View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_low_4 (Length: 618)
Name: NF14447_low_4
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 605
Target Start/End: Complemental strand, 34898397 - 34897812
Alignment:
| Q |
20 |
agtatgactcttcctgttcttatagtgcattcagatttaatgttgtaattacatctccgttctattgcatcaactcgttttagtatcgtgtttttacttc |
119 |
Q |
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| T |
34898397 |
agtatgactcttcctgttcttatagtgtattcagatttaatgttgtaattacatctccgttctattgcatcaacttgttttagtatcgtgtttttatttc |
34898298 |
T |
|
| Q |
120 |
cttaacttttgtttgttactagtgtagtgtttgtgtttccttctactcgcatcaaatctaaatgaatttgaataacttggaatctttaattttataggga |
219 |
Q |
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| T |
34898297 |
cttaacttttgtttgttactagtgtagtgtttgtgtttccttctactcgcatcaactctaaatgaatttgaataacttggaatctttaattttataggga |
34898198 |
T |
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| Q |
220 |
tgcgcgtacaaaggaccttctgaaagtatttaacatcgatggtcaagcagaaaatcgagttgacatgtcatccgtgcagcaggatcaagcagtagaagac |
319 |
Q |
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| T |
34898197 |
tgcgcgtacaaaggaccttctgaaagtatttaacatcgatggtcaagcagaaaatcgagttgacatgtcatccgtgcagcaggatcaagcagtagaagac |
34898098 |
T |
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| Q |
320 |
gaaatgaaggtaaagtttgtttccaactcaaaaaaggaaaagtcccagagtactagctttctgcagaggtcacgtaatgcaatcatgggagctgcagatg |
419 |
Q |
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| T |
34898097 |
gaaatgaaggtgaagtttgtttccaactcaaaaaaggaaaagtcccagagtactagctttctgcagaggtcacgtaatgcaatcatgggagctgcagatg |
34897998 |
T |
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| Q |
420 |
ctgtccgtcgagttgcaactaagggagctggagcatttgttgatgatactaaaagaacggaagcccttgtgcaaacaaacgatgggatagtttggagtgg |
519 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34897997 |
ctgtccgtcgagttgcaaccaagggagctggagcatttgttgatgatactaaaagaacggaagcccttgtgcaaacaaacgatgggataatttggagtgg |
34897898 |
T |
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| Q |
520 |
atgtacaaatggcttacttgtgcaatgggatggaagtggaaaccgtttgcaggattttaatcgccacccttgtgccgtcctatgct |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34897897 |
atgtacaaatggcttacttgtgcaatgggatggaagtggaaaccgtttgcaggattttaatcgccacccttgtgccgtccaatgct |
34897812 |
T |
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