggtgatttcat |
629 |
Q |
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| T |
34671095 |
aggtgatttcat |
34671084 |
T |
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