View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14447_low_7 (Length: 434)
Name: NF14447_low_7
Description: NF14447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14447_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 416
Target Start/End: Original strand, 8172910 - 8173339
Alignment:
| Q |
2 |
atttattacgtcttcctaagaatgaaaaagtgttagatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaattatc |
101 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172910 |
atttattacgtcctcttaagaatgaaaaagtgttagatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaattatc |
8173009 |
T |
|
| Q |
102 |
ttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagattatgaaaatca |
201 |
Q |
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| T |
8173010 |
ttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatc-tacacaatgatgttaattccttggctaagttggaagattatgttaatca |
8173108 |
T |
|
| Q |
202 |
attgtgtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagttgaaatattcagaggctgaacttgttggaatctcgaatcgtctc |
301 |
Q |
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| T |
8173109 |
attgtgtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagttgaaatattcagaggctgaacttgttggaatctcgaatcgtctc |
8173208 |
T |
|
| Q |
302 |
cccatggatgaagaaaatcttc----------------gaatataagtcaaacaatggaaaccttcttacaacaacgtgaagctaaacaaacagagattg |
385 |
Q |
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| T |
8173209 |
cccatggatgaagaaaatcgtcgaatattggaaattaagaatataagtcaaacaatggaaaccttcttacaacaacgtgaagctaaacaaacagagattg |
8173308 |
T |
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| Q |
386 |
aacaagtttttatgaagaagatggatgtgtt |
416 |
Q |
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| T |
8173309 |
aacaagtttttatgaagaagatggatgtgtt |
8173339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 8225684 - 8225459
Alignment:
| Q |
2 |
atttattacgtcttcctaagaatgaaaaagtgttagatata---cttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaatt |
98 |
Q |
| |
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||||||||||||| |||| ||||||| |||||||||||| |||||||||||| |||| ||||||| || ||||| |||||||||||||||||||| |
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| T |
8225684 |
atttattacgtctgattaaggatgaaaaggtgttagatataatacttgacaaaaaaaggaattctgaggtaaagtatatggtgaatgatctacgtcaatt |
8225585 |
T |
|
| Q |
99 |
atcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagattatgaaaa |
198 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||| ||||||| |
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| T |
8225584 |
ttcttttcaaggttcgtggcttgattcaatagaaaaattatttgttaataat-ctacacgatgatgttagttctttggttaagttggaagatcatgaaaa |
8225486 |
T |
|
| Q |
199 |
tcaattgtgtaatgaacatatgtttct |
225 |
Q |
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| T |
8225485 |
tcaactgtgtaaggaacataggtttct |
8225459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 7591241 - 7591389
Alignment:
| Q |
19 |
aagaatgaaaaagtgttagatat----acttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaattatcttttgaaggttcg |
114 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
7591241 |
aagaatgaataagtgttagatatatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaattatcatttcaaggttcg |
7591340 |
T |
|
| Q |
115 |
tggcttgattcaatagaaaaattatttgttaataatcctacacaatgatg |
164 |
Q |
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| T |
7591341 |
tggcttgattcaatagaaaagttatttgctaataat-ctacataatgatg |
7591389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 44105684 - 44105742
Alignment:
| Q |
340 |
atggaaaccttcttacaacaacgtgaagctaaacaaacagagattgaacaagtttttat |
398 |
Q |
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| T |
44105684 |
atggaaaccttcatacaacaatgtgaagctaaacaaacagagattgaacaagtctttat |
44105742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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