View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_low_5 (Length: 496)
Name: NF14447_low_5
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 14246275 - 14246745
Alignment:
| Q |
18 |
acgacaattacgaggtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtcatgtttggttat |
117 |
Q |
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| T |
14246275 |
acgacaattacgatgtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtcatgtttggttat |
14246374 |
T |
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| Q |
118 |
gtgggttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaataactgccgacacaaaca |
217 |
Q |
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| T |
14246375 |
gtgagttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaatagttgccgacacaaaca |
14246474 |
T |
|
| Q |
218 |
agcgctatgttgtctatctcctttgcatcacgagtgttgcagtgatgagatgagcccctcatggtgaaaaaattgattcattgaatcacaaaaaattgct |
317 |
Q |
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| T |
14246475 |
agcgctatgttgtctatctcctttgcatcacgagtgttgcagtgatgagatgagcccctcatggtgaaaaaattgattcattgaatcacaaaaaattgcc |
14246574 |
T |
|
| Q |
318 |
gttggttcttaacttctacaaattgtatcactccatttgcctgtttgcgagacaacaaaccttacttggatgaagcaaaattgttttattgaattcacaa |
417 |
Q |
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| T |
14246575 |
gttggttcataacttctacaaattgtaacactccatttgcctgtttgtgagacaacaaaccttacttggatgaagcaaaattgttttattgaattcacaa |
14246674 |
T |
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| Q |
418 |
gaatatttgtaaataaaatcagcaaatgtattgggaaaaatcatatgcataaatctgttacgagaattatt |
488 |
Q |
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| T |
14246675 |
gaatatttgtaaataaaatcagcaaatgtattgggaaaaattatatgcataaatctgttacgagaattatt |
14246745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 14379964 - 14379741
Alignment:
| Q |
21 |
acaattacgaggtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtcatgtttggttatgtg |
120 |
Q |
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||||||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||| | ||| |||||||||| |||||||||||||||||||| | |
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| T |
14379964 |
acaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatata |
14379865 |
T |
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| Q |
121 |
ggttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaataactgccgacacaaacaagc |
220 |
Q |
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|||||||| ||||| ||| | || | || | |||| |||||||| ||||||||||||||| ||||||| | ||||||| ||| | ||||||||| |
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| T |
14379864 |
ggttgattttatttctcgcat-ccgaagtttgttgagttgtaaattgaccaaaactctaattagtagaagttggtcaaatagttgctgcatcaaacaagc |
14379766 |
T |
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| Q |
221 |
gctatgttgtctatctcctttgcat |
245 |
Q |
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| T |
14379765 |
gttatgatgtctatctcctctgcat |
14379741 |
T |
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Back To:
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